View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_76 (Length: 246)
Name: NF7550_high_76
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44799132 - 44798906
Alignment:
| Q |
1 |
atgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44799132 |
atgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccatt |
44799033 |
T |
|
| Q |
101 |
ttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44799032 |
ttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacac |
44798933 |
T |
|
| Q |
201 |
tgccaagatcaataccaacgtggtttc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44798932 |
tgccaagatcaataccaacgtggtttc |
44798906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University