View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_77 (Length: 244)
Name: NF7550_high_77
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_77 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 26297285 - 26297090
Alignment:
| Q |
20 |
gcgttgttgtggcgtctcttttctatctaatccaataaatttgtacaaaaacttccctattcaattgcttcatttttcagcttccatacatttgtgaaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26297285 |
gcgttgttgtggcgtctcttttctatctaatccaataaatttgtataaaaacttccctattcaattgcttcatttttcagcttccatacatttgtgagat |
26297186 |
T |
|
| Q |
120 |
aacaaattaatgtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacactaatatttacactacttatgt |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297185 |
aacaaattaatatcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacactaatatttacactacttatgt |
26297090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 32664426 - 32664627
Alignment:
| Q |
39 |
tttctatctaatccaataaatttgtacaaaaa---------cttccctattcaattgcttcatttttcagcttccatacatttgtgaaataacaaattaa |
129 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32664426 |
tttctatctaatccaataaagttgtacaaaaaatttccaaccttccctattcaattgcttcatttttcagcttccatacatttgtgagataacaaat--- |
32664522 |
T |
|
| Q |
130 |
tgtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacactaatatttacactacttatgtatcaaaaatgtatt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
32664523 |
-gtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacattaatatttacagtacttatgtatcaaaaatgtatt |
32664621 |
T |
|
| Q |
230 |
tgcttc |
235 |
Q |
| |
|
|||||| |
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|
| T |
32664622 |
tgcttc |
32664627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 9082743 - 9082542
Alignment:
| Q |
39 |
tttctatctaatccaataaatttgtacaaaaa---------cttccctattcaattgcttcatttttcagcttccatacatttgtgaaataacaaattaa |
129 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
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| T |
9082743 |
tttcgatctaatccaataaagttgtacaaaaaatttccaaccttccctattcaattgattcatttttcagcttctatacatttgtgagataacaaat--- |
9082647 |
T |
|
| Q |
130 |
tgtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacactaatatttacactacttatgtatcaaaaatgtatt |
229 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
9082646 |
-gtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacattaatatttacagtacttatgtatcaaaaatgtatt |
9082548 |
T |
|
| Q |
230 |
tgcttc |
235 |
Q |
| |
|
|||||| |
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|
| T |
9082547 |
tgcttc |
9082542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 6413947 - 6413746
Alignment:
| Q |
39 |
tttctatctaatccaataaatttgtacaaaaa---------cttccctattcaattgcttcatttttcagcttccatacatttgtgaaataacaaattaa |
129 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
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| T |
6413947 |
tttcgatctaatccaataaagttgtacaaaaaatttccaaccttccctattcaattgattcatttttcagcttctatacatttgtgagataacaaat--- |
6413851 |
T |
|
| Q |
130 |
tgtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacactaatatttacactacttatgtatcaaaaatgtatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
6413850 |
-gtcaatgttatcatgtagcaactgcttcacatttgttgaaataaaatccgttcataccaaacattaatatttacagtacttatgtatcaaaaatgtatt |
6413752 |
T |
|
| Q |
230 |
tgcttc |
235 |
Q |
| |
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|||||| |
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|
| T |
6413751 |
tgcttc |
6413746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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