View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_81 (Length: 239)
Name: NF7550_high_81
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48557024 - 48557245
Alignment:
| Q |
1 |
cttacaagaacaccagtgtttgaagttaagacgaacatgtacactaaattcatgaaataaactattaatattatttaacaattacccctttgtccatcaa |
100 |
Q |
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| T |
48557024 |
cttacaagaacaccagtgtttgcagttaagacgaacatgtacactaaattcatgaaataaactactaatattatttaacaattacccctttggccatcaa |
48557123 |
T |
|
| Q |
101 |
tggagtaatatttttctactgtcgtcaaattccgttccgtcctattagtactctttagcgtagctcttataagaatatccatgtgtttgtcatttcacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48557124 |
tggagtaatatttttctactgtcgtcaaattccgttccatcctattagtactctttagcgtagctcttataagaatatccatgtgtttgtcatttcacat |
48557223 |
T |
|
| Q |
201 |
tttataagttgaatgtgtaaat |
222 |
Q |
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|
|||||||||||||||||||||| |
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| T |
48557224 |
tttataagttgaatgtgtaaat |
48557245 |
T |
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