View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_86 (Length: 236)

Name: NF7550_high_86
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_86
NF7550_high_86
[»] chr1 (8 HSPs)
chr1 (13-236)||(6349235-6349458)
chr1 (119-202)||(6380799-6380882)
chr1 (122-180)||(6367287-6367345)
chr1 (119-188)||(6359433-6359503)
chr1 (121-187)||(6399880-6399946)
chr1 (130-187)||(6391603-6391660)
chr1 (129-202)||(6404591-6404664)
chr1 (128-164)||(6428519-6428555)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 6349458 - 6349235
Alignment:
Q  13 tggttagctactttaagtttagctagtgattcaatatgaatataaatcagaatttatcatagacaaaatagatacacactagatattcgtattgactggg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6349458 tggttagctactttaagtttagctagtgattcaatatgaatataaatcagaatttatcatagtcaaaatagatacacactagatattcgtattgactggg 6349359  T
Q  113 ttccatttaatatcgtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacccaagcatgtgctctcgcaccccaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6349358 ttccatttaatatcgtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacccaagcatgtgctctcgcaccccaat 6349259  T
Q  213 tagcagcagcttttggtgatcttc 236  Q
    ||||||||||||||||||||||||    
T  6349258 tagcagcagcttttggtgatcttc 6349235  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 6380882 - 6380799
Alignment:
Q  119 ttaatatcgtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacccaagcatgtgctctc 202  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||| || |||| ||||||    
T  6380882 ttaatatagtaaaagttaatggaacagaaagaaatattttaaccagggtgttccttgttacaagccaccaaatcatgagctctc 6380799  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 6367345 - 6367287
Alignment:
Q  122 atatcgtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttaca 180  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6367345 atatagtaaaagttaatggaaaagaaagaaatattttaacctgagtgttccttgttaca 6367287  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 6359503 - 6359433
Alignment:
Q  119 ttaatatcgtaaaagttaa-tggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcaccc 188  Q
    ||||||| ||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||| ||| |||||    
T  6359503 ttaatatagtaaaagttaagtggaaaagaaaaaaatattctaacctgagtgttgcttgttataagccaccc 6359433  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 6399946 - 6399880
Alignment:
Q  121 aatatcgtaaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacc 187  Q
    ||||| ||||| ||||||| ||||| ||||||||||| |||||| ||||| ||||||||||| ||||    
T  6399946 aatatagtaaaggttaatgaaaaaggaagaaatatttgaacctgagtgttccttgttacaagccacc 6399880  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 6391660 - 6391603
Alignment:
Q  130 aaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacc 187  Q
    |||||||||| |||| ||||||||||||||||||| ||||| |||||| |||| ||||    
T  6391660 aaagttaatgaaaaataaagaaatattttaacctgagtgttccttgttgcaagccacc 6391603  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 6404664 - 6404591
Alignment:
Q  129 aaaagttaatggaaaagaaagaaatattttaacctgggtgttgcttgttacaagtcacccaagcatgtgctctc 202  Q
    ||||||||| | |||||||||||||||||||||||| | ||| ||||||||||  |||| || |||||| ||||    
T  6404664 aaaagttaacgaaaaagaaagaaatattttaacctgagagttccttgttacaaaccaccaaatcatgtgatctc 6404591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 6428555 - 6428519
Alignment:
Q  128 taaaagttaatggaaaagaaagaaatattttaacctg 164  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6428555 taaaagttaatgaaaaagaaagaaatattttaacctg 6428519  T

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