View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_9 (Length: 648)

Name: NF7550_high_9
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_9
NF7550_high_9
[»] chr6 (14 HSPs)
chr6 (184-427)||(34355827-34356069)
chr6 (429-621)||(34355580-34355784)
chr6 (10-150)||(34356105-34356245)
chr6 (453-581)||(34355145-34355273)
chr6 (316-426)||(9959173-9959283)
chr6 (541-582)||(34355097-34355138)
chr6 (429-477)||(1493234-1493282)
chr6 (363-427)||(1493325-1493389)
chr6 (429-481)||(16890310-16890362)
chr6 (316-427)||(16890157-16890267)
chr6 (429-476)||(31029228-31029275)
chr6 (429-475)||(30140932-30140978)
chr6 (437-482)||(13768261-13768306)
chr6 (452-481)||(13825595-13825624)
[»] chr5 (14 HSPs)
chr5 (220-427)||(19741613-19741820)
chr5 (220-427)||(2157860-2158067)
chr5 (214-387)||(34920052-34920225)
chr5 (214-427)||(22292223-22292436)
chr5 (429-480)||(2157766-2157817)
chr5 (429-480)||(22292479-22292530)
chr5 (429-481)||(18759815-18759867)
chr5 (437-481)||(19741518-19741562)
chr5 (435-481)||(36045023-36045069)
chr5 (315-424)||(21092152-21092261)
chr5 (437-482)||(23622611-23622656)
chr5 (315-427)||(28246202-28246314)
chr5 (429-481)||(21092307-21092356)
chr5 (429-475)||(29754948-29754994)
[»] chr8 (21 HSPs)
chr8 (205-427)||(14657789-14658011)
chr8 (214-427)||(15990493-15990706)
chr8 (316-427)||(14505667-14505778)
chr8 (315-425)||(1186490-1186600)
chr8 (429-480)||(14505821-14505872)
chr8 (429-480)||(15990399-15990450)
chr8 (429-480)||(37590026-37590077)
chr8 (437-481)||(14657694-14657738)
chr8 (292-426)||(27978667-27978801)
chr8 (292-426)||(28035936-28036070)
chr8 (214-427)||(37590120-37590333)
chr8 (316-426)||(2246805-2246915)
chr8 (437-482)||(13700123-13700168)
chr8 (437-481)||(2246709-2246753)
chr8 (364-427)||(17837237-17837300)
chr8 (437-476)||(22897969-22898008)
chr8 (328-427)||(34723936-34724035)
chr8 (435-481)||(13811609-13811655)
chr8 (253-391)||(19299140-19299278)
chr8 (437-482)||(953778-953823)
chr8 (439-484)||(17837139-17837184)
[»] chr2 (24 HSPs)
chr2 (214-391)||(27268007-27268185)
chr2 (220-427)||(36641209-36641416)
chr2 (214-427)||(16206383-16206596)
chr2 (208-427)||(2058546-2058765)
chr2 (429-480)||(16206639-16206690)
chr2 (214-387)||(23379717-23379886)
chr2 (437-482)||(23761362-23761407)
chr2 (437-482)||(23789506-23789551)
chr2 (282-391)||(20661105-20661214)
chr2 (437-482)||(23762495-23762540)
chr2 (429-481)||(2058808-2058860)
chr2 (429-481)||(23379968-23380020)
chr2 (287-427)||(44886212-44886352)
chr2 (316-426)||(11818527-11818637)
chr2 (202-427)||(23761458-23761682)
chr2 (202-427)||(23789602-23789826)
chr2 (363-427)||(11502315-11502379)
chr2 (429-481)||(11553427-11553479)
chr2 (429-481)||(11818431-11818483)
chr2 (429-481)||(20661293-20661345)
chr2 (429-480)||(36641459-36641510)
chr2 (435-476)||(30848311-30848352)
chr2 (287-391)||(23762627-23762730)
chr2 (429-481)||(44886395-44886447)
[»] chr1 (17 HSPs)
chr1 (220-427)||(41117039-41117246)
chr1 (204-427)||(24427578-24427785)
chr1 (253-427)||(40490097-40490271)
chr1 (214-427)||(30033426-30033639)
chr1 (220-332)||(49372174-49372286)
chr1 (286-392)||(52147827-52147933)
chr1 (429-481)||(49372418-49372470)
chr1 (287-427)||(9361684-9361824)
chr1 (316-423)||(21701560-21701667)
chr1 (429-480)||(30033682-30033733)
chr1 (429-480)||(41117289-41117340)
chr1 (287-427)||(24083292-24083432)
chr1 (437-481)||(21701461-21701505)
chr1 (437-481)||(24427484-24427528)
chr1 (437-481)||(52147697-52147741)
chr1 (429-476)||(6507904-6507951)
chr1 (437-480)||(24065321-24065364)
[»] chr4 (20 HSPs)
chr4 (205-427)||(16582421-16582643)
chr4 (205-427)||(20527862-20528084)
chr4 (214-427)||(30859207-30859420)
chr4 (315-427)||(55227557-55227669)
chr4 (429-480)||(55227712-55227763)
chr4 (429-479)||(30859463-30859513)
chr4 (214-423)||(30191034-30191243)
chr4 (339-427)||(16431438-16431526)
chr4 (437-481)||(20527767-20527811)
chr4 (437-481)||(14264147-14264191)
chr4 (432-480)||(30190936-30190984)
chr4 (316-426)||(4235259-4235369)
chr4 (437-481)||(13686116-13686160)
chr4 (437-481)||(16431343-16431387)
chr4 (437-475)||(18878282-18878320)
chr4 (253-391)||(54823552-54823690)
chr4 (437-485)||(4227891-4227939)
chr4 (437-481)||(16582326-16582370)
chr4 (437-485)||(27066330-27066378)
chr4 (437-485)||(27087431-27087479)
[»] chr7 (25 HSPs)
chr7 (220-427)||(15633079-15633286)
chr7 (220-427)||(13015046-13015253)
chr7 (205-391)||(11342928-11343113)
chr7 (429-480)||(13014952-13015003)
chr7 (429-480)||(15633329-15633380)
chr7 (316-426)||(4646036-4646146)
chr7 (317-427)||(32480162-32480272)
chr7 (437-481)||(3896573-3896617)
chr7 (429-481)||(48770212-48770264)
chr7 (437-480)||(32480323-32480366)
chr7 (205-427)||(3205214-3205436)
chr7 (287-427)||(17238756-17238896)
chr7 (437-480)||(30502614-30502657)
chr7 (316-391)||(41601379-41601454)
chr7 (429-482)||(11343192-11343245)
chr7 (429-481)||(8118787-8118839)
chr7 (429-481)||(17238661-17238713)
chr7 (437-485)||(27810644-27810692)
chr7 (429-481)||(47081640-47081692)
chr7 (363-426)||(24226291-24226354)
chr7 (429-476)||(26016628-26016675)
chr7 (435-476)||(29961966-29962007)
chr7 (437-482)||(48100727-48100772)
chr7 (437-473)||(24226203-24226239)
chr7 (429-481)||(41601533-41601585)
[»] chr3 (31 HSPs)
chr3 (214-391)||(38015181-38015358)
chr3 (214-427)||(6006118-6006331)
chr3 (220-427)||(16739513-16739720)
chr3 (429-480)||(16739419-16739470)
chr3 (316-427)||(17790098-17790209)
chr3 (429-480)||(17790252-17790303)
chr3 (316-427)||(19098540-19098651)
chr3 (429-480)||(19098694-19098745)
chr3 (428-475)||(29372946-29372993)
chr3 (429-479)||(6006025-6006075)
chr3 (214-428)||(31228082-31228296)
chr3 (439-484)||(53437645-53437690)
chr3 (437-480)||(31228346-31228389)
chr3 (335-426)||(31661057-31661148)
chr3 (316-426)||(31809108-31809218)
chr3 (439-481)||(53394944-53394986)
chr3 (335-426)||(31935205-31935296)
chr3 (335-426)||(31973463-31973554)
chr3 (429-476)||(35906925-35906972)
chr3 (429-481)||(8566114-8566166)
chr3 (437-485)||(19602903-19602951)
chr3 (437-481)||(38015051-38015095)
chr3 (315-391)||(53437481-53437557)
chr3 (437-476)||(16877963-16878002)
chr3 (429-480)||(49644570-49644621)
chr3 (292-387)||(53394757-53394852)
chr3 (205-391)||(49643731-49643917)
chr3 (437-482)||(12526575-12526620)
chr3 (437-482)||(42626153-42626198)
chr3 (436-476)||(14485651-14485691)
chr3 (429-481)||(18357208-18357260)
[»] scaffold0040 (1 HSPs)
scaffold0040 (437-480)||(62477-62520)
[»] scaffold0789 (2 HSPs)
scaffold0789 (437-481)||(4204-4248)
scaffold0789 (363-426)||(4300-4363)
[»] scaffold0011 (1 HSPs)
scaffold0011 (287-427)||(191087-191227)
[»] scaffold0341 (2 HSPs)
scaffold0341 (429-476)||(1929-1976)
scaffold0341 (429-476)||(9585-9632)
[»] scaffold0112 (1 HSPs)
scaffold0112 (447-479)||(34703-34735)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 184 - 427
Target Start/End: Complemental strand, 34356069 - 34355827
Alignment:
Q  184 gtatagttgttaagctccggcttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctg 283  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  34356069 gtatagttgttaagctctggcttgcattcggctttacaatggttgagtgacatacaatttgatagtgtaaattttgaaacggagtctaagctgatttctg 34355970  T
Q  284 atacttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtgga 383  Q
    |||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |    
T  34355969 atacttttctttctaataggaacgacatg-ccgaatttggttgcattatttcttcttgtcgttctttgtttacttctttattttttaactctagggtgaa 34355871  T
Q  384 gtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    ||||||||| | |||||||||||||||| |||||||||||||||    
T  34355870 gtttgttatgcgaaaagccaacgaggttgctcatgctcttgcaa 34355827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 429 - 621
Target Start/End: Complemental strand, 34355784 - 34355580
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttctctcnnnnnnnntattctactataagaccattttaaaagatttgatt 528  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  34355784 tacccaattgtattgaaactcttattatcaatgaaatgctataagcatgtttctctcaaaaaaaatattctactataagaccattttaaaagatttgatt 34355685  T
Q  529 atcattaaatataagactctctacaaattattatatatattaatataagattctct------------atggatttattatgttttttaagccactaaca 616  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  34355684 atcgttaaatataagactctctacaaattattttatatattaatataagattctctacaaattattagatggatttattatgttttttaagccactaaca 34355585  T
Q  617 ccttg 621  Q
    |||||    
T  34355584 ccttg 34355580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 34356245 - 34356105
Alignment:
Q  10 tcgaagaatataatgaaccaaggaaatatttagcatcttaactcttgatttaaaggaaaattacattgacaggtcaaaaagtctaggaaacctcttaact 109  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||    
T  34356245 tcgaaaaatataatgaaccaaggaaatatttggcatcttaactcttgatttaaacgaaaattacattgacaggtcaaaaattctaggaaaccttttaact 34356146  T
Q  110 cttgatttaaaggaataagagatatactatgtaattaactc 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34356145 cttgatttaaaggaataagagatatactatgtaattaactc 34356105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 34355273 - 34355145
Alignment:
Q  453 ttatcaatgaaatgctataagcatgtttctctcnnnnnnnntattctactataagaccattttaaaagatttgattatcattaaatataagactctctac 552  Q
    |||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  34355273 ttatcaatgaaatgttataagcatgtttctctcagaaaaaatattctactataagaccattttaaaagatttgattattgttaaatataagactctctac 34355174  T
Q  553 aaattattatatatattaatataagattc 581  Q
    ||||||||| |||||||||||||||||||    
T  34355173 aaattattagatatattaatataagattc 34355145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 316 - 426
Target Start/End: Original strand, 9959173 - 9959283
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    ||||||||||  |||||||||||||||| |||||||||   |  || || || |||||||||||||||||||||||  | | ||||||||| |||| |||    
T  9959173 gaatttggttctattatttcttcttgtcgttctttgttccgtaatttatattctaactctagggtggagtttgttaggcgacaagccaacgcggttgctc 9959272  T
Q  416 atgctcttgca 426  Q
    |||||||||||    
T  9959273 atgctcttgca 9959283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 582
Target Start/End: Original strand, 34355097 - 34355138
Alignment:
Q  541 aagactctctacaaattattatatatattaatataagattct 582  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  34355097 aagactctctacaaattattagatatattaatataagattct 34355138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 1493282 - 1493234
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatg 477  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  1493282 tacccaattatattgaaactattattatcaatgaaatgctataagcatg 1493234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 1493389 - 1493325
Alignment:
Q  363 attttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    ||||| |||||||||||||||||||||||  | | ||||||||| |||| |||||||||||||||    
T  1493389 attttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcaa 1493325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 16890310 - 16890362
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| ||| ||||||||||| |||| |||||||||| |||||||||||||    
T  16890310 tacccaattgttttgaaactcttgttattaatgaaatgcaataagcatgtttc 16890362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 16890157 - 16890267
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||||||||||||||||||||||| ||  |  || |   ||| ||||| |||||||||||||||||||||||  | | ||  ||||| |||| |||    
T  16890157 gaatttggttgcattatttcttcttgtctttggtatttcaca-ctttattttataactctagggtggagtttgttaggcgacaaagcaacgcggttgctc 16890255  T
Q  416 atgctcttgcaa 427  Q
    ||||||||||||    
T  16890256 atgctcttgcaa 16890267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Original strand, 31029228 - 31029275
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||| |||||||| ||| |||| ||||||||||||||||||||||    
T  31029228 tacccaattgtattgagactattatgatcaatgaaatgctataagcat 31029275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 30140978 - 30140932
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagca 475  Q
    ||||||| |||||||||||| | ||||| ||||||||||||||||||    
T  30140978 tacccaattgtattgaaactttgattattaatgaaatgctataagca 30140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 13768261 - 13768306
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    ||||||||| |||||||||| ||| ||||||||||||||| |||||    
T  13768261 tgtattgaatctcttattattaatcaaatgctataagcatatttct 13768306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 481
Target Start/End: Original strand, 13825595 - 13825624
Alignment:
Q  452 attatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||||||||||||||||||||||    
T  13825595 attatcaatgaaatgctataagcatgtttc 13825624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 220 - 427
Target Start/End: Complemental strand, 19741820 - 19741613
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    |||||||| |||||||| || ||||||| |||||||||||||||||| |||||| |||  |||||| ||||||| ||| | ||||||||||||| |||||    
T  19741820 caatggttaagtgacatgcagtttgataatgtagattttgaaacggattttaagttgacgtctgatgcttttctctctgacaggaatgacacgtccgaat 19741721  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||||||||||| ||||| |||||  |||||||||||| | |||||||  | | |||| |||| |||| |||||||    
T  19741720 ttggctgcattatttcttcttgtcgttctttgtttacttctttattttccaactctagggtgaaatttgttaggcgacaagctaacggggttgctcatgc 19741621  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  19741620 tcttgcaa 19741613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 220 - 427
Target Start/End: Complemental strand, 2158067 - 2157860
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||| || | |||  ||  | ||||| ||||||| ||  | ||||||||||| | |||||    
T  2158067 caatggttgagcgacatgcagtttgatagtgtggatttcgaaacagattctaaattgtctgctgatgcttttctctccgacaggaatgacacatccgaat 2157968  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| |||||   | ||| |||||  |||||| |||||||||||||||  | | ||||||||||| || || ||||    
T  2157967 ttggctgcattatttcttcttgtcgttcgttgttccctcctttattttccaactctcgggtggagtttgttaggcgacaagccaacgagattgcttatgc 2157868  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  2157867 tcttgcaa 2157860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 387
Target Start/End: Complemental strand, 34920225 - 34920052
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||| | ||||| || || ||||||| ||| |||||||||||||| |||||  |||    |||| ||||||| | | | ||||||||||| |    
T  34920225 gctttgcaatggctcagtgatatgcagtttgataatgtggattttgaaacggattttaatttgacggttgatgcttttctctatgacaggaatgacactt 34920126  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagttt 387  Q
      |||||||||||||||||| ||||||||| |||||||||||  |||| ||||| |||||||||||| ||||||    
T  34920125 ctgaatttggttgcattattacttcttgtcgttctttgtttaactctttattttctaactctagggtagagttt 34920052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 214 - 427
Target Start/End: Original strand, 22292223 - 22292436
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || || ||||| | ||| ||||| ||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  22292223 gctttgcaatggttgagtgatatgcagtttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 22292322  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  22292323 ccgaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgc 22292422  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  22292423 tcatgctcttgcaa 22292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 2157817 - 2157766
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  2157817 tacccaattgtattgaaactattattatcaatgaaatgctataagcatgttt 2157766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 22292479 - 22292530
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  22292479 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 22292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 18759815 - 18759867
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| | |||||||||| ||||||| ||||||||||||||||||||||||    
T  18759815 tacccaattatattgaaacttttattattaatgaaatgctataagcatgtttc 18759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 19741562 - 19741518
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  19741562 tgtattgaaactcttattatcaatgaaatgttataagcaagtttc 19741518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 36045023 - 36045069
Alignment:
Q  435 aatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  36045023 aatgtattgaatctcttattattaatgaaatgctataagcatatttc 36045069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 424
Target Start/End: Original strand, 21092152 - 21092261
Alignment:
Q  315 cgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttact 414  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| | | |  || | ||||||||||||||||||| |||  | | ||||||| | |||  ||    
T  21092152 cgaatttggctgcattatttcatcttgtcgttctttgtttagtacctttttctctaactctagggtggagtttattaggcgacaagccaatggggtccct 21092251  T
Q  415 catgctcttg 424  Q
    ||||||||||    
T  21092252 catgctcttg 21092261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 23622611 - 23622656
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||    
T  23622611 tgtattgaatctcttattattaatgaaatgctataagcatatttct 23622656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 28246202 - 28246314
Alignment:
Q  315 cgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttact 414  Q
    ||||||||| ||||||||||| || |||  ||||||||| | | |||  |||| |||||||||| ||||||||||||  | | ||| ||||| ||||  |    
T  28246202 cgaatttggctgcattatttcctcctgttgttctttgttcaatactttcttttctaactctaggatggagtttgttagacgacaagtcaacgtggttgtt 28246301  T
Q  415 catgctcttgcaa 427  Q
    |||||||||||||    
T  28246302 catgctcttgcaa 28246314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 21092307 - 21092356
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| ||||||||||||||||||   ||||||||| ||||||||||||||    
T  21092307 tacccaattgtattgaaactcttatt---aatgaaatgttataagcatgtttc 21092356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 29754994 - 29754948
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagca 475  Q
    ||||||| |||||||||||| | ||||| ||||||||||||||||||    
T  29754994 tacccaattgtattgaaactttgattattaatgaaatgctataagca 29754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 205 - 427
Target Start/End: Complemental strand, 14658011 - 14657789
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    ||||| ||||| ||||| |||||||||||| |  | |||||||| || |||||||||||||| | ||||||||  |||||| ||||||| ||| | ||||    
T  14658011 ttgcactcggcattacagtggttgagtgacttgtagtttgatagcgtggattttgaaacggattctaagctgacgtctgatgcttttctctctgacagga 14657912  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaa 404  Q
    | ||||||| |||||||||||||||||||||||||||||||| |||||||| || || | ||| |||||||||||||||||||||||  | | |||||||    
T  14657911 acgacacgtccgaatttggttgcattatttcttcttgtcattatttgtttacttatttagtttctaactctagggtggagtttgttaggcgacaagccaa 14657812  T
Q  405 cgaggttactcatgctcttgcaa 427  Q
    | ||||  |||||||||||||||    
T  14657811 caaggtatctcatgctcttgcaa 14657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 214 - 427
Target Start/End: Complemental strand, 15990706 - 15990493
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || || ||||| | | | ||||||||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  15990706 gctttgcaatggttgagtgatatgcagtttgacaatttggattttgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 15990607  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| || |||| ||||||||| ||| |||  |||| |||||||||||||||||||||||  | | ||||| ||| |||| |    
T  15990606 ccgaatttggatgcattatttcctcctgtcgttctttgttcattactttcttttctaactctagggtggagtttgttaggcgacaagcctacgtggttgc 15990507  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  15990506 tcatgctcttgcaa 15990493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 14505667 - 14505778
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |||    
T  14505667 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 14505766  T
Q  416 atgctcttgcaa 427  Q
    ||||||||||||    
T  14505767 atgctcttgcaa 14505778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 425
Target Start/End: Original strand, 1186490 - 1186600
Alignment:
Q  315 cgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttact 414  Q
    ||||||||||||||||||||| || |||| |||||| ||   | ||| ||||| |||||||||||||||||||||||  | | ||||||||| |||| ||    
T  1186490 cgaatttggttgcattatttcctcctgtcgttctttattctgtacttcattttctaactctagggtggagtttgttaggcgacaagccaacgtggttgct 1186589  T
Q  415 catgctcttgc 425  Q
    |||||||||||    
T  1186590 catgctcttgc 1186600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 14505821 - 14505872
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  14505821 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 14505872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 15990450 - 15990399
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  15990450 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 15990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 37590077 - 37590026
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgctataagcatgttt 37590026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 14657738 - 14657694
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  14657738 tgtattgaaactcttataatcaatgaaatgctataagcatgtttc 14657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 426
Target Start/End: Original strand, 27978667 - 27978801
Alignment:
Q  292 ctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    |||||||| |||||||||  ||  ||||||||  | ||||||||||| |||| ||||||||||     || ||||| |||||||| ||||||||||||||    
T  27978667 ctttctaaaaggaatgacttgtctgaatttggccgtattatttcttcctgtcgttctttgtttcgcaatttattttctaactctatggtggagtttgtta 27978766  T
Q  392 ttcaaaaagccaacgaggttactcatgctcttgca 426  Q
      | | ||||||||| |||| ||||||||||||||    
T  27978767 ggctacaagccaacgcggttgctcatgctcttgca 27978801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 426
Target Start/End: Original strand, 28035936 - 28036070
Alignment:
Q  292 ctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    |||||||| |||||||||  ||  ||||||||  | ||||||||||| |||| ||||||||||     || ||||| |||||||| ||||||||||||||    
T  28035936 ctttctaaaaggaatgacttgtctgaatttggccgtattatttcttcctgtcgttctttgtttcgcaatttattttctaactctatggtggagtttgtta 28036035  T
Q  392 ttcaaaaagccaacgaggttactcatgctcttgca 426  Q
      | | ||||||||| |||| ||||||||||||||    
T  28036036 ggctacaagccaacgcggttgctcatgctcttgca 28036070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 427
Target Start/End: Complemental strand, 37590333 - 37590120
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || |||||||| | ||| ||||| ||||| || |||||| | |   ||||  | || ||||||| ||| || |||  ||    
T  37590333 gctttgcaatggttgagtgatatgcaatttgacaatgtggatttcgaaacagactttaagttaacggctgaagccttcctttctactagaaacgacttgt 37590234  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     | ||||||| |||||| |||| ||  ||| ||||||||| | |  ||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  37590233 ccaaatttggatgcattgtttcctcccgtcgttctttgttcagtattttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgc 37590134  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  37590133 tcatgctcttgcaa 37590120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 2246915 - 2246805
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||| |||||||| || || ||||  ||| |||||| |||||  |||   ||||||||||||||||||||||  ||| |||| ||||||||| |||    
T  2246915 gaatttgggtgcattatctcatcatgtcggtctctgtttaattctttctttaccaactctagggtggagtttgttaggcaacaagcaaacgaggttgctc 2246816  T
Q  416 atgctcttgca 426  Q
    ||| |||||||    
T  2246815 atgttcttgca 2246805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 13700168 - 13700123
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||    
T  13700168 tgtattgaaactattattattaatgaaatgctataagcatctttct 13700123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 2246753 - 2246709
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  2246753 tgtattgaacctcttattattaatgaaatgctataagcatatttc 2246709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 17837300 - 17837237
Alignment:
Q  364 ttttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||| |||||||||||||||||||||||  | | ||||||||| |||| ||||| |||||||||    
T  17837300 ttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatactcttgcaa 17837237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Original strand, 22897969 - 22898008
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  22897969 tgtattgaaactattattattaatgaaatgctataagcat 22898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 34724035 - 34723936
Alignment:
Q  328 attatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||| |||| |||| ||||||||||  |  || ||||| |||||| ||||||||||||||||  | | ||||||||| |||| ||||| |||||||||    
T  34724035 attattacttcctgtcgttctttgtttcgtaatttattttctaactccagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaa 34723936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 13811655 - 13811609
Alignment:
Q  435 aatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||| || ||||||| ||||||||||||||||||| ||||    
T  13811655 aatgtattgaatctattattataaatgaaatgctataagcatctttc 13811609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 391
Target Start/End: Complemental strand, 19299278 - 19299140
Alignment:
Q  253 gattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgt 352  Q
    ||||||||||| || | |||| ||||  ||||| |||| ||||||| ||||||||||  || | ||||| | || |||||||| || |||| ||||||||    
T  19299278 gattttgaaacagactctaagttgatagctgatgctttcctttctactaggaatgacttgtccaaatttagctgtattatttcctcctgtcgttctttgt 19299179  T
Q  353 ttatttcttgattttttaactctagggtggagtttgtta 391  Q
    | |   |||  |||| ||||||||||||| |||||||||    
T  19299178 tcagcactttcttttctaactctagggtgaagtttgtta 19299140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 953778 - 953823
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    ||||||||| |||||||||| ||| ||||||||| |||||||||||    
T  953778 tgtattgaacctcttattattaataaaatgctatgagcatgtttct 953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 17837184 - 17837139
Alignment:
Q  439 tattgaaactcttattatcaatgaaatgctataagcatgtttctct 484  Q
    ||||||| || | ||||| |||||||||||||||||||||||||||    
T  17837184 tattgaatctttaattattaatgaaatgctataagcatgtttctct 17837139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 214 - 391
Target Start/End: Complemental strand, 27268185 - 27268007
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||| ||||||||  | ||||||| ||| |||||||||||||| |||||| |||  |||||| ||||||| ||| | || ||||||||||    
T  27268185 gctttgcaatggttaagtgacatgaagtttgataatgtggattttgaaacggattttaagttgacgtctgatgcttttctctctgacagaaatgacacgt 27268086  T
Q  314 tcgaatttggtt-gcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  27268085 ccgaatttggtttgcattatttcttcttgtcattctttgtttatttctttattttctaactctagggtggagtttgtta 27268007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 220 - 427
Target Start/End: Original strand, 36641209 - 36641416
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    ||||||||||| ||||| || ||||||||||| ||||||||||| || | |||  || || ||||| ||||||| ||| ||||||| ||||| | |||||    
T  36641209 caatggttgagcgacatgcagtttgatagtgtggattttgaaacagattctaaattgtttgctgatgcttttctctctgataggaacgacacatccgaat 36641308  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| ||||| | | ||| |||||| |||||| |||||||||||||||  | | |||||||||||||| |||||||    
T  36641309 ttggctgcattatttcttcttgtcgttcgttgttcactgctttatttttcaactctcgggtggagtttgttaggcgacaagccaacgaggttgctcatgc 36641408  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  36641409 tcttgcaa 36641416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 214 - 427
Target Start/End: Original strand, 16206383 - 16206596
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || || ||||| | ||| ||||||||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  16206383 gctttgcaatggttgagtgatatgcagtttgacaatgtggattttgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 16206482  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| || |||| ||||||||| ||| |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  16206483 ccgaatttggatgcattatttcctcctgtcgttctttgttcattactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgc 16206582  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  16206583 tcatgctcttgcaa 16206596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 427
Target Start/End: Original strand, 2058546 - 2058765
Alignment:
Q  208 cattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatg 307  Q
    ||||||||||| |||||| | ||||| || || || ||||| || |||||||||||||| | |||  | |  |||||| ||||||| |||| ||| ||||    
T  2058546 cattcggctttgcaatggctaagtgatatgcagttcgatagcgtggattttgaaacggactctaaagtcacatctgatgcttttctgtctactagaaatg 2058645  T
Q  308 acacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacga 407  Q
    |||| |  |||||||||| ||||||||| ||||||| ||   | ||||  ||||  ||||  ||||||| ||||||||||||||  | | || |||||      
T  2058646 acacatctgaatttggttccattatttcatcttgtcgtttactatttagctctttcttttcgaactctaaggtggagtttgttaggcgacaaaccaacac 2058745  T
Q  408 ggttactcatgctcttgcaa 427  Q
    ||||||||||||||||||||    
T  2058746 ggttactcatgctcttgcaa 2058765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 16206639 - 16206690
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  16206639 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 16206690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 387
Target Start/End: Original strand, 23379717 - 23379886
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    |||||||| |||||||||||||| ||||||||||| || ||||| |||| ||| | |||  ||  | ||||| | |||||| || | ||||| ||||| |    
T  23379717 gctttacagtggttgagtgacatgcaatttgatagcgtggatttcgaaatggattctaaattgtctgctgatgcctttctt-ctgacaggaacgacacat 23379815  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagttt 387  Q
     ||||||||||||||||   |||||||||| ||||||||||| | ||  |||||  ||||||||||||||||||    
T  23379816 ccgaatttggttgcatt---tcttcttgtcgttctttgtttactgctgtattttccaactctagggtggagttt 23379886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 23761407 - 23761362
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  23761407 tgtattgaaactctgattatcaatgaaatgctataagcatgtttct 23761362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 23789551 - 23789506
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  23789551 tgtattgaaactctgattatcaatgaaatgctataagcatgtttct 23789506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 20661105 - 20661214
Alignment:
Q  282 tgatacttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtg 381  Q
    |||||||||||| || || | |||||| | ||  ||||| |||||||||||| ||||||||| |||||  ||||  |||| ||||| || ||||||||||    
T  20661105 tgatacttttctctcaaacaagaatgaaatgtctgaattcggttgcattattacttcttgtcgttcttattttaactctttattttctacctctagggtg 20661204  T
Q  382 gagtttgtta 391  Q
    ||||||||||    
T  20661205 gagtttgtta 20661214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 23762540 - 23762495
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  23762540 tgtattgaaactctgattatcaatgaaatgctataaacatgtttct 23762495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 2058808 - 2058860
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||| |||||    
T  2058808 tacccaattgtattgaaactcttattatcaattaaatgttataagcaagtttc 2058860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 23379968 - 23380020
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||    
T  23379968 tacccaattgtattgaaactattattattaatgaaatgttataagcatgtttc 23380020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 44886212 - 44886352
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| ||||| | ||||||||| |  |||||||| ||||||| ||   | |||| |||||  |||| ||||||||||||||||||    
T  44886212 cttttctgtctactaggaacgacacatccgaatttggctctattatttcatcttgtcgtttgctttttagttctttcttttctaactctagggtggagtt 44886311  T
Q  387 tgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||  | | ||| ||||| |||| ||||||| |||||||    
T  44886312 tgttaggcgacaagtcaacgcggttgctcatgcacttgcaa 44886352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 11818637 - 11818527
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||| |||||||| || || ||||| ||| |||||| |||||  |||   ||||||||||||||||||||||  | | |||| ||||||||| |||    
T  11818637 gaatttgggtgcattatctcatcatgtcagtctctgtttagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctc 11818538  T
Q  416 atgctcttgca 426  Q
    ||| |||||||    
T  11818537 atgttcttgca 11818527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 427
Target Start/End: Complemental strand, 23761682 - 23761458
Alignment:
Q  202 ggcttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaata 301  Q
    |||||||| |||||||||||||||||   ||| || || ||||||| ||| || || ||||| || | ||||||||     ||| ||||  | |||| ||    
T  23761682 ggcttgcactcggctttacaatggtttgatgatatgcactttgataatgtggacttcgaaacagactctaagctgacggtggatgctttgttgtctacta 23761583  T
Q  302 ggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagc 401  Q
    |||| ||||| |  ||||||||||| |||||||| |||| || |||||| |||| ||||   ||| ||||||||| ||||||||||||||  | | ||||    
T  23761582 ggaacgacacatctgaatttggttgtattatttcctcttatcgttctttatttagttctacttttgttaactcta-ggtggagtttgttaggcgacaagc 23761484  T
Q  402 caacgaggttactcatgctcttgcaa 427  Q
     |||| | || |||||||||||||||    
T  23761483 aaacgggattgctcatgctcttgcaa 23761458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 427
Target Start/End: Complemental strand, 23789826 - 23789602
Alignment:
Q  202 ggcttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaata 301  Q
    |||||||| |||||||||||||||||   ||| || || ||||||| ||| || || ||||| || | ||||||||     ||| ||||  | |||| ||    
T  23789826 ggcttgcactcggctttacaatggtttgatgatatgcactttgataatgtggacttcgaaacagactctaagctgacggtggatgctttgttgtctacta 23789727  T
Q  302 ggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagc 401  Q
    |||| ||||| |  ||||||||||| |||||||| |||| || |||||| |||| ||||   ||| ||||||||| ||||||||||||||  | | ||||    
T  23789726 ggaacgacacatctgaatttggttgtattatttcctcttatcgttctttatttagttctacttttgttaactcta-ggtggagtttgttaggcgacaagc 23789628  T
Q  402 caacgaggttactcatgctcttgcaa 427  Q
     |||| | || |||||||||||||||    
T  23789627 aaacgggattgctcatgctcttgcaa 23789602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 11502315 - 11502379
Alignment:
Q  363 attttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    ||||| |||||||||||||||||||||||  | | ||||||||| |||| ||||| |||||||||    
T  11502315 attttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaa 11502379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 11553427 - 11553479
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||||||| ||||    
T  11553427 tacccgaatatattgaaactcttattattaatgaaatactataagcatatttc 11553479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 11818483 - 11818431
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| | ||||||| |||||||||| ||||||||||||||||||| ||||    
T  11818483 tacccaattatattgaacctcttattattaatgaaatgctataagcatatttc 11818431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 20661293 - 20661345
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| ||||||||| || | |||||||||||||||||||||||| |||||    
T  20661293 tacccaattgtattgaatctttgattatcaatgaaatgctataagcaagtttc 20661345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 36641459 - 36641510
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| | |||||||| | |||||||||||||||| ||||||||||||||    
T  36641459 tacccaattatattgaaattattattatcaatgaaatactataagcatgttt 36641510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 30848311 - 30848352
Alignment:
Q  435 aatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||||||| || ||||||| |||||||||||||||||||    
T  30848311 aatgtattgaatctattattattaatgaaatgctataagcat 30848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 23762730 - 23762627
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| ||||  |  |||||||| || |||||||| ||||||| |||||| |||| ||||   ||| ||||||||| |||||||||    
T  23762730 cttttctgtctactaggaacgacaaatctgaatttggctgtattatttcctcttgtcgttctttatttagttctacttttgttaactcta-ggtggagtt 23762632  T
Q  387 tgtta 391  Q
    |||||    
T  23762631 tgtta 23762627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 44886395 - 44886447
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||| ||||||||||| |  | ||||||||||||||||||||| ||||||||    
T  44886395 tacccgaatgtattgaatccttaattatcaatgaaatgctataaacatgtttc 44886447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 220 - 427
Target Start/End: Original strand, 41117039 - 41117246
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    ||||||||||| ||||| || |||||||| || ||||| ||||| || | |||| || || ||||| ||||||| ||| | ||||| ||||| | |||||    
T  41117039 caatggttgagcgacatgcagtttgatagcgtcgatttcgaaacagattctaagttgtttgctgatgcttttctctctgacaggaacgacacatccgaat 41117138  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| ||||||| | ||| |||||  |||||| |||||||||||||||  | | ||||||| |||||| |||||||    
T  41117139 ttggctgcattatttcttcttgtcgttcgttgtttactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgc 41117238  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  41117239 tcttgcaa 41117246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 204 - 427
Target Start/End: Complemental strand, 24427785 - 24427578
Alignment:
Q  204 cttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagg 303  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| || |||||||||||||    |||||||| ||||||| ||||||| |            
T  24427785 cttgcatttggctttataatggttgagtgacatgcaatttgatagcgtggattttgaaacgggtcctaagctgacttctgatgcttttctat-------- 24427694  T
Q  304 aatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagcca 403  Q
            ||  |||||||||| ||||||||||||||||  ||||||||||| ||||| ||||| |||||||||||| |||||| |||  | | ||||||    
T  24427693 --------gtctgaatttggtttcattatttcttcttgttgttctttgtttacttctttattttctaactctagggtcgagtttattaggcgacaagcca 24427602  T
Q  404 acgaggttactcatgctcttgcaa 427  Q
    | |||||  ||||| |||||||||    
T  24427601 atgaggtcgctcatactcttgcaa 24427578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 253 - 427
Target Start/End: Complemental strand, 40490271 - 40490097
Alignment:
Q  253 gattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgt 352  Q
    |||||||||||||| | ||||||||  | |||| |||||||| ||| |||||| ||||| ||||||||||| || || ||||| || |||| |||||| |    
T  40490271 gattttgaaacggactctaagctgacatatgatgcttttcttgctactaggaacgacactttcgaatttggctgtatcatttcctcatgtcgttctttat 40490172  T
Q  353 ttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||  || |  |||| |||||||||||||||||||||||  | | || |||| |||||  |||||||||||||||    
T  40490171 ttagctcattcttttctaactctagggtggagtttgttaggcgacaaaccaatgaggtcgctcatgctcttgcaa 40490097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 214 - 427
Target Start/End: Original strand, 30033426 - 30033639
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || |||||||| | ||| ||||| ||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  30033426 gctttgcaatggttgagtgatatgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 30033525  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | |||||| || |||| |    
T  30033526 ccgaatttggatgcattatttcctcatgtcgttctttgttcaatactttcttttctaactctagggtggagtttgttaggcgacaagccagcgtggttgc 30033625  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  30033626 tcatgctcttgcaa 30033639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 49372174 - 49372286
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||| || | |||| |||  |||||| ||||||| ||| | || |||||||||| |||||    
T  49372174 caatggttaagtgacatgcaatttgataatgtggattttgaaacagattctaagttgacgtctgatgcttttctctctgacagaaatgacacgtccgaat 49372273  T
Q  320 ttggttgcattat 332  Q
    |||||||||||||    
T  49372274 ttggttgcattat 49372286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 52147933 - 52147827
Alignment:
Q  286 acttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagt 385  Q
    |||||||| ||| | ||||||||||||| |||||| || ||||||||||||||||||  ||||||||||| | ||| |||||  ||||||| |||| |||    
T  52147933 acttttctctctgacaggaatgacacgtccgaattcggctgcattatttcttcttgttgttctttgtttactgctttattttccaactctaaggtgaagt 52147834  T
Q  386 ttgttat 392  Q
    |||||||    
T  52147833 ttgttat 52147827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 49372418 - 49372470
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  49372418 tacccaattgtattgaaactcttattatcaatgaaatgctataagcaagtttc 49372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 9361684 - 9361824
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| | ||| ||||||||||| |  |||||||| ||||||| ||   | |||| |||||  |||| ||||||||||||||||||    
T  9361684 cttttctgtctactaggaacggcacattcgaatttggctctattatttcatcttgtcgtttgctttttagttctttcttttctaactctagggtggagtt 9361783  T
Q  387 tgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||  | | ||||||||| |||| ||||||| |||||||    
T  9361784 tgttaggcgacaagccaacgcggttgctcatgcacttgcaa 9361824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 423
Target Start/End: Complemental strand, 21701667 - 21701560
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    ||||||||||  ||||||||||| |||| ||| ||||||  |  || ||||| |||||||||||||||||||||||  | | ||||||||| |||| |||    
T  21701667 gaatttggttctattatttcttcctgtcgttcgttgtttcgtaatttattttctaactctagggtggagtttgttaggcgataagccaacgtggttgctc 21701568  T
Q  416 atgctctt 423  Q
    ||||||||    
T  21701567 atgctctt 21701560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 30033682 - 30033733
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  30033682 tacccaattatattgaaactcttattataaatgaaatgctataagcatgttt 30033733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 41117289 - 41117340
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  41117289 tacccaattgtattcaaactattattatcaatgaaatgctataagcatgttt 41117340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 24083292 - 24083432
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| ||||| | |||||||||||  | |||||| ||||||| ||   | |||| |||||  |||| |||||||| |||||||||    
T  24083292 cttttctatctactaggaacgacacatccgaatttggttctactatttcatcttgtcgtttgctttttagttctttcttttctaactctacggtggagtt 24083391  T
Q  387 tgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||  | | ||||||||| |||| ||||||| |||||||    
T  24083392 tgttaggcgacaagccaacgcggttgctcatgcacttgcaa 24083432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 21701505 - 21701461
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||||||||| || |||||||||||||||||| |||||    
T  21701505 tgtattgaaactcttatgattaatgaaatgctataagcacgtttc 21701461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 24427528 - 24427484
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||||||||||||||  |||||||||||| |||||||    
T  24427528 tgtattgaaactcttattatcaagtaaatgctataagaatgtttc 24427484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 52147741 - 52147697
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||    
T  52147741 tgtattgaaactcttattatcaataaaatactataagcaagtttc 52147697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 6507951 - 6507904
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  6507951 tacccaaatgtattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 24065321 - 24065364
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||||||||  ||||||||| |||||||||||||||||||||||    
T  24065321 tgtattgaacttcttattattaatgaaatgctataagcatgttt 24065364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 205 - 427
Target Start/End: Complemental strand, 16582643 - 16582421
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    |||||||| ||||||||||||||||| || || || |||||||| || |||||||||| ||| | |||  ||  ||||||| ||||||||||  | ||||    
T  16582643 ttgcattcagctttacaatggttgagcgatatgcagtttgatagcgtggattttgaaatggattctaaattgtcttctgatgcttttctttccgacagga 16582544  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaa 404  Q
    | ||||| | ||||||||| || |||||||||||||||| || |||||||| |  || |||||  |||| |||||||||||||||    | | |||||||    
T  16582543 acgacacatccgaatttggctgtattatttcttcttgtcgttatttgtttactgttttattttccaactttagggtggagtttgtcgggcgacaagccaa 16582444  T
Q  405 cgaggttactcatgctcttgcaa 427  Q
    ||||| | |||||||||||||||    
T  16582443 cgaggctgctcatgctcttgcaa 16582421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 427
Target Start/End: Complemental strand, 20528084 - 20527862
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    ||||| ||||||||| | ||||||  ||| || || ||||||||||| || || |||||||| | ||||||||    |||| ||||||| |||| | |||    
T  20528084 ttgcactcggctttagagtggttggatgatatgcattttgatagtgtggacttcgaaacggactctaagctgacgattgatgcttttctgtctactcgga 20527985  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaa 404  Q
    | ||||| || |||||| |||| |||||||| ||||||| |||||| |||| ||||   ||| ||||||||||||||||||||||||  |   |||| ||    
T  20527984 acgacacatttgaatttagttgtattatttcctcttgtcgttctttatttagttctacttttgttaactctagggtggagtttgttaggcggcaagctaa 20527885  T
Q  405 cgaggttactcatgctcttgcaa 427  Q
    || |||| |||||||||||||||    
T  20527884 cggggttgctcatgctcttgcaa 20527862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 214 - 427
Target Start/End: Original strand, 30859207 - 30859420
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || |||||||| | ||| ||||| ||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  30859207 gctttgcaatggttgagtgatatgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 30859306  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  30859307 ccgaatttggatgcattatttcctcatgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgc 30859406  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  30859407 tcatgctcttgcaa 30859420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 55227557 - 55227669
Alignment:
Q  315 cgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttact 414  Q
    ||||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | || |||||| |||| ||    
T  55227557 cgaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaaaccaacgtggttgct 55227656  T
Q  415 catgctcttgcaa 427  Q
    |||||||||||||    
T  55227657 catgctcttgcaa 55227669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 55227712 - 55227763
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  55227712 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 55227763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 30859463 - 30859513
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtt 479  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  30859463 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgtt 30859513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 423
Target Start/End: Complemental strand, 30191243 - 30191034
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || || ||||| | ||| ||||||||||| || | |||| |||   ||||  | || |||||||  | ||| |||  ||    
T  30191243 gctttgcaatggttgagtgatatgcagtttgacaatgtggattttgaaacagactctaagttgacagctgacgccttcctttctaccatgaacgacttgt 30191144  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||  || |||| ||||||||| | | |||  |||| ||||| |||||||||||||||||  ||| ||||||||| |||| |    
T  30191143 ccgaatttggctgcattattttctcctgtcgttctttgttcagtacttccttttctaactttagggtggagtttgttaggcaacaagccaacgtggttgc 30191044  T
Q  414 tcatgctctt 423  Q
    ||||||||||    
T  30191043 tcatgctctt 30191034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 16431526 - 16431438
Alignment:
Q  339 ttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    ||||| ||||||||||| || || ||||| |||||||||||||||||||||||  | | || |||||||||||  ||||||||||||||    
T  16431526 ttgtcgttctttgtttacttttttattttctaactctagggtggagtttgttaggcgacaaaccaacgaggttgttcatgctcttgcaa 16431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 20527811 - 20527767
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  20527811 tgtattgaaactcttattatcaatgaaatgctataagtatgtttc 20527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 14264147 - 14264191
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  14264147 tgtattaaaactcttattattaatgaaatgctataagcatgtttc 14264191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 30190984 - 30190936
Alignment:
Q  432 ccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  30190984 ccaattgtattgaaactcttattattaatgaaatgttataagcatgttt 30190936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 426
Target Start/End: Original strand, 4235259 - 4235369
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    ||||||||||  |||||||||| ||||| |||||||||   |  || ||||| |||||||||||||||||||||||  | | ||||||||| | |  |||    
T  4235259 gaatttggttctattatttctttttgtcgttctttgttccataatttattttctaactctagggtggagtttgttaggccacaagccaacgcgatggctc 4235358  T
Q  416 atgctcttgca 426  Q
    |||||||||||    
T  4235359 atgctcttgca 4235369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 13686116 - 13686160
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  13686116 tgtattgaatctcttattattaatgaaatgctataagcatatttc 13686160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 16431387 - 16431343
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||    
T  16431387 tgtattgaaattcttattattaatgaaatgttataagcatgtttc 16431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 18878282 - 18878320
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagca 475  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  18878282 tgtattgaaactattattattaatgaaatgctataagca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 391
Target Start/End: Original strand, 54823552 - 54823690
Alignment:
Q  253 gattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgt 352  Q
    ||||||||||| || | |||| ||||  ||||| |||| ||||||| ||||||||||  || | ||||| | || |||||||| || |||| ||||||||    
T  54823552 gattttgaaacagactctaagttgatagctgatgctttcctttctactaggaatgacttgtccaaatttagctgtattatttcctcctgtcgttctttgt 54823651  T
Q  353 ttatttcttgattttttaactctagggtggagtttgtta 391  Q
    | |   |||  |||| ||||||||||||| |||||||||    
T  54823652 tcagcactttcttttctaactctagggtgaagtttgtta 54823690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 4227939 - 4227891
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 485  Q
    |||||||||||| |||| || ||||||||||||||| || |||||||||    
T  4227939 tgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 4227891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 16582370 - 16582326
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||| ||||||| ||||| ||||||||| ||||||||    
T  16582370 tgtattgaaactattattattaatgatatgctataatcatgtttc 16582326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 27066378 - 27066330
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 485  Q
    |||||||||||| | ||||| ||||||||||||||||||  ||||||||    
T  27066378 tgtattgaaactttgattattaatgaaatgctataagcacatttctctc 27066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 27087479 - 27087431
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 485  Q
    |||||||||||| | ||||| ||||||||||||||||||  ||||||||    
T  27087479 tgtattgaaactttgattattaatgaaatgctataagcacatttctctc 27087431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 220 - 427
Target Start/End: Original strand, 15633079 - 15633286
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||| || | |||  ||  | ||||| ||||||| ||  | ||||| ||||||| |||||    
T  15633079 caatggttgagcgacatgcagtttgatagtgtggatttcgaaacagattctaaattgtctgctgattcttttctctccgacaggaacgacacgtccgaat 15633178  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| ||||| | | ||| |||||  |||||| |||||||||||||||  | | ||||||| |||||| ||||| |    
T  15633179 ttggctgcattatttcttcttgtcgttcgttgttcactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatac 15633278  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  15633279 tcttgcaa 15633286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 220 - 427
Target Start/End: Complemental strand, 13015253 - 13015046
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    |||| |||||| ||||| || ||||||||||| ||||| ||||| || | |||  ||  | ||||| ||||||| ||  | ||||| ||||| | || ||    
T  13015253 caatagttgagcgacatgcagtttgatagtgtggatttcgaaacagattctaaattgtctgctgatgcttttctctccgacaggaacgacacatccggat 13015154  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| ||||| | | ||| |||||  |||||| ||||| |||||||||  | | |||||||||||||| |||||||    
T  13015153 ttggctgcattatttcttcttgtctttcattgttcactgctttattttccaactctcgggtgtagtttgttaggcgacaagccaacgaggttgctcatgc 13015054  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  13015053 tcttgcaa 13015046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 205 - 391
Target Start/End: Original strand, 11342928 - 11343113
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    |||||| |||| || |||||||||||| | || |||||||| |||||  ||||||||||||| | |||||| |   ||||| ||||  |||||| ||| |    
T  11342928 ttgcatccggccttgcaatggttgagtaatatgcaatttgacagtgtgaattttgaaacggattctaagctaacaactgatgctttcatttctactagaa 11343027  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||||| |||| ||||   ||||  ||||||| | ||||||||||||    
T  11343028 atgacacgtccgaatttggttgcatta-ttcttcttgttgttctttatttagttctactttttccaactctatgatggagtttgtta 11343113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 13015003 - 13014952
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  13015003 tacccaattgtattgaaactattattatcaatgaaatgctataagcatgttt 13014952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 15633329 - 15633380
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  15633329 tacccaattgtattgaaactattattatcaatgaaatgctataagcatgttt 15633380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 4646146 - 4646036
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    ||||||||||||||||||| ||| |||| ||||||||||     || ||||| |||||||||| ||||||||||||  | | ||||||||| ||||| ||    
T  4646146 gaatttggttgcattattttttcctgtcgttctttgtttcgcaatttattttctaactctaggatggagtttgttaagcgacaagccaacgcggttattc 4646047  T
Q  416 atgctcttgca 426  Q
    |||||||||||    
T  4646046 atgctcttgca 4646036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 427
Target Start/End: Original strand, 32480162 - 32480272
Alignment:
Q  317 aatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactca 416  Q
    ||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| ||||    
T  32480162 aatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctca 32480261  T
Q  417 tgctcttgcaa 427  Q
    | |||||||||    
T  32480262 tactcttgcaa 32480272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 3896573 - 3896617
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  3896573 tgtattgaaactcttattattaatgaaatgctataagcatgtttc 3896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 48770212 - 48770264
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  48770212 tacccgaatgtattgaaactcttattattaatgaaatgctataagcatatttc 48770264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 32480323 - 32480366
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  32480323 tgtattgaaactcttattattaatgaaatgctataagcatgttt 32480366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 427
Target Start/End: Complemental strand, 3205436 - 3205214
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    |||||||| | | ||||||||||||||||||| || ||||||| ||| ||||||||||| || |  ||| |||   ||||| |||| || ||||  ||||    
T  3205436 ttgcattctgttgtacaatggttgagtgacatgcagtttgataatgtggattttgaaacagactcaaagttgacagctgatgctttcctctctagcagga 3205337  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaa 404  Q
    | |||  || |||||||| ||| || ||||||||||||| ||  ||||| | |  ||  |||| ||||| || ||||||||||||||  | | || ||||    
T  3205336 acgacttgtccgaatttgtttgtatcatttcttcttgtcgtttgttgttcagtaatttcttttctaactttatggtggagtttgttaggcgacaacccaa 3205237  T
Q  405 cgaggttactcatgctcttgcaa 427  Q
    || |||| |||||||||||||||    
T  3205236 cgtggttgctcatgctcttgcaa 3205214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 17238896 - 17238756
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| ||||| | | ||||||| |  |||||||| ||||||| ||   | |||| |||||  |||| ||||||||||||||||||    
T  17238896 cttttctgtctactaggaacgacacatccaaatttggctctattatttcatcttgtcgtttgctttttagttctttcttttctaactctagggtggagtt 17238797  T
Q  387 tgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||  | | ||||||||| |||| ||||||| |||||||    
T  17238796 tgttaggcgacaagccaacgcggttgctcatgcacttgcaa 17238756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 30502614 - 30502657
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  30502614 tgtattgaaactcttattattaatgaaatgttataagcatgttt 30502657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 391
Target Start/End: Original strand, 41601379 - 41601454
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    ||||||||||  ||||||||||| |||| ||||||||||  |  || ||||| |||||||||||||||||||||||    
T  41601379 gaatttggttctattatttcttcctgtcgttctttgtttcgtaatttattttctaactctagggtggagtttgtta 41601454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 11343192 - 11343245
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||| ||| |||||    
T  11343192 taccctaatatattgaaacacttattatcaatgaaatgctataaacatatttct 11343245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 8118839 - 8118787
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||| ||| |||| |||||||||||||||||||||| ||||    
T  8118839 tacccaattgtattgagactattatgatcaatgaaatgctataagcatctttc 8118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 17238713 - 17238661
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||| ||||||||||| |  | ||||||||||||||||||||||||||||||    
T  17238713 tacccgaatgtattgaatccttaattatcaatgaaatgctataagcatgtttc 17238661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 485
Target Start/End: Original strand, 27810644 - 27810692
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 485  Q
    |||||||||||| ||||||| |||||||| |||||||||| ||||||||    
T  27810644 tgtattgaaactattattataaatgaaattctataagcatatttctctc 27810692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 47081692 - 47081640
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||| ||| |||| |||||||||||||||||||||| ||||    
T  47081692 tacccaattgtattgagactattatgatcaatgaaatgctataagcatctttc 47081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 24226354 - 24226291
Alignment:
Q  363 attttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgca 426  Q
    ||||| || ||||||||||||||||||||  | | ||||||||| |||| ||||||||||||||    
T  24226354 attttctagctctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgca 24226291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Original strand, 26016628 - 26016675
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||| |||||||||  ||||||||| |||||||||||||||||||    
T  26016628 tacccaattgtattgaatatcttattattaatgaaatgctataagcat 26016675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 29961966 - 29962007
Alignment:
Q  435 aatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||||||| || ||||||| |||||||||||||||||||    
T  29961966 aatgtattgaatctattattattaatgaaatgctataagcat 29962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 48100772 - 48100727
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||  ||||||||| ||||||||||||||||||| |||||    
T  48100772 tgtattgaatatcttattattaatgaaatgctataagcatatttct 48100727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 24226239 - 24226203
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataag 473  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  24226239 tgtatttaaactcttattattaatgaaatgctataag 24226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 41601533 - 41601585
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||||||| |||| || | |||||||||||||||| |||||    
T  41601533 tacccaattgtattgaaactattatgatgagtgaaatgctataagcacgtttc 41601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 214 - 391
Target Start/End: Complemental strand, 38015358 - 38015181
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    |||||||||||| | |||||||| || ||||||| ||| |||||||||||| | | |||| |||   ||||| ||||||| ||| | | |||  ||||||    
T  38015358 gctttacaatggctcagtgacatgcagtttgataatgtggattttgaaacgaattctaagttgacggctgatgcttttctctctgacaagaacaacacgt 38015259  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
      |||||||||||||||||| ||| ||||| |||||||||||  |||| ||||| |||||||| ||||||||||||||    
T  38015258 gtgaatttggttgcattattacttattgtcgttctttgtttaactctttattttctaactctatggtggagtttgtta 38015181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 214 - 427
Target Start/End: Complemental strand, 6006331 - 6006118
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || |||||||| | ||| ||||| ||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  6006331 gctttgcaatggttgagtgatatgcaatttgacaatgtggatttcgaaacagactctaagttgacagctgaagccttcctttctactagaaacgacttgt 6006232  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     |||| |||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  6006231 ccgaacttggatgcattatttcctcatgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggtttc 6006132  T
Q  414 tcatgctcttgcaa 427  Q
    ||||||||||||||    
T  6006131 tcatgctcttgcaa 6006118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 427
Target Start/End: Complemental strand, 16739720 - 16739513
Alignment:
Q  220 caatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgttcgaat 319  Q
    ||||||||||| |||||  | ||||||||||| ||||| ||||| || | |||  ||  | ||||| ||||||| ||  | ||||| ||||| | |||||    
T  16739720 caatggttgagcgacatgaagtttgatagtgtggatttcgaaacagattctaaattgtctgctgatgcttttctctccgacaggaaagacacatccgaat 16739621  T
Q  320 ttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgc 419  Q
    |||| ||||||||||||||||||| ||| ||||| | | ||| |||||  |||||| |||||||||||||||  | | || |||||||| || || ||||    
T  16739620 ttggctgcattatttcttcttgtcgttcgttgttcactactttattttccaactctcgggtggagtttgttaggcgacaaaccaacgagattgctaatgc 16739521  T
Q  420 tcttgcaa 427  Q
    ||||||||    
T  16739520 tcttgcaa 16739513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 16739470 - 16739419
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  16739470 tacccaattgtattgaaactattattatcaatgaaatgctataagcatgttt 16739419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 17790098 - 17790209
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |||    
T  17790098 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 17790197  T
Q  416 atgctcttgcaa 427  Q
    | ||||||||||    
T  17790198 acgctcttgcaa 17790209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 17790252 - 17790303
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  17790252 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 17790303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 19098540 - 19098651
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    |||||||| ||||||||||| || |||| ||||||||| | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |||    
T  19098540 gaatttggatgcattatttcctcctgtcgttctttgttcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctc 19098639  T
Q  416 atgctcttgcaa 427  Q
    | ||||||||||    
T  19098640 acgctcttgcaa 19098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 19098694 - 19098745
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  19098694 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgttt 19098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 29372993 - 29372946
Alignment:
Q  428 ttacccaaatgtattgaaactcttattatcaatgaaatgctataagca 475  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  29372993 ttacccgaatgtattgaaactcttattatcaatgaaatgctataagca 29372946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 479
Target Start/End: Complemental strand, 6006075 - 6006025
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtt 479  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  6006075 tacccaattgtattgaaactcttattataaatgaaatgctataagcatgtt 6006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 214 - 428
Target Start/End: Original strand, 31228082 - 31228296
Alignment:
Q  214 gctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaataggaatgacacgt 313  Q
    ||||| |||||||||||||| || || ||||| | ||| ||||| ||||| || | |||| |||   ||||  | || ||||||| ||| || |||  ||    
T  31228082 gctttgcaatggttgagtgatatgcagtttgacaatgtggatttcgaaacagactctaagttgacaactgaagccttcctttctactagaaacgacttgt 31228181  T
Q  314 tcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttac 413  Q
     ||||||||| ||||||||||| ||  ||| |||||| || | | |||  |||| |||||||||||||||||||||||  | | ||||||||| |||| |    
T  31228182 ccgaatttggatgcattatttcctcccgtcgttctttattcagtactttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgc 31228281  T
Q  414 tcatgctcttgcaat 428  Q
    |||||||||||||||    
T  31228282 tcatgctcttgcaat 31228296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 53437645 - 53437690
Alignment:
Q  439 tattgaaactcttattatcaatgaaatgctataagcatgtttctct 484  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  53437645 tattgaaactcttattattaatgaaatgctataagcatgtttctct 53437690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 31228346 - 31228389
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  31228346 tgtattgaaactcttattataaatgaaatgctataagcatgttt 31228389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 426
Target Start/End: Complemental strand, 31661148 - 31661057
Alignment:
Q  335 cttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgca 426  Q
    ||||||||| ||||||||||  |  || ||||| |||||||||||||||||||||||  | | ||||||||| |||| ||||||||||||||    
T  31661148 cttcttgtcgttctttgtttcgtaatttattttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgca 31661057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 426
Target Start/End: Original strand, 31809108 - 31809218
Alignment:
Q  316 gaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactc 415  Q
    ||||||||||  |||||||||||||||| ||||||||||  |  || |||||  ||||||||||||||||||||||  | | ||||||||| |||  |||    
T  31809108 gaatttggttctattatttcttcttgtcgttctttgtttcgtaatttattttccaactctagggtggagtttgttaggcgacaagccaacgcggtggctc 31809207  T
Q  416 atgctcttgca 426  Q
    || ||||||||    
T  31809208 atcctcttgca 31809218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 439 - 481
Target Start/End: Original strand, 53394944 - 53394986
Alignment:
Q  439 tattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  53394944 tattgaaactcttattattaatgaaatgctataagcatgtttc 53394986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 31935205 - 31935296
Alignment:
Q  335 cttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgca 426  Q
    ||||||||| ||||||||||  |  || ||||| |||||||||||||||||||||||  | | |||||||||  ||| ||||||||||||||    
T  31935205 cttcttgtcgttctttgtttcgtaatttattttctaactctagggtggagtttgttaggcgacaagccaacgcagttgctcatgctcttgca 31935296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 31973463 - 31973554
Alignment:
Q  335 cttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgca 426  Q
    ||||||||| ||||||||||  |  || ||||| |||||||| ||||||||||||||  | | ||||||||| |||| ||||||||||||||    
T  31973463 cttcttgtcgttctttgtttcgtaatttattttctaactctatggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgca 31973554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 35906972 - 35906925
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||||    
T  35906972 tacccaattgtattgaaactatcattatcaatgaaatgctataagcat 35906925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 8566114 - 8566166
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||| |||||||| ||| |||| |||||||||||||||||||||| ||||    
T  8566114 tacccaattgtattgagactattatgatcaatgaaatgctataagcatctttc 8566166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 19602951 - 19602903
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 485  Q
    |||||| || |||||||||| ||||||||||||||||||||| ||||||    
T  19602951 tgtatttaatctcttattattaatgaaatgctataagcatgtctctctc 19602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 38015095 - 38015051
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  38015095 tgtattgaatctcttattatcaatgaaatgctataaacaagtttc 38015051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 53437481 - 53437557
Alignment:
Q  315 cgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    ||||||||||||||||||||| ||||| | ||| ||||| |   |||  |||| |||||||||||||||||||||||    
T  53437481 cgaatttggttgcattatttcctcttgccgttcgttgttcagcactttcttttctaactctagggtggagtttgtta 53437557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Complemental strand, 16878002 - 16877963
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  16878002 tgtattgaaactattattattaatgaaatgctataagcat 16877963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 49644570 - 49644621
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    ||||| ||||||||||| |  | |||||||||||||||||||||||||||||    
T  49644570 tacccgaatgtattgaatccttaattatcaatgaaatgctataagcatgttt 49644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 53394757 - 53394852
Alignment:
Q  292 ctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagttt 387  Q
    |||||||  |||||||||  || ||||||||||||||||||||| ||||||| ||| ||||| |    ||  |||| |||||||||||||||||||    
T  53394757 ctttctagcaggaatgacttgtccgaatttggttgcattatttcctcttgtcgttcgttgttcagcagtttcttttctaactctagggtggagttt 53394852  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 391
Target Start/End: Original strand, 49643731 - 49643917
Alignment:
Q  205 ttgcattcggctttacaatggttgagtgacatacaatttgatagtgtagattttgaaacggagtttaagctgatttctgatacttttctttctaatagga 304  Q
    ||||| |||||| |||||||| | ||||| || ||  | ||| |||| ||||||||||| || |  |||||||  || ||  ||||||| |||| |||||    
T  49643731 ttgcactcggctctacaatggctaagtgatatgcagatggatggtgtggattttgaaactgattcgaagctgacatcagacgcttttctgtctactagga 49643830  T
Q  305 atgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtttgtta 391  Q
    | ||||| | ||||||||  |  |||||||| ||||||| ||   | |||| ||||| ||||| ||||| |||||||||||||||||    
T  49643831 acgacacatccgaatttgactctattatttcatcttgtcgtttgctttttagttctttattttctaactatagggtggagtttgtta 49643917  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 12526620 - 12526575
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||| ||||||| ||||||||||||||| ||| |||||    
T  12526620 tgtattgaaactattattattaatgaaatgctataaacatctttct 12526575  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 42626153 - 42626198
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttct 482  Q
    |||||||||||| ||||||| ||| ||||||||||||||| |||||    
T  42626153 tgtattgaaactattattattaataaaatgctataagcatctttct 42626198  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 14485651 - 14485691
Alignment:
Q  436 atgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  14485651 atgtattgaacctattattattaatgaaatgctataagcat 14485691  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 18357208 - 18357260
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    ||||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||    
T  18357208 tacccgaatatattgaatctcttattattcatgaaatgctataagcatatttc 18357260  T

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Target: scaffold0040 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 62520 - 62477
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgttt 480  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  62520 tgtattgaaactcttattattaatgaaatgctataagcatgttt 62477  T

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Target: scaffold0789 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 4248 - 4204
Alignment:
Q  437 tgtattgaaactcttattatcaatgaaatgctataagcatgtttc 481  Q
    |||||||||||| |||||||||||||||||||||||||| |||||    
T  4248 tgtattgaaactattattatcaatgaaatgctataagcacgtttc 4204  T

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Target: scaffold0789; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 4363 - 4300
Alignment:
Q  363 attttttaactctagggtggagtttgttattcaaaaagccaacgaggttactcatgctcttgca 426  Q
    ||||| |||||||||||||||||||||||  | | ||||||| |||||| |||||||| |||||    
T  4363 attttctaactctagggtggagtttgttaggcgacaagccaaagaggttgctcatgctattgca 4300  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 191227 - 191087
Alignment:
Q  287 cttttctttctaataggaatgacacgttcgaatttggttgcattatttcttcttgtcattctttgtttatttcttgattttttaactctagggtggagtt 386  Q
    ||||||| |||| |||||| ||||| | | ||||||| |  |||||||| ||||||| ||   | |||| |||||  |||| ||||||||||||||||||    
T  191227 cttttctgtctactaggaacgacacatccaaatttggctctattatttcatcttgtcgtttgctttttagttctttcttttctaactctagggtggagtt 191128  T
Q  387 tgttattcaaaaagccaacgaggttactcatgctcttgcaa 427  Q
    |||||  | | ||||||||| |||| ||||||| |||||||    
T  191127 tgttaggcgacaagccaacgcggttgctcatgcacttgcaa 191087  T

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Target: scaffold0341 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 1976 - 1929
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  1976 tacccaaatgtattgaacctgttattattaatgaaatgttataagcat 1929  T

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Target: scaffold0341; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 9632 - 9585
Alignment:
Q  429 tacccaaatgtattgaaactcttattatcaatgaaatgctataagcat 476  Q
    ||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  9632 tacccaaatgtattgaacctgttattattaatgaaatgttataagcat 9585  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 34703 - 34735
Alignment:
Q  447 ctcttattatcaatgaaatgctataagcatgtt 479  Q
    |||||||||| ||||||||||||||||||||||    
T  34703 ctcttattattaatgaaatgctataagcatgtt 34735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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