View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_92 (Length: 204)
Name: NF7550_high_92
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_92 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 29320958 - 29320792
Alignment:
| Q |
25 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttacaaattacacagaattgcacata |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
29320958 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatcaatcttttacaaataacacagaattgcacata |
29320859 |
T |
|
| Q |
125 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtatattctt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29320858 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttctt |
29320792 |
T |
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Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 9337401 - 9337567
Alignment:
| Q |
25 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttacaaattacacagaattgcacata |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
9337401 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatacgagtaaattacaaattatctatcttttacaaactacacagagttgcacata |
9337500 |
T |
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| Q |
125 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtatattctt |
191 |
Q |
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| T |
9337501 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttctt |
9337567 |
T |
|
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Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 40149867 - 40149701
Alignment:
| Q |
25 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttacaaattacacagaattgcacata |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
40149867 |
ttcttattcttaaagagaagaataagaatcaaacttcaatcaaacatacgagtaaattacaaattatctatcttttacaaactacacagagttgcacata |
40149768 |
T |
|
| Q |
125 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtatattctt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40149767 |
ggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttctt |
40149701 |
T |
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Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38477189 - 38477114
Alignment:
| Q |
25 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatctttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
38477189 |
ttcttattcttaaagagaagaataagaatcaatcttcaatcaagcatacgagtaatttacaaattatctatctttt |
38477114 |
T |
|
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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 14417253 - 14417345
Alignment:
| Q |
104 |
aattacacagaattgcacataggaatgaaatgtttgaaaatac---attcatattcatactccttctc--ccattatccatacgtatattctt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
14417253 |
aattacacagaattgcacataggaatgaaatgtttgaaaatacataattcatattcataccccttctctttcattatccatacgtattttctt |
14417345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 14270856 - 14270948
Alignment:
| Q |
104 |
aattacacagaattgcacataggaatgaaatgtttgaaaatac---attcatattcatactccttctc--ccattatccatacgtatattctt |
191 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
14270856 |
aattacacagaattgcacatcggaatgaaatgtttgaaaatacataattcatattcataccccttctctttcattatccatacgtattttctt |
14270948 |
T |
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