View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_10 (Length: 601)
Name: NF7550_low_10
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 20 - 592
Target Start/End: Complemental strand, 14039817 - 14039245
Alignment:
| Q |
20 |
acccggcgaatccaatgccctagccgtaccccccaagtggtcaggccgtctatggggacgtaccctctgctctcaagattccaccggaaaattctcctgt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14039817 |
acccggcgaatccaatgccctagccgtaccccccaagtggtcaggccgtctatggggacgtaccctctgctctcaagattccaccggaaaattctcatgt |
14039718 |
T |
|
| Q |
120 |
gttaccgctgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccagctacattagccgagtttacacttaatggtgcaaacggac |
219 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14039717 |
gttaccggtgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccagctacattagccgagtttacacttaacggtgcaaacggac |
14039618 |
T |
|
| Q |
220 |
ttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttg |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039617 |
ttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttg |
14039518 |
T |
|
| Q |
320 |
catggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatcca |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14039517 |
catggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatcca |
14039418 |
T |
|
| Q |
420 |
caatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacg |
519 |
Q |
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| T |
14039417 |
caatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacg |
14039318 |
T |
|
| Q |
520 |
cttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtcccacaggttc |
592 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14039317 |
cttatgatgatgaaacaagcacttttacttgtgattctgctgattatactatcactttttgtcccacaagttc |
14039245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 587
Target Start/End: Complemental strand, 18954788 - 18954221
Alignment:
| Q |
20 |
acccggcgaatccaatgccctagccgtaccccccaagtggtcaggccgtctatggggacgtaccctctgctctcaagattccaccggaaaattctcctgt |
119 |
Q |
| |
|
||||||||| || || |||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
18954788 |
acccggcgagtcgaacaccctcgccgtaccccccaagtggtccggccgtctatggggccgaaccctatgctctcaagattccaccggaaaattctcatgt |
18954689 |
T |
|
| Q |
120 |
gttaccgctgactgtgcttcctcgtccatagaatgtaatggaggaaacgctcaaccgccagctacattagccgagtttacacttaatggtgcaaacggac |
219 |
Q |
| |
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||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| || ||| |||| |
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| T |
18954688 |
gttactggcgactgtgcttcctccaccatagaatgtgttggaggaaacgctcaaccgccagcaacattagcagagtttacacttaacggcgcaggtggac |
18954589 |
T |
|
| Q |
220 |
ttgatttcttcgacgttagtctcgtggacggttacaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttg |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
18954588 |
ttgatttcttcgacgttagtctcgttgacggttacaacctcccgttgttgatcaaaccacgtggagcaaccgggggtggaaactgcatgacaacaggttg |
18954489 |
T |
|
| Q |
320 |
catggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatcca |
419 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||| |
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| T |
18954488 |
catggtggatttgaacacggcgtgtccaaccgagttgaaagtgatgagtaacggaagcagtgtagcgtgtaaaagcgcgtgtgaagcgtttggagatctg |
18954389 |
T |
|
| Q |
420 |
caatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacg |
519 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||| || || |||||||| ||||| || |||||||| || | |
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|
| T |
18954388 |
caatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaattctttaagagtgcatgtccacgtgcttatagttatg |
18954289 |
T |
|
| Q |
520 |
cttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtcccaca |
587 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |||||||| |||||||||||||||||| |
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|
| T |
18954288 |
cttatgatgatggaacaagcactttcgcttgtgcttctgcagattataccatcactttttgtcccaca |
18954221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 387 - 551
Target Start/End: Complemental strand, 31945163 - 31944999
Alignment:
| Q |
387 |
tgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttt |
486 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||| | |||| | || || ||||||||||||||||| ||||| | |
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|
| T |
31945163 |
tgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttct |
31945064 |
T |
|
| Q |
487 |
tcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttttacttgt |
551 |
Q |
| |
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||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||| || |||||| |
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| T |
31945063 |
tcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttgt |
31944999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 8e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 57 - 587
Target Start/End: Original strand, 8797838 - 8798380
Alignment:
| Q |
57 |
tggtcaggccgtctatggggacgtaccctctgctctcaagattccaccggaaaattctcctgtgttaccgctgactgtgcttcctcgtccatagaatgta |
156 |
Q |
| |
|
||||| |||||| |||||||||| || |||||||| ||||| |||| ||||||||||| || | |||| ||||||| |||||| |||| |||||| |
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| T |
8797838 |
tggtccggccgtgtatggggacgaacactctgctcccaagaccccactggaaaattctcatgcatcaccggcgactgtgattcctccaccatcgaatgtg |
8797937 |
T |
|
| Q |
157 |
atggaggaaacgctcaaccgccagctacattagccgagtttacacttaatggtgcaaacggacttgatttcttcgacgttagtctcgtggacggttacaa |
256 |
Q |
| |
|
||| |||||||| ||| || || |||||||| || || ||||| || ||| | ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8797938 |
ccggaagaaacgctataccaccggcaacattagcagaattcacactcaacggttccggaggacttgatttcttcgacgttagtctcgtcgacggttacaa |
8798037 |
T |
|
| Q |
257 |
cctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttg |
356 |
Q |
| |
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|||||||| | ||||||||||| || | |||||| ||||||||||||| | |||| |||||| || || || |||||||| ||||| | |||||| |
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|
| T |
8798038 |
tctcccaatattaatcgaaccacacggtgaaaccggcggcggaaactgcacggcaacgggttgctccgtcgacttaaacgcggcgtgtccgatggagttg |
8798137 |
T |
|
| Q |
357 |
aaagtgatgagtaat------ggcggag------gtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacg |
444 |
Q |
| |
|
|||||||| |||| | ||||| | | || ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| | |
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|
| T |
8798138 |
aaagtgataagtagtaataacggcggtgaagagagcgtggcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatg |
8798237 |
T |
|
| Q |
445 |
cttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttt |
544 |
Q |
| |
|
||| || |||| || || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
8798238 |
gttccccggatacgtgtaaaccaagttcctactcgcagttttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatggaactagcacttt |
8798337 |
T |
|
| Q |
545 |
tacttgtgattctgctgattatactatcactttttgtcccaca |
587 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
8798338 |
cacttgtgcttctgctgattataccatcactttttgccccaca |
8798380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 584
Target Start/End: Original strand, 8810846 - 8810923
Alignment:
| Q |
507 |
gcttatagctacgcttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtccc |
584 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||| | |||||||||||| ||||| ||||||||| |
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|
| T |
8810846 |
gcttatagttacgcttatgatgataaaactagcacttttacttgttctggtgctgattatacaatcacattttgtccc |
8810923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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