View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_100 (Length: 208)

Name: NF7550_low_100
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_100
NF7550_low_100
[»] chr8 (2 HSPs)
chr8 (33-203)||(41867077-41867234)
chr8 (46-86)||(14822045-14822085)
[»] chr3 (5 HSPs)
chr3 (78-203)||(10986859-10986984)
chr3 (65-110)||(7820672-7820717)
chr3 (63-110)||(43102131-43102178)
chr3 (63-100)||(33149777-33149814)
chr3 (6-34)||(10986782-10986810)
[»] chr7 (5 HSPs)
chr7 (111-203)||(1973347-1973439)
chr7 (36-111)||(1971018-1971093)
chr7 (33-86)||(46673696-46673749)
chr7 (171-203)||(1973506-1973538)
chr7 (46-86)||(48671303-48671343)
[»] chr2 (3 HSPs)
chr2 (63-115)||(42028515-42028567)
chr2 (65-108)||(18342984-18343027)
chr2 (82-115)||(34039496-34039529)
[»] chr6 (1 HSPs)
chr6 (63-107)||(9101615-9101659)
[»] chr4 (1 HSPs)
chr4 (63-110)||(15446454-15446501)
[»] chr1 (1 HSPs)
chr1 (63-105)||(6709955-6709997)
[»] chr5 (1 HSPs)
chr5 (171-203)||(43285268-43285300)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 41867077 - 41867234
Alignment:
Q  33 tggactaataacttatgataaattctataatcatcttcttccctcttcatcttccaacttcatacccaaaacaaaaaataataacccacatcagcaatct 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  41867077 tggactaataacttatgataaattctataatcatcttcttccctcttc-------------atacccaaaacaaaaaataataactcacatcagcaatct 41867163  T
Q  133 ccattacattccaagcaacacgcgcattacaagaaccaaaaccaatgaacttcatcaacaaacaaaacagt 203  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41867164 ccattacattccaagcaacacacgcattacaagaaccaaaaccaatgaacttcatcaacaaacaacacagt 41867234  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 14822045 - 14822085
Alignment:
Q  46 tatgataaattctataatcatcttcttccctcttcatcttc 86  Q
    |||||||| ||||||  ||||||||||||||||||||||||    
T  14822045 tatgataacttctattgtcatcttcttccctcttcatcttc 14822085  T

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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 10986859 - 10986984
Alignment:
Q  78 ttcatcttccaacttcatacccaaaacaaaaaataataacccacatcagcaatctccattacattccaagcaacacgcgcattacaagaaccaaaaccaa 177  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  10986859 ttcatcttccaacttcatacccaaaacaaaaactaataactcacatcagcaatctccattacattccaagcaacacgcacattacaagaaccaaaaacaa 10986958  T
Q  178 tgaacttcatcaacaaacaaaacagt 203  Q
    ||||||||||||||||||||||||||    
T  10986959 tgaacttcatcaacaaacaaaacagt 10986984  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 7820672 - 7820717
Alignment:
Q  65 atcttcttccctcttcatcttccaacttcatacccaaaacaaaaaa 110  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||    
T  7820672 atcttcttccctcttcatctcccaacttcatacccaaaaaaaaaaa 7820717  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 43102131 - 43102178
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcatacccaaaacaaaaaa 110  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||    
T  43102131 tcatcttcttccctctttttcttctaacttcatacccaaaacaaaaaa 43102178  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 33149777 - 33149814
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcataccca 100  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  33149777 tcatcttcttccctcttcatcttccaacttcatcccca 33149814  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 10986782 - 10986810
Alignment:
Q  6 tgtcagttaagattaatgatcaacggttg 34  Q
    |||||||||||||||||||||||||||||    
T  10986782 tgtcagttaagattaatgatcaacggttg 10986810  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 1973347 - 1973439
Alignment:
Q  111 taataacccacatcagcaatctccattacattccaagcaacacgcgcattacaagaaccaaaaccaatgaacttcatcaacaaacaaaacagt 203  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1973347 taataactcacatcaacaatctccattacattccaagcaacacacgcattacaagaaccaaaaccaatgaacttcatcaacaaacaaaacagt 1973439  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 1971018 - 1971093
Alignment:
Q  36 actaataacttatgataaattctataatcatcttcttccctcttcatcttccaacttcatacccaaaacaaaaaat 111  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  1971018 actaataacttatgataaattctataatcatctcctttcctcttcatcttccaacttcatacctaaaacaaaaaat 1971093  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 46673696 - 46673749
Alignment:
Q  33 tggactaataacttatgataaattctataatcatcttcttccctcttcatcttc 86  Q
    |||||| | ||| |||||||| || ||| |||||||||||||||||||||||||    
T  46673696 tggactcacaacatatgataacttttattatcatcttcttccctcttcatcttc 46673749  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 1973506 - 1973538
Alignment:
Q  171 aaaccaatgaacttcatcaacaaacaaaacagt 203  Q
    ||||| |||||||||||||||||||||||||||    
T  1973506 aaacctatgaacttcatcaacaaacaaaacagt 1973538  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 48671303 - 48671343
Alignment:
Q  46 tatgataaattctataatcatcttcttccctcttcatcttc 86  Q
    |||||||| |||||| ||| |||||||||||||||||||||    
T  48671303 tatgataacttctattatcgtcttcttccctcttcatcttc 48671343  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 42028567 - 42028515
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcatacccaaaacaaaaaataata 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  42028567 tcatcttcttccctcttcatcatccaacttcatacccaaaacaaaaaacaata 42028515  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 18342984 - 18343027
Alignment:
Q  65 atcttcttccctcttcatcttccaacttcatacccaaaacaaaa 108  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  18342984 atctttttctctcttcatcttccaacttcatacccaaaacaaaa 18343027  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 34039496 - 34039529
Alignment:
Q  82 tcttccaacttcatacccaaaacaaaaaataata 115  Q
    ||||||||||||||||||||||||||||| ||||    
T  34039496 tcttccaacttcatacccaaaacaaaaaacaata 34039529  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 9101615 - 9101659
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcatacccaaaacaaa 107  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  9101615 tcatcttcttccctcatcatctcccaacttcatacccaaaacaaa 9101659  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 15446501 - 15446454
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcatacccaaaacaaaaaa 110  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  15446501 tcatcttcttccctcttcatctcccaacttcctacccaaaaaaaaaaa 15446454  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 6709955 - 6709997
Alignment:
Q  63 tcatcttcttccctcttcatcttccaacttcatacccaaaaca 105  Q
    |||||||||||||||||||||| |||||||||| |||| ||||    
T  6709955 tcatcttcttccctcttcatctcccaacttcatccccataaca 6709997  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 43285268 - 43285300
Alignment:
Q  171 aaaccaatgaacttcatcaacaaacaaaacagt 203  Q
    ||||| |||||||||||||||||||||||||||    
T  43285268 aaacctatgaacttcatcaacaaacaaaacagt 43285300  T

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