View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_11 (Length: 593)
Name: NF7550_low_11
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 32461350 - 32460787
Alignment:
| Q |
18 |
caaggtgctcattggatgtctctatatattttacactgtcagtgcatcttctattttctcaaaataactaaatgcatgttgtgttgtaagtttgaaaaga |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32461350 |
caagatgctcattggatgtctctatatattttacactgtcagtgcatcttctattttctcaaaataactaaatgcatgttgtgttgtaagtttgagaaga |
32461251 |
T |
|
| Q |
118 |
aacctggataatagatacatgagggaactttgccatgaaagcaacaaagttatcctttcccaacggagcgccaccacaagccacagtttttaacgatgac |
217 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
32461250 |
aacctggataatagatgcatgagggaactttgccatgaaagcaacaaagttatcctttcccaacggagcacctccacaagccacagtttttaacgatgac |
32461151 |
T |
|
| Q |
218 |
aaatcatacccatccgtcactccctctttactgatcgccaccaccacgggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461150 |
aaatcatacccatccgtcactccctctttactcatcgccaccaccacgggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaaca |
32461051 |
T |
|
| Q |
318 |
ttttccccaattcaaacctctccatcatcaccaccgtttccatcatagccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgt |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461050 |
ttttccccaattcaaacctctccatcatcaccaccgtttccatcatagccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgt |
32460951 |
T |
|
| Q |
418 |
taacaaacacaccgcaggactcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgat |
517 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32460950 |
taacaaacacaccgcaggattcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgat |
32460851 |
T |
|
| Q |
518 |
ttccctgtggttcctgatattagagatataaaagttagttatattcatttcacttttctatatt |
581 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
32460850 |
ttccctgtggttcctgatattagagatataaaagctagttatattcatttcacttttctatatt |
32460787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 24089858 - 24089892
Alignment:
| Q |
44 |
tattttacactgtcagtgcatcttctattttctca |
78 |
Q |
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| T |
24089858 |
tattttacattgtcagtgcatcttctattttctca |
24089892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 3736577 - 3736549
Alignment:
| Q |
47 |
tttacactgtcagtgcatcttctattttc |
75 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3736577 |
tttacactgtcagtgcatcttctattttc |
3736549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 19905037 - 19905066
Alignment:
| Q |
44 |
tattttacactgtcagtgcatcttctattt |
73 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19905037 |
tattttacactgtcagtgcatcttctattt |
19905066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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