View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_16 (Length: 530)
Name: NF7550_low_16
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 22 - 515
Target Start/End: Complemental strand, 48901053 - 48900559
Alignment:
| Q |
22 |
aagaaactataaacaattccataatatatttttatgaagattttttaggaaaaaataaaacgaggccccatggaacaatttaaatagaacctggactatt |
121 |
Q |
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| T |
48901053 |
aagaaactataaacaattccatactatatttttatgaagattttttaggaaaaaataaaacgaggccccatggaacaatttaaatagaacctggactatt |
48900954 |
T |
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| Q |
122 |
tattacattgttgatatgaagctcgtgacaagggccctagcctctaaatgaacatcaaaggatccctgtcactttcatgtgttctagcatacatatgatt |
221 |
Q |
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| T |
48900953 |
tattacattgttgatatgaagctcgtgacaagggccctagcctctaaatgaacatcaaaggatccctgtcactttcatgtgttctagcatacatatgatt |
48900854 |
T |
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| Q |
222 |
ttctagaatatacatgtcttttgttttgcatatactctataaaaatgttgttttattacacgttctgtcgcatgcagtttgatttttccctgccaaggtt |
321 |
Q |
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| T |
48900853 |
ttctagaatatacatgtcttttgttttgcatatactctataaaaatgttgttttattacacgttctgtcgcttgcagtttgatttttccctgccaaggtt |
48900754 |
T |
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| Q |
322 |
ggtgatcagtttaaaacataaattgtttctgccacccatgaatctgtggctagctacattttaattcctctatgttttctagaatgaatcatttccaact |
421 |
Q |
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| T |
48900753 |
ggtgatcagtttaaaacataaattgtttctgccacccatgaatctgtggctagctacattttaattcctctatgttttctagaatgaatcatttccaact |
48900654 |
T |
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| Q |
422 |
tttagttaatagtcatttgtgaatacaactc--agaacnnnnnnngtagagattaaaaacaaaattcatgctctgacaaatgacagaagttgatgt |
515 |
Q |
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| T |
48900653 |
tttagttaatagtcatttgtgaatacaactcaaagaac-ttttttgtagagattaaaaacaaaactcatgctctgacaaatgacagaagttgatgt |
48900559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 48894452 - 48894406
Alignment:
| Q |
297 |
agtttgatttttccctgccaaggttggtgatcagtttaaaacataaa |
343 |
Q |
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||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
48894452 |
agtttgattcttgcctgccaaggttagtgatcagtttaaaacataaa |
48894406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 48888059 - 48888015
Alignment:
| Q |
297 |
agtttgatttttccctgccaaggttggtgatcagtttaaaacata |
341 |
Q |
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| T |
48888059 |
agtttgattttttcctgctgaggttggtgatcagtttaaaacata |
48888015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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