View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_2 (Length: 832)

Name: NF7550_low_2
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_2
NF7550_low_2
[»] chr8 (15 HSPs)
chr8 (15-546)||(31560878-31561409)
chr8 (327-623)||(31877211-31877503)
chr8 (483-625)||(31547742-31547884)
chr8 (327-627)||(31559304-31559594)
chr8 (50-301)||(31558936-31559181)
chr8 (106-329)||(31877529-31877754)
chr8 (551-627)||(31544656-31544732)
chr8 (510-625)||(31556471-31556586)
chr8 (143-303)||(31556020-31556173)
chr8 (45-150)||(31555903-31556000)
chr8 (202-261)||(31852320-31852379)
chr8 (336-414)||(31556306-31556384)
chr8 (266-331)||(31559210-31559280)
chr8 (632-696)||(31877117-31877181)
chr8 (776-814)||(31557128-31557166)
[»] chr7 (2 HSPs)
chr7 (549-627)||(30034433-30034511)
chr7 (551-624)||(45868101-45868174)
[»] chr1 (2 HSPs)
chr1 (542-624)||(38624993-38625075)
chr1 (550-625)||(46613935-46614010)
[»] chr5 (3 HSPs)
chr5 (550-627)||(32361824-32361901)
chr5 (550-627)||(32379055-32379132)
chr5 (548-624)||(40640266-40640342)
[»] chr4 (3 HSPs)
chr4 (550-626)||(38507765-38507841)
chr4 (551-627)||(55290062-55290138)
chr4 (548-623)||(30161974-30162049)
[»] chr2 (6 HSPs)
chr2 (551-635)||(6493518-6493602)
chr2 (551-627)||(8328450-8328526)
chr2 (549-623)||(18229430-18229504)
chr2 (551-623)||(9596926-9596998)
chr2 (551-623)||(33994623-33994695)
chr2 (551-623)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (551-623)||(32053543-32053615)
chr3 (548-623)||(50683112-50683187)


Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 546
Target Start/End: Original strand, 31560878 - 31561409
Alignment:
Q  15 tataaagtactatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31560878 tataaagtactatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc 31560977  T
Q  115 aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggatttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31560978 aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctccgtcattactggatttt 31561076  T
Q  215 ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561077 ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac 31561176  T
Q  315 atat-ctctagactttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttatt 413  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561177 atattctctagactttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaatttgatcaattcactcactgatatatgttgttatt 31561276  T
Q  414 ccaacagttaagagcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattca 513  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31561277 ccaacagttaagagcttctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaattctca 31561376  T
Q  514 cgaaagcaattaataagcagcacaaaactatca 546  Q
    | ||||| |||| ||| |||||| |||||||||    
T  31561377 caaaagccattactaaacagcaccaaactatca 31561409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 327 - 623
Target Start/End: Complemental strand, 31877503 - 31877211
Alignment:
Q  327 tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga 426  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  31877503 tttgtggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcacg----gatatatgttgttattccaacagttaaga 31877408  T
Q  427 gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaa 526  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| ||||     
T  31877407 gcttctgtatgaaaaactctcaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaagtctcacaaaagccattac 31877308  T
Q  527 taagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877307 taaacagcaccaaactatcatcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31877211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 483 - 625
Target Start/End: Original strand, 31547742 - 31547884
Alignment:
Q  483 ctagaaaattgtaaaagtattctaaaattcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagac 582  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31547742 ctagaaaattgtaaaagtattctaaaattcacaaaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggagagcgtcagac 31547841  T
Q  583 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 625  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31547842 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 31547884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 327 - 627
Target Start/End: Original strand, 31559304 - 31559594
Alignment:
Q  327 tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga 426  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||    |||||||||||||||||||||||||||||    
T  31559304 tttgtggattcatccaccttggcttagaggatgtaattggtctcaaggttaatttgatcagttcact----gatatatgttgttattccaacagttaaga 31559399  T
Q  427 gcttctgtatgaaaaactctgaccatatttttcatatgcttccccatcatttcaatctagaaaattgtaaaagtattctaaaattcacgaaagcaattaa 526  Q
    ||||||  | |  |||||||||||  |||| ||||||| | |||||||||||| | |||| |||      || |||||||   |||| |||||||||||     
T  31559400 gcttctacaagcgaaactctgacctgatttctcatatggtcccccatcatttccaactaggaaa------aattattctagttttcaggaaagcaattac 31559493  T
Q  527 taagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 626  Q
     |||||||||  ||  |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559494 gaagcagcactgaataatcgttatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 31559593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 31558936 - 31559181
Alignment:
Q  50 gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaa 149  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||||||| |||||||| |||||||||||||    
T  31558936 gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaa 31559035  T
Q  150 tcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagttacagccct 249  Q
    | ||| |||| ||||||||||||||||||     ||||| |||||| || |||||||||||||||||| |||  ||||| | ||||||||||||||||||    
T  31559036 ttggccttctattcttgaattatatttgt-----cttta-tttttccccatcattactggattttggctgtgcaaattattaaatatcagttacagccct 31559129  T
Q  250 ccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaa 301  Q
    |||||| ||||| ||||||||||||| | ||||||| ||| ||||| |||||    
T  31559130 ccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa 31559181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 106 - 329
Target Start/End: Complemental strand, 31877754 - 31877529
Alignment:
Q  106 acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcatta 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||        ||||| || ||||||    
T  31877754 acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-------ttttccccatcatta 31877662  T
Q  206 ctggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt 297  Q
     |||||||||||||||  ||||| ||| |||||||        ||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  31877661 atggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgt 31877562  T
Q  298 acaacttgaacaatcacata-tctctagacttt 329  Q
    |||||||| ||||||||||| ||||||||||||    
T  31877561 acaacttggacaatcacatattctctagacttt 31877529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 551 - 627
Target Start/End: Original strand, 31544656 - 31544732
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 31544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 510 - 625
Target Start/End: Original strand, 31556471 - 31556586
Alignment:
Q  510 ttcacgaaagcaattaataagcagcacaaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgat 609  Q
    |||||||| |||||||  || |||||||||   |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  31556471 ttcacgaatgcaattacaaatcagcacaaagtaatcatcatgcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgat 31556570  T
Q  610 ccacgctcaccgcatt 625  Q
    ||||||||||||||||    
T  31556571 ccacgctcaccgcatt 31556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 143 - 303
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
Q  143 aattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagtta 242  Q
    |||||||| ||| |||| |||||||||||||||||||     ||||||||| |  | ||||||||||||||||||||||  ||||| ||| |||||||||    
T  31556020 aattgaattggcattctattcttgaattatatttgtc-----tttatttttcc--catcattactggattttggcagtgcaaattaatcagtatcagtta 31556112  T
Q  243 cagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaact 303  Q
    ||||||||||||  ||||| ||||||||||||| | ||||||  ||| |||||||||||||    
T  31556113 cagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact 31556173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 31555903 - 31556000
Alignment:
Q  45 aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataa 144  Q
    |||||||||||||||||| | ||||| ||||||||||||| |||||||||| |||||| |||||||       |||||||||||||||||  ||||||||    
T  31555903 aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatt-------ttatgtcaattgtatctttgtagataa 31555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 31852320 - 31852379
Alignment:
Q  202 attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac 261  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||    
T  31852320 attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac 31852379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 31556306 - 31556384
Alignment:
Q  336 tcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattc 414  Q
    |||||||| |||||||||||||||||||  ||||||| || ||||||||||| || || ||||||||||| ||| ||||    
T  31556306 tcatccactttggcttggaggatgtaattggtctcaatgttaatttgatcaagtcgctgactgatatatgatgtaattc 31556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 31559210 - 31559280
Alignment:
Q  266 ttcactgtcgagaatctatcttcaacctatg----tacaacttgaacaatcacata-tctctagactttgc 331  Q
    |||||||||| | ||||||||||||||||||    ||||||||| ||||||||||| ||||||||||||||    
T  31559210 ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctctagactttgc 31559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 696
Target Start/End: Complemental strand, 31877181 - 31877117
Alignment:
Q  632 tttttaattaaaaaacctgtatatatggaataataattgcttatgcattgccaataaatttggtt 696  Q
    |||||||||| |||| |||||||||||| ||||||||| | ||||||||| |  |||||||||||    
T  31877181 tttttaattataaaagctgtatatatggtataataattacatatgcattgactttaaatttggtt 31877117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 31557128 - 31557166
Alignment:
Q  776 atcggtacttgaaaaattgtcttaaacttcaatgattac 814  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  31557128 atcggtacttgaaaattcgtcttaaacttcaatgattac 31557166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 30034511 - 30034433
Alignment:
Q  549 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034511 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 30034433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 551 - 624
Target Start/End: Complemental strand, 45868174 - 45868101
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 45868101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 542 - 624
Target Start/End: Complemental strand, 38625075 - 38624993
Alignment:
Q  542 tatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 624  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625075 tatcaacaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 38624993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 550 - 625
Target Start/End: Original strand, 46613935 - 46614010
Alignment:
Q  550 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 46614010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 550 - 627
Target Start/End: Complemental strand, 32361901 - 32361824
Alignment:
Q  550 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32361824  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 550 - 627
Target Start/End: Complemental strand, 32379132 - 32379055
Alignment:
Q  550 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 32379055  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 40640342 - 40640266
Alignment:
Q  548 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640342 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 40640266  T

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Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 550 - 626
Target Start/End: Complemental strand, 38507841 - 38507765
Alignment:
Q  550 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507841 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 38507765  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 551 - 627
Target Start/End: Complemental strand, 55290138 - 55290062
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 55290062  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 548 - 623
Target Start/End: Original strand, 30161974 - 30162049
Alignment:
Q  548 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161974 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

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Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 551 - 635
Target Start/End: Original strand, 6493518 - 6493602
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttactatttt 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttaacaatttt 6493602  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 551 - 627
Target Start/End: Complemental strand, 8328526 - 8328450
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 8328450  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 549 - 623
Target Start/End: Original strand, 18229430 - 18229504
Alignment:
Q  549 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229430 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 551 - 623
Target Start/End: Original strand, 9596926 - 9596998
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 551 - 623
Target Start/End: Complemental strand, 33994695 - 33994623
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 623
Target Start/End: Complemental strand, 21281623 - 21281552
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

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Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 551 - 623
Target Start/End: Complemental strand, 32053615 - 32053543
Alignment:
Q  551 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 50683187 - 50683112
Alignment:
Q  548 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 623  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683187 caagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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