View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_20 (Length: 491)
Name: NF7550_low_20
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 15054822 - 15055090
Alignment:
| Q |
22 |
tagccaacattagataatgtactacttcatttgggttggggcattagtgtatatgtgaatataataactatagaagacacaatctgttagaaaagattat |
121 |
Q |
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| T |
15054822 |
tagccaacattagataatgtactacttcatttgggttggggcattagtgtatatgtgaatataataactatagaagacacaatctgttagaaaagattat |
15054921 |
T |
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| Q |
122 |
tagaacagtcaggacaacagttagtccagtaggtcgttagaaggaaccatccagataaattgggagattgaaacagagggatgcattctccatttattgt |
221 |
Q |
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| T |
15054922 |
tagaacagtcaggacaacagttagtccagtaggtcgttagaaggaaccatccag--aaattgggagattgaaacagagggatgcattctccatttattgt |
15055019 |
T |
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| Q |
222 |
taattttcactgagacatttctattctttcatcttaaaatgagggctttaggccgaacttcagaagtaccggtaaataaggtagattaattg |
313 |
Q |
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| T |
15055020 |
taattttcactgagac---------------------aatgagggctttaggccgaacttcagaagtaccggtaaataaggtagattaattg |
15055090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 311 - 485
Target Start/End: Original strand, 15055128 - 15055302
Alignment:
| Q |
311 |
ttggagttaaatggtctatcatttgaaatgatttatcttaagagtgttgttgattgaatcatgagtcgctctaaggctttgactcttgttgttgagcttg |
410 |
Q |
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| T |
15055128 |
ttggagttaaatggtctatcatttgaaatgatttatcttaagagtgttgttgattgaatcaagagtcgctctaaggctttgactcttgttgttgagcttg |
15055227 |
T |
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| Q |
411 |
tatcttgtcggtgtttctgtgtgttatgcatgaagtaaacttcttcggatcttaatagcaccgagcaacaccaaa |
485 |
Q |
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| T |
15055228 |
tatcttgtcggtgtttctgtgtgttatgcatgaagtaaacttcttcggatcttaatagcaccgagcaacaccaaa |
15055302 |
T |
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