View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_23 (Length: 484)

Name: NF7550_low_23
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_23
NF7550_low_23
[»] chr1 (20 HSPs)
chr1 (19-352)||(8401127-8401470)
chr1 (304-350)||(50351911-50351957)
chr1 (305-350)||(18618943-18618988)
chr1 (305-350)||(23817418-23817463)
chr1 (305-350)||(24636034-24636079)
chr1 (305-350)||(48762244-48762289)
chr1 (305-350)||(49936850-49936895)
chr1 (305-348)||(6314226-6314269)
chr1 (305-352)||(19897673-19897720)
chr1 (307-350)||(23174425-23174468)
chr1 (305-350)||(4097130-4097175)
chr1 (305-350)||(16976063-16976108)
chr1 (305-350)||(21641615-21641660)
chr1 (305-350)||(25888941-25888986)
chr1 (305-350)||(43452650-43452695)
chr1 (305-349)||(180832-180876)
chr1 (308-352)||(34370493-34370537)
chr1 (308-350)||(20434638-20434680)
chr1 (305-350)||(11422548-11422593)
chr1 (305-350)||(23920992-23921037)
[»] chr8 (16 HSPs)
chr8 (305-348)||(15227140-15227183)
chr8 (305-350)||(1209764-1209809)
chr8 (305-350)||(4835539-4835584)
chr8 (305-350)||(4840984-4841029)
chr8 (305-350)||(39657729-39657774)
chr8 (305-350)||(41099290-41099335)
chr8 (305-352)||(1149936-1149983)
chr8 (305-352)||(41451211-41451258)
chr8 (305-350)||(2751213-2751258)
chr8 (305-350)||(34633234-34633279)
chr8 (308-348)||(30414024-30414064)
chr8 (305-350)||(10237462-10237507)
chr8 (305-350)||(19784379-19784424)
chr8 (320-350)||(7857788-7857818)
chr8 (308-349)||(7059144-7059185)
chr8 (314-350)||(43690748-43690784)
[»] chr7 (14 HSPs)
chr7 (305-352)||(48692026-48692073)
chr7 (305-350)||(41911025-41911070)
chr7 (305-350)||(46358628-46358673)
chr7 (305-350)||(47340255-47340300)
chr7 (305-348)||(35737058-35737101)
chr7 (305-350)||(763805-763850)
chr7 (305-350)||(16933156-16933201)
chr7 (305-350)||(16938539-16938584)
chr7 (305-350)||(30884135-30884180)
chr7 (305-350)||(31660177-31660222)
chr7 (305-350)||(46572595-46572640)
chr7 (305-350)||(15973881-15973926)
chr7 (305-350)||(32685865-32685910)
chr7 (307-351)||(48306330-48306373)
[»] chr3 (18 HSPs)
chr3 (305-352)||(54379268-54379315)
chr3 (305-350)||(6097597-6097642)
chr3 (305-350)||(9595893-9595938)
chr3 (305-350)||(30947824-30947869)
chr3 (305-350)||(50755170-50755215)
chr3 (307-351)||(31853163-31853207)
chr3 (305-348)||(3475320-3475363)
chr3 (305-348)||(19284781-19284824)
chr3 (307-350)||(19384404-19384447)
chr3 (304-350)||(47335140-47335186)
chr3 (305-350)||(2941839-2941884)
chr3 (305-350)||(9106375-9106420)
chr3 (305-350)||(26662451-26662496)
chr3 (306-350)||(33413927-33413971)
chr3 (305-348)||(10986462-10986505)
chr3 (308-350)||(26960734-26960776)
chr3 (305-350)||(51361544-51361589)
chr3 (305-343)||(46237671-46237709)
[»] chr2 (12 HSPs)
chr2 (305-352)||(7487167-7487214)
chr2 (307-349)||(18762946-18762988)
chr2 (305-350)||(18297189-18297234)
chr2 (305-350)||(39355143-39355188)
chr2 (305-350)||(1292092-1292137)
chr2 (305-350)||(8149939-8149984)
chr2 (305-350)||(8154563-8154608)
chr2 (305-350)||(34464819-34464864)
chr2 (307-350)||(15016481-15016524)
chr2 (309-350)||(2264632-2264673)
chr2 (305-350)||(25193969-25194014)
chr2 (315-351)||(4578590-4578626)
[»] scaffold0074 (1 HSPs)
scaffold0074 (305-350)||(24382-24427)
[»] chr6 (9 HSPs)
chr6 (305-350)||(6900911-6900956)
chr6 (305-350)||(15493282-15493327)
chr6 (305-352)||(34869976-34870023)
chr6 (305-350)||(1449650-1449695)
chr6 (305-350)||(7089190-7089235)
chr6 (305-352)||(33345357-33345403)
chr6 (305-343)||(35121503-35121541)
chr6 (305-350)||(878368-878413)
chr6 (310-350)||(1536814-1536854)
[»] chr5 (10 HSPs)
chr5 (305-350)||(14394576-14394621)
chr5 (305-350)||(14940269-14940314)
chr5 (305-350)||(26637750-26637795)
chr5 (305-352)||(3883948-3883995)
chr5 (305-350)||(37456788-37456833)
chr5 (305-349)||(15416773-15416817)
chr5 (305-350)||(30783566-30783610)
chr5 (305-349)||(28069268-28069312)
chr5 (305-348)||(34330166-34330209)
chr5 (305-351)||(13553090-13553136)
[»] chr4 (21 HSPs)
chr4 (305-350)||(638972-639017)
chr4 (305-350)||(11786082-11786127)
chr4 (305-350)||(11798249-11798294)
chr4 (305-350)||(13635638-13635683)
chr4 (305-350)||(30597807-30597852)
chr4 (305-350)||(35291461-35291506)
chr4 (305-350)||(45256873-45256918)
chr4 (305-350)||(49425970-49426015)
chr4 (305-350)||(51921178-51921223)
chr4 (305-349)||(49492425-49492469)
chr4 (305-350)||(15051049-15051094)
chr4 (305-350)||(27865650-27865695)
chr4 (305-346)||(50644652-50644693)
chr4 (308-350)||(51836351-51836393)
chr4 (305-350)||(10473626-10473671)
chr4 (305-350)||(26577282-26577327)
chr4 (305-350)||(53441428-53441473)
chr4 (314-350)||(1621984-1622020)
chr4 (306-350)||(36011951-36011995)
chr4 (307-350)||(46672546-46672589)
chr4 (305-343)||(55765596-55765634)
[»] scaffold0045 (1 HSPs)
scaffold0045 (308-350)||(33792-33834)
[»] scaffold0581 (1 HSPs)
scaffold0581 (305-350)||(8334-8379)
[»] scaffold0571 (1 HSPs)
scaffold0571 (305-350)||(566-611)
[»] scaffold0338 (1 HSPs)
scaffold0338 (305-350)||(6491-6536)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 8401127 - 8401470
Alignment:
Q  19 taaaagacttggttttcatttgtcacataactatgtggttaatttggaaggggaaaaaacgactttatgttctcctggtttcgatgattgaagaggtgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8401127 taaaagacttggttttcatttgtcacataactatgtggttaatttcgaacgg-aaaaaacgactttatgttctcctggtttcgatgattgaagagctgat 8401225  T
Q  119 agaacaagtgaaatctttgtcttcaaaatggtttttagcaaaaaagagtgtgacactcttgtttattcaactaatattttacaaatccatgggtaatttt 218  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401226 agaacaagtgaaatctttgtcgtcaaaatggtttttagctaaaaagagtgtgacactcttgtttattcaactaatattttacaaatccatgggtaatttt 8401325  T
Q  219 agctccataggatgcggaggacat-----------tttttggtgggtcgaattttatgagaaacaaaaatatatagcataatgtttctgggagcagttcc 307  Q
    ||||||||||||||||||||||||           ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  8401326 agctccataggatgcggaggacattttttggtgtatttttggtgggtcaaattttatgagaaaaaaatatatatagcataatgtttctgggagcggttcc 8401425  T
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||    
T  8401426 ttatgtaccgtgcataaatcccaacataattgtttcctacacctc 8401470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 50351957 - 50351911
Alignment:
Q  304 ttccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  50351957 ttccttatgcaccgtgcataaatcccaacataattgcttcctacacc 50351911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 18618988 - 18618943
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  18618988 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 18618943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 23817463 - 23817418
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  23817463 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 23817418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 24636079 - 24636034
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  24636079 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 24636034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 48762244 - 48762289
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  48762244 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 48762289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 49936850 - 49936895
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  49936850 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 49936895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 6314269 - 6314226
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  6314269 tccttatgcaccgtatataaatcccaacataattgcttcctaca 6314226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 19897673 - 19897720
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||    
T  19897673 tccttatgcaccgtgcagaaatcccaacataattgcttcctacacctc 19897720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 23174425 - 23174468
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  23174425 cttatgcaccgtgcataaatcccaacataattgcttcctacacc 23174468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 4097130 - 4097175
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  4097130 tccttatgcaccgtgcttaaatcccaacataattgcttcctacacc 4097175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 16976108 - 16976063
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  16976108 tccttatgcaccgtgcataaatcctaacataattgcttcctacacc 16976063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 21641615 - 21641660
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  21641615 tccttatgcaccgtgcacaaatcccaacataattgcttcctacacc 21641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 25888941 - 25888986
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  25888941 tccttatgcaccgtgcataaatcctaacataattgcttcctacacc 25888986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 43452695 - 43452650
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  43452695 tccttatgcaccgtgcataaatcccaacataattgtttcctacacc 43452650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 180876 - 180832
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  180876 tccttatgcaccgtgtataaatcccaacataattgcttcctacac 180832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 34370537 - 34370493
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  34370537 ttatgcaccgtgcataaatcctaacataattgcttcctacacctc 34370493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 20434638 - 20434680
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  20434638 ttatgcaccatgcataaatcccaacataattgcttcctacacc 20434680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 11422593 - 11422548
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||    
T  11422593 tccttatgcatcgtgcataaattccaacataattgcttcctacacc 11422548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 23920992 - 23921037
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||    
T  23920992 tccttatgcatcgtgcataaatcccaacataattgtttcctacacc 23921037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 15227183 - 15227140
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15227183 tccttatgcaccgtacataaatcccaacataattgcttcctaca 15227140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 1209809 - 1209764
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  1209809 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 1209764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 4835539 - 4835584
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4835539 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 4835584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 4840984 - 4841029
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4840984 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 4841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 39657729 - 39657774
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  39657729 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 39657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 41099335 - 41099290
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  41099335 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 41099290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 1149936 - 1149983
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  1149936 tccttatgcaccgtgcataaattccaacataattgcttcctacacctc 1149983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 41451258 - 41451211
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  41451258 tccttatgcactgtgcataaatcccaacataattgcttcctacacctc 41451211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 2751258 - 2751213
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  2751258 tccttatgcaccgtgcatgaatcccaacataattgcttcctacacc 2751213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 34633234 - 34633279
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  34633234 tccttatgcaccgtgcataaatcccaacataattgcttcttacacc 34633279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 30414064 - 30414024
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  30414064 ttatgcaccgtgcataaatcccaacataattgcttcctaca 30414024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 10237507 - 10237462
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||    
T  10237507 tccttatgcaccgtgtataaatcccaacataattgctttctacacc 10237462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 19784424 - 19784379
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||  || |||||||||||||||||||||||||||||||    
T  19784424 tccttatgcattgtgcataaatcccaacataattgcttcctacacc 19784379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 7857818 - 7857788
Alignment:
Q  320 cataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||||||||||||||||||||    
T  7857818 cataaatcccaacataattgcttcctacacc 7857788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 7059185 - 7059144
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    ||||||||||| ||||||| |||||||||||| |||||||||    
T  7059185 ttatgcaccgtgcataaattccaacataattgtttcctacac 7059144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 43690784 - 43690748
Alignment:
Q  314 accgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  43690784 accgtgcataaatcccaacataattgctttctacacc 43690748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 48692073 - 48692026
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  48692073 tccttatgcaccgtgcataaatcccaacataattgcttcctacacctc 48692026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 41911025 - 41911070
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  41911025 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 41911070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 46358673 - 46358628
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  46358673 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 46358628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 47340300 - 47340255
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  47340300 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 47340255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 35737101 - 35737058
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  35737101 tccttatgcaccgtgcataaatcccaacataattgcttcctaca 35737058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 763850 - 763805
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  763850 tccttatgcactgtgcataaatcccaacataattgcttcctacacc 763805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 16933156 - 16933201
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  16933156 tccttatgcaccgtgcataaatctcaacataattgcttcctacacc 16933201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 16938539 - 16938584
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  16938539 tccttatgcaccgtgcataaatctcaacataattgcttcctacacc 16938584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 30884135 - 30884180
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  30884135 tccttatgcaccgtgcataaatcctaacataattgcttcctacacc 30884180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 31660222 - 31660177
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  31660222 tccttatgcaccgtgcataaatctcaacataattgcttcctacacc 31660177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 46572595 - 46572640
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  46572595 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 46572640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 15973881 - 15973926
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||    
T  15973881 tccttatgcaccatgcataaatcccaacatagttgcttcctacacc 15973926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 32685865 - 32685910
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||||    
T  32685865 tccttatacaccgtgcataaatctcaacataattgcttcctacacc 32685910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 48306373 - 48306330
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacct 351  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  48306373 cttatgcaccgtgcataaatcccaacataatt-cttcctacacct 48306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 54379315 - 54379268
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  54379315 tccttatgcaccgtgcataaatcccaacataattgcttcctacacctc 54379268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 6097597 - 6097642
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  6097597 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 6097642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 9595893 - 9595938
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  9595893 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 9595938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 30947824 - 30947869
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  30947824 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 30947869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 50755215 - 50755170
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  50755215 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 50755170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 31853207 - 31853163
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacct 351  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  31853207 cttatgcaccgtgcataaatcccaacataattgcttcctacacct 31853163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 3475320 - 3475363
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  3475320 tccttatgcaccgtgcataaatcccaacataattgcttcctaca 3475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 19284824 - 19284781
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  19284824 tccttatgcaccgtgcataaatcccaacataattgcttcctaca 19284781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 19384404 - 19384447
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  19384404 cttatgcaccgtgcataaatcccaacataattgcttcctacacc 19384447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 47335186 - 47335140
Alignment:
Q  304 ttccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  47335186 ttccttatgcaccgtgcataaatcccaacataattgtttcctacacc 47335140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 2941839 - 2941884
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  2941839 tccttatgcaccgtgcataaatcccaacataattgctttctacacc 2941884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 9106420 - 9106375
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  9106420 tccttatgcaccgtgcataaatcccaatataattgcttcctacacc 9106375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 26662451 - 26662496
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  26662451 tccttatgcactgtgcataaatcccaacataattgcttcctacacc 26662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 33413927 - 33413971
Alignment:
Q  306 ccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  33413927 ccttatgcaccgtgcataaatcccaatataattgcttcctacacc 33413971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 10986505 - 10986462
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  10986505 tccttatgcaccgtgcataaatctcaacataattgcttcctaca 10986462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 26960776 - 26960734
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  26960776 ttatgcaccgtgcataaatcccaatataattgcttcctacacc 26960734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 51361544 - 51361589
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||    
T  51361544 tccttatgcaccgtgtataaatcctaacataattgcttcctacacc 51361589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 46237671 - 46237709
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttc 343  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  46237671 tccttatacaccgtgcataaatcccaacataattgcttc 46237709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 7487167 - 7487214
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7487167 tccttatgcaccgtgcataaatcccaacataattgcttcctacacctc 7487214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 18762988 - 18762946
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18762988 cttatgcaccgtacataaatcccaacataattgcttcctacac 18762946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 18297189 - 18297234
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  18297189 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 18297234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 39355188 - 39355143
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  39355188 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 39355143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 1292092 - 1292137
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  1292092 tccttatgcaccgtgcataaattccaacataattgcttcctacacc 1292137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 8149984 - 8149939
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  8149984 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 8149939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 8154608 - 8154563
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  8154608 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 8154563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 34464864 - 34464819
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34464864 tccttatgcaccgtgcataaatccaaacataattgcttcctacacc 34464819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 15016481 - 15016524
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  15016481 cttatgcaccgtgcataaatctcaacataattgcttcctacacc 15016524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 2264673 - 2264632
Alignment:
Q  309 tatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  2264673 tatgcacagtacataaattccaacataattgcttcctacacc 2264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 25194014 - 25193969
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  25194014 tccttatgcaccgtgcataaatcccaatataattgtttcctacacc 25193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 4578590 - 4578626
Alignment:
Q  315 ccgtacataaatcccaacataattgcttcctacacct 351  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4578590 ccgtgcataaatcccaacataattgcttcctacacct 4578626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 24427 - 24382
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  24427 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 24382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 6900956 - 6900911
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  6900956 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 6900911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 15493327 - 15493282
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  15493327 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 15493282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 34869976 - 34870023
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  34869976 tccttatgcaccgtgcataaatcctaacataattgcttcctacacctc 34870023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 1449695 - 1449650
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  1449695 tccttatgcaccgtgcataaatcccaacataattgtttcctacacc 1449650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 7089235 - 7089190
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  7089235 tccttatgtaccgtgcataaatcccaacataattgcttcctacacc 7089190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 33345357 - 33345403
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  33345357 tccttatgcaccgtgcataaatcccaacataattgctt-ctacacctc 33345403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 35121541 - 35121503
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttc 343  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35121541 tccttatgcaccgtgcataaatcccaacataattgcttc 35121503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 878413 - 878368
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  878413 tccttatgtaccgtgcataaatcccaacataattacttcctacacc 878368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1536814 - 1536854
Alignment:
Q  310 atgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  1536814 atgcaccgtgcataaatcccaatataattgcttcctacacc 1536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 14394621 - 14394576
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  14394621 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 14394576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 14940269 - 14940314
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  14940269 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 14940314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 26637750 - 26637795
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  26637750 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 26637795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 3883948 - 3883995
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacctc 352  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  3883948 tccttatgcaccgtgcataaatcccaatataattgcttcctacacctc 3883995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 37456833 - 37456788
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  37456833 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 37456788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 15416817 - 15416773
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||    
T  15416817 tccttatgcaccgtgcataaatcccaacatgattgcttcctacac 15416773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 30783610 - 30783566
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  30783610 tccttatgcaccgtgcataaatcc-aacataattgcttcctacacc 30783566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 28069268 - 28069312
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||    
T  28069268 tccttatgcaccgagcataaattccaacataattgcttcctacac 28069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 34330209 - 34330166
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctaca 348  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  34330209 tccttatgcaccgtgcataaattccaacataattgcttcataca 34330166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 13553136 - 13553090
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacct 351  Q
    ||||||||||||||  |||||||| || |||||||||||||||||||    
T  13553136 tccttatgcaccgtgtataaatcctaatataattgcttcctacacct 13553090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 639017 - 638972
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  639017 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 638972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 11786127 - 11786082
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  11786127 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 11786082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 11798294 - 11798249
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  11798294 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 11798249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 13635638 - 13635683
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  13635638 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 13635683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 30597852 - 30597807
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  30597852 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 30597807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 35291461 - 35291506
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  35291461 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 35291506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 45256918 - 45256873
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  45256918 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 45256873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 49425970 - 49426015
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  49425970 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 49426015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 51921178 - 51921223
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  51921178 tccttatgcaccgtgcataaatcccaacataattgcttcctacacc 51921223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 49492425 - 49492469
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacac 349  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  49492425 tccttatgcaccgtgcataaatcccaacataattgcttcctacac 49492469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 15051049 - 15051094
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  15051049 tccttatgcaccgtgcataaatcctaacataattgcttcctacacc 15051094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 27865650 - 27865695
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  27865650 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 27865695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 50644693 - 50644652
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttccta 346  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  50644693 tccttatgcaccgtgcataaatcccaacataattgcttccta 50644652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 51836351 - 51836393
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  51836351 ttatgcatcgtgcataaatcccaacataattgcttcctacacc 51836393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 10473671 - 10473626
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||    
T  10473671 tccttatgcaccgtgcataaattccaacctaattgcttcctacacc 10473626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 26577282 - 26577327
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||    
T  26577282 tccttatgcaccgtgcataaatttcaacataattgcttcctacacc 26577327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 53441473 - 53441428
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  53441473 tccttatgcaccgggcataaattccaacataattgcttcctacacc 53441428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 1622020 - 1621984
Alignment:
Q  314 accgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1622020 accgtgcataaatcccaacataattgcttcctacacc 1621984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 36011995 - 36011951
Alignment:
Q  306 ccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||    
T  36011995 ccttatgcaccgtgtataaatctcaacataattgcttcctacacc 36011951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 46672589 - 46672546
Alignment:
Q  307 cttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||    
T  46672589 cttatgcatcgtgcataaatcccaacatgattgcttcctacacc 46672546  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 55765634 - 55765596
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttc 343  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  55765634 tccttatgcaccgtgcataaatcccaatataattgcttc 55765596  T

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Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 33834 - 33792
Alignment:
Q  308 ttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  33834 ttatgcaccgtgcataaatcccaacataattgcttcctacacc 33792  T

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Target: scaffold0581 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 8334 - 8379
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  8334 tccttatgcaccgtgcataaatcccaacataattgctttctacacc 8379  T

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Target: scaffold0571 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 566 - 611
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  566 tccttatgcaccgtgcataaatcccaatataattgcttcctacacc 611  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 6536 - 6491
Alignment:
Q  305 tccttatgcaccgtacataaatcccaacataattgcttcctacacc 350  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  6536 tccttatgcaccatgcataaatcccaacataattgcttcctacacc 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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