View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_24 (Length: 481)
Name: NF7550_low_24
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 40068964 - 40069408
Alignment:
| Q |
12 |
tattctggcaagtttattaagcaaatatggttaatttctagctttctttcttataatctagttgcaagataactgaattaaattaaatgtctgcatatgt |
111 |
Q |
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| T |
40068964 |
tattctggcaagtttattaagcaaatatggttaatttctagctttctttcttataatctagttgcaagataactgaattaaattaaatgtctgcatatgt |
40069063 |
T |
|
| Q |
112 |
atctaagcaaataatgtatcatatatttgcaggtaaacaatgcagggattaatttcaattttgggtctgataattcagttgaaaatgctcatacggttat |
211 |
Q |
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| T |
40069064 |
atctaagcaaataatgtatcatatatttgcaggtaaacaatgcagggattaatttcaattttgggtctgataattcagttgaaaatgctcatacggttat |
40069163 |
T |
|
| Q |
212 |
tgatacgaattattttggaaccaaacgtatgattgaagctatgattccattaatgaaggcgtccgcggcaggtggtcgtattgtaaatgttagcacgcgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
40069164 |
tgatacgaattattttggaaccaaacgtatgattgaagctatgattccattaatgaaggcgtccgcggctggtggtcgtattgtaaatgtaagcacgcgt |
40069263 |
T |
|
| Q |
312 |
ctaggtcgactaaatggaaaacgaaatgtaagtactatattcacgagtttaatcatgtcatatggtcaatctaaaaagttttataccattagcgtatcat |
411 |
Q |
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| T |
40069264 |
ctaggtcgactaaatggaaaacgaaatgtaagtactatatacaccagtttaatcatgtcacatggtcaatttaaaaagttttatac------cgtatcat |
40069357 |
T |
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| Q |
412 |
aaccaatcatatgtgcaagtgcaactttagaattaactatgattaaattta |
462 |
Q |
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| T |
40069358 |
aaccaatcatatgtgcaaatgcaactttagaattaactatgattaaattta |
40069408 |
T |
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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 345
Target Start/End: Original strand, 10898717 - 10898922
Alignment:
| Q |
140 |
gcaggtaaacaatgcagggattaatttcaattttgggtctgataattcagttgaaaatgctcatacggttattgatacgaattattttggaaccaaacgt |
239 |
Q |
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|||||| |||||||| || ||||||||||| | ||||||||||| || ||||||||||||| | ||||||||| || ||||||| ||| | |||| |
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| T |
10898717 |
gcaggtgaacaatgctggtgttaatttcaatctcgggtctgataactctgttgaaaatgctcgcaaggttattgaaacaaattattatggcatcaaaaag |
10898816 |
T |
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| Q |
240 |
atgattgaagctatgattccattaatgaaggcgtccgcggcaggtggtcgtattgtaaatgttagcacgcgtctaggtcgactaaatggaaaacgaaatg |
339 |
Q |
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| T |
10898817 |
ttgactgaagctcttattccaatgatgaaaccatctgttgttggtgctcgaattgtaaacgtaagctcgcgtctaggtcgattaaatggaagacgaaatg |
10898916 |
T |
|
| Q |
340 |
taagta |
345 |
Q |
| |
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|||||| |
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|
| T |
10898917 |
taagta |
10898922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 44965883 - 44966051
Alignment:
| Q |
177 |
tctgataattcagttgaaaatgctcatacggttattgatacgaattattttggaaccaaacgtatgattgaagctatgattccattaatgaaggcgtccg |
276 |
Q |
| |
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|||||||| |||||||||||||||| || |||||| || ||||||| ||| ||||| | |||||||||||||||||||| || |||||| | || | |
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| T |
44965883 |
tctgataactcagttgaaaatgctcgtaaatgtattgaaacaaattattatgggaccaagagaatgattgaagctatgattcctttgatgaagccatctg |
44965982 |
T |
|
| Q |
277 |
cggcaggtggtcgtattgtaaatgttagcacgcgtctaggtcgactaaatggaaaacgaaatgtaagta |
345 |
Q |
| |
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| || |||||||||||||| ||||| || | ||| | ||||| ||||| || ||||||||||| |||| |
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| T |
44965983 |
ctgccggtggtcgtattgttaatgtgagttcacgtttgggtcgtctaaacggtaaacgaaatgtgagta |
44966051 |
T |
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