View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_25 (Length: 480)
Name: NF7550_low_25
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_25 |
 | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 45895041 - 45895115
Alignment:
| Q |
362 |
ttagtgtgtaaaagaagattttgtagttaattaaaagatatactcttattaattccaatgctgttgtgtatatta |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45895041 |
ttagtgtgtaaaagaagattttgtagttaattaaaagaaatactcttattaattccaatgctgttgtgtatatta |
45895115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 51047960 - 51048063
Alignment:
| Q |
98 |
ctaactattttgtaccaaaaaacttaatttaattatttaagctattcaacattt--nnnnnnnnncaaatcaaatctagaattaatcatttttgtactca |
195 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51047960 |
ctaactattttgtacaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaaaaaacaaatcaaatctagaattaatcatttttgtactca |
51048059 |
T |
|
| Q |
196 |
agga |
199 |
Q |
| |
|
|||| |
|
|
| T |
51048060 |
agga |
51048063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51047862 - 51047899
Alignment:
| Q |
1 |
ggagataagaa-ctaagaaagggaaagatgttcgcttc |
37 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51047862 |
ggagataagaaactaagaaagggaaagatgttcgcttc |
51047899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 1775829 - 1775741
Alignment:
| Q |
98 |
ctaactattttgtaccaaaaaa-cttaatttaattatttaagctattcaacatttnnnnnnnnncaaatcaaatctagaattaatcattttt |
188 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1775829 |
ctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaa---aaatcaaatctagaattaatcattttt |
1775741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 105805 - 105759
Alignment:
| Q |
98 |
ctaactattttgtaccaaaaaa-cttaatttaattatttaagctatt |
143 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
105805 |
ctaattattttgtatcaaaaaaacttaatttaattatttaagctatt |
105759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University