View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_26 (Length: 471)

Name: NF7550_low_26
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_26
NF7550_low_26
[»] chr3 (24 HSPs)
chr3 (131-455)||(26293227-26293567)
chr3 (131-392)||(24150558-24150832)
chr3 (131-394)||(36054731-36055007)
chr3 (131-391)||(35731016-35731289)
chr3 (131-390)||(38629528-38629800)
chr3 (133-394)||(30588925-30589200)
chr3 (133-392)||(50900173-50900445)
chr3 (134-391)||(19551885-19552145)
chr3 (131-373)||(13662632-13662887)
chr3 (131-373)||(46251948-46252203)
chr3 (131-360)||(26555898-26556123)
chr3 (131-331)||(26005770-26005983)
chr3 (131-372)||(27593236-27593490)
chr3 (131-372)||(39338046-39338297)
chr3 (218-394)||(26005579-26005768)
chr3 (131-295)||(52024035-52024199)
chr3 (131-373)||(36786055-36786309)
chr3 (134-295)||(38682513-38682673)
chr3 (131-232)||(53183972-53184073)
chr3 (8-73)||(26293625-26293690)
chr3 (409-455)||(23753930-23753979)
chr3 (150-198)||(33119571-33119619)
chr3 (150-192)||(24574858-24574900)
chr3 (144-240)||(6783992-6784088)
[»] chr7 (14 HSPs)
chr7 (131-394)||(43057405-43057681)
chr7 (131-394)||(30110887-30111163)
chr7 (131-389)||(151942-152213)
chr7 (131-394)||(35089830-35090106)
chr7 (131-394)||(27418366-27418642)
chr7 (131-372)||(39301002-39301245)
chr7 (131-295)||(47914893-47915057)
chr7 (131-373)||(40097178-40097434)
chr7 (294-394)||(47914053-47914153)
chr7 (150-237)||(24939544-24939631)
chr7 (153-277)||(31494345-31494469)
chr7 (409-455)||(152234-152283)
chr7 (409-455)||(43057333-43057382)
chr7 (363-391)||(33474820-33474848)
[»] chr8 (30 HSPs)
chr8 (131-394)||(41386594-41386870)
chr8 (131-394)||(2112875-2113151)
chr8 (131-392)||(43605090-43605364)
chr8 (131-394)||(7148124-7148400)
chr8 (131-391)||(42275056-42275330)
chr8 (131-394)||(29260000-29260276)
chr8 (131-389)||(40265010-40265281)
chr8 (131-390)||(4655131-4655403)
chr8 (134-352)||(10802537-10802768)
chr8 (131-373)||(28619927-28620183)
chr8 (168-392)||(41965526-41965761)
chr8 (131-373)||(4302551-4302808)
chr8 (131-339)||(9457627-9457848)
chr8 (132-352)||(8502717-8502950)
chr8 (131-372)||(30382420-30382674)
chr8 (131-372)||(37567118-37567363)
chr8 (131-295)||(35142126-35142290)
chr8 (131-240)||(1605904-1606013)
chr8 (131-289)||(9209120-9209278)
chr8 (131-243)||(40013360-40013472)
chr8 (312-392)||(41965324-41965404)
chr8 (293-352)||(40013265-40013324)
chr8 (362-394)||(9457841-9457873)
chr8 (409-455)||(29259933-29259982)
chr8 (293-352)||(35142301-35142360)
chr8 (409-455)||(40264939-40264988)
chr8 (293-323)||(9209295-9209325)
chr8 (19-48)||(9082487-9082516)
chr8 (151-240)||(23185801-23185890)
chr8 (19-48)||(32664656-32664685)
[»] chr2 (12 HSPs)
chr2 (131-394)||(29941029-29941305)
chr2 (131-387)||(6289232-6289501)
chr2 (131-394)||(45547015-45547291)
chr2 (131-372)||(11534919-11535173)
chr2 (131-373)||(20157502-20157757)
chr2 (131-373)||(34028677-34028933)
chr2 (138-372)||(24193232-24193479)
chr2 (131-367)||(11998169-11998417)
chr2 (131-352)||(24193633-24193874)
chr2 (131-295)||(45485445-45485599)
chr2 (150-240)||(38822824-38822915)
chr2 (144-240)||(27090732-27090828)
[»] chr6 (9 HSPs)
chr6 (134-395)||(6476436-6476710)
chr6 (131-339)||(29834064-29834285)
chr6 (131-339)||(29865498-29865719)
chr6 (131-365)||(3110038-3110285)
chr6 (131-372)||(10643758-10644014)
chr6 (131-373)||(30877936-30878191)
chr6 (131-295)||(7858210-7858374)
chr6 (362-392)||(29834041-29834071)
chr6 (362-392)||(29865475-29865505)
[»] chr5 (6 HSPs)
chr5 (131-392)||(40410674-40410948)
chr5 (131-372)||(6828537-6828792)
chr5 (131-352)||(17518512-17518747)
chr5 (131-352)||(10571195-10571429)
chr5 (155-277)||(6902525-6902647)
chr5 (409-455)||(40410972-40411021)
[»] chr4 (21 HSPs)
chr4 (131-394)||(8583729-8584005)
chr4 (146-394)||(42218170-42218431)
chr4 (131-352)||(8880528-8880762)
chr4 (131-392)||(3435689-3435957)
chr4 (131-391)||(44929961-44930232)
chr4 (131-372)||(52109490-52109744)
chr4 (131-373)||(25935871-25936127)
chr4 (131-369)||(45332750-45333001)
chr4 (131-369)||(45340440-45340691)
chr4 (131-372)||(40143860-40144098)
chr4 (131-367)||(47685228-47685477)
chr4 (138-369)||(42720810-42721055)
chr4 (131-373)||(26336161-26336407)
chr4 (131-372)||(54509798-54510050)
chr4 (224-392)||(7820239-7820405)
chr4 (153-352)||(33449945-33450157)
chr4 (131-191)||(7820180-7820240)
chr4 (409-455)||(42218102-42218151)
chr4 (150-240)||(5117064-5117154)
chr4 (408-455)||(3435631-3435681)
chr4 (363-391)||(56397742-56397770)
[»] chr1 (16 HSPs)
chr1 (131-455)||(52705477-52705817)
chr1 (131-391)||(26882553-26882826)
chr1 (131-392)||(45318544-45318818)
chr1 (131-373)||(1928149-1928404)
chr1 (131-372)||(36402331-36402585)
chr1 (131-369)||(29208839-29209090)
chr1 (131-372)||(33243060-33243310)
chr1 (131-372)||(33263233-33263483)
chr1 (131-372)||(10896884-10897138)
chr1 (141-234)||(45534900-45534993)
chr1 (131-256)||(9831383-9831499)
chr1 (254-339)||(45534991-45535089)
chr1 (150-277)||(9191234-9191361)
chr1 (263-295)||(9831782-9831814)
chr1 (409-455)||(45318844-45318893)
chr1 (293-330)||(9831825-9831862)
[»] scaffold0016 (1 HSPs)
scaffold0016 (131-394)||(81506-81782)
[»] scaffold0153 (1 HSPs)
scaffold0153 (164-394)||(34538-34781)
[»] scaffold0237 (2 HSPs)
scaffold0237 (131-339)||(21192-21413)
scaffold0237 (362-391)||(21170-21199)
[»] scaffold0202 (1 HSPs)
scaffold0202 (134-373)||(16303-16539)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 131 - 455
Target Start/End: Complemental strand, 26293567 - 26293227
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26293567 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatatttaattgagattttgcataact 26293468  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  26293467 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgtgattgtttagtgtaaaatgtacctactaac 26293368  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcatannnnnnnnnnacttttcttcca 417  Q
    || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |           ||||||||||||    
T  26293367 aacctcacacctaatcttgagacttttctgtctcccacacatagccttgagattttgtaatactcttccaaattctttttttttttttacttttcttcca 26293268  T
Q  418 aattcttttctatt---ctgtaacaatggcaggttatatat 455  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  26293267 aattcttttctattctactgtaacaatggcaggttatatat 26293227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 131 - 392
Target Start/End: Complemental strand, 24150832 - 24150558
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  24150832 aggaatgtaaaacattcttgtggtattcaattaggattttgaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 24150733  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  24150732 taaaaattgtccactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 24150633  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  24150632 aatctcacacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattc 24150558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 36055007 - 36054731
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36055007 aggaatgtaaaacatttttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 36054908  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||| ||||    
T  36054907 taaaaattgtctgctagttttcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatctattaac 36054808  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36054807 aatctcacacctaaccttgagacttttttgtctcccacacatagccttgagattttgtaatactcttccaaattcat 36054731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 131 - 391
Target Start/End: Original strand, 35731016 - 35731289
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  35731016 aggaatgtaaaacattcttgtggtattcaattaagattttcaagattttttaatgagtccaatcaaatccagtggtattcaattgagattttgcataact 35731115  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| |||| |||||    
T  35731116 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgcacctgctaac 35731215  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaatt 391  Q
    ||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  35731216 aatctcacacctagcattgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaatt 35731289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 131 - 390
Target Start/End: Complemental strand, 38629800 - 38629528
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||  || | |||||||||||||||||||||||||    
T  38629800 aggaatgtaaaacatttttgtggtattcaattaggattttcaagattttttaatgagttcaatgaaattcagcggtattcaattgagattttgcataact 38629701  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  38629700 taaaaattgtctactggtattcaaaactatacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 38629601  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaat 390  Q
    |||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  38629600 aatctcacacctagccttgagatttttctatctcccacacatagccttgagattttgtaatactcttccaaat 38629528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 133 - 394
Target Start/End: Original strand, 30588925 - 30589200
Alignment:
Q  133 gaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataactta 232  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||    
T  30588925 gaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaattcagtggtattcaattgagatttagcataactta 30589024  T
Q  233 aaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaa 319  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  30589025 aaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaacaa 30589124  T
Q  320 tctcacacctagtcttgagac-ttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||  |||||||| |||| | || || |||||||||||| ||||||||||||||||||||||||||||    
T  30589125 tctcacacctaaccttgagactttttttatcacccacacatagccttcagattttgtaatactcttccaaattcat 30589200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 133 - 392
Target Start/End: Complemental strand, 50900445 - 50900173
Alignment:
Q  133 gaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataactta 232  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  50900445 gaatgtaaaacattcttgtggtattcaattaggattttcaagcttttttaatgagtccaatgaaatccagtggtattcgattgagattttgcataactta 50900346  T
Q  233 aaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaa 319  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||             |||| |||||||||||| |||||||||    
T  50900345 aaaattgtctactggtattcaaaactctagagattttaatggattgttgtgagtaatggattttgtgagattgtttaatgtaaaatgtacatactaacaa 50900246  T
Q  320 tctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||| |||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  50900245 tctcacacctagccttgagacttttctatctcccacacatttccttgagattttgtaatactcttccaaattc 50900173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 134 - 391
Target Start/End: Complemental strand, 19552145 - 19551885
Alignment:
Q  134 aatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaa 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| |||| |||| ||||||||||||||||||    
T  19552145 aatgtaaaacattcttgtggtattcaattaggattttcaagattttttaacgagttcaatgaaatccagtggtatttaattaagattttgcataacttaa 19552046  T
Q  234 aaattgtttactagtattcaaaactctacggattttaatggattgttg----tgagtaatggatttagtgtaaaatgtacctactaacaatctcacacct 329  Q
    ||||||| || | |||||||||||||||| ||||||||| ||||||||    || | ||| | |||||||||||||||||||| ||||||||||||||||    
T  19552045 aaattgtctagtggtattcaaaactctacagattttaattgattgttgattttgtgaaattg-tttagtgtaaaatgtacctaataacaatctcacacct 19551947  T
Q  330 agtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaatt 391  Q
    || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||    
T  19551946 agccttgagacttttctttctcccacatatagccttgagattttgtaatactcttccaaatt 19551885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 13662632 - 13662887
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  13662632 aggaatgtaaaacattctcgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagatttcgcacaact 13662731  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  13662732 taaaaattgtctactcgtattcaaaacactacgggttttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 13662831  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||    
T  13662832 aatctcacacctagccttgagacttttctgcctcccacacataaccttgagatttt 13662887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 46252203 - 46251948
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  46252203 aggaatgcaaaatatttttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 46252104  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | || |||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  46252103 taaaaattgtctgctggtattcaaaactttacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 46252004  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| |||||||||||||||||||| |||||||  || ||||||||    
T  46252003 aatctcacacctagccttgagacttttctgtctcccacacataagctcgagatttt 46251948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 131 - 360
Target Start/End: Original strand, 26555898 - 26556123
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26555898 aggaatgtaaaatattattgtggtattcaattaggattttctagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 26555997  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggatttagtgtaaaatgtacctactaacaatctcacaccta 330  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||||||||||||||||||||||||    
T  26555998 taaaaattgtctacgggtattcaaaactctacggattttaatggatt-ttgtgag-attg--tttagtgtaaaatgtacctactaacaatctcacaccta 26556093  T
Q  331 gtcttgagacttttctgtctcctacacata 360  Q
    | |||||||||||||| ||||| |||||||    
T  26556094 gccttgagacttttctatctcccacacata 26556123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 26005983 - 26005770
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26005983 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 26005884  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  26005883 taaaaattgtctactggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 26005784  T
Q  318 aatctcacacctag 331  Q
    ||||||||||||||    
T  26005783 aatctcacacctag 26005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 27593236 - 27593490
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||  |||| |||||||||||| ||||||| | ||    
T  27593236 aggaatctaaaacattcttgtggtattcaattaggattttcatgattttttaatgagtccaataaaattcagtggtattcaattgaggttttgcacatct 27593335  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  27593336 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatgtacctactaac 27593435  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||  |||||||||||| ||||||| ||||||||| |||||||||    
T  27593436 aatctcacacctaaccttgagacttttttgtctccaacacatagctttgagattt 27593490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 39338297 - 39338046
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| ||||||||| ||||||||||||||||| |  ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  39338297 aggaatctaaaatattcttgtgttattcaattaggatttttaggattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaact 39338198  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-----------tttagtgtaaaatgtacctactaacaa 319  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  39338197 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgagactttttagtgtaaaatgtacctactaacaa 39338098  T
Q  320 tctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||  |||||||||||| ||||||| ||| |||||||| ||||||    
T  39338097 tctcacacctaaccttgagactttt-tgtctcccacaaatagccttcagattt 39338046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 218 - 394
Target Start/End: Complemental strand, 26005768 - 26005579
Alignment:
Q  218 attttgcataacttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt-------------agtgtaaaa 304  Q
    ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  26005768 attttgcataacttaaaaattgtctattggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaa 26005669  T
Q  305 tgtacctactaacaatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  26005668 tgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattcat 26005579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 52024199 - 52024035
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||| || |    
T  52024199 aggaatgtaaaacattcttgtggtattcaattatgattttcaagattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaatt 52024100  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
    |||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  52024099 taaaaattgtctattagtaatcaaaattctacggattttaatggattgttgtgagtaatggattt 52024035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 36786055 - 36786309
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||| |||||||||| ||||| |  ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  36786055 aggaatctaaaacattcttgtggcattcaattagaattttaaggattttttaatgagtccaataaaatccagtggtattcaattgagattttgcaaaact 36786154  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    | ||| |||| || | |||||||||| | || ||||||||||| ||||||||||||||||||             |||||||||||||||||||||||||    
T  36786155 ttaaacttgtctattggtattcaaaattgtaaggattttaatgaattgttgtgagtaatggattttatgagactttttagtgtaaaatgtacctactaac 36786254  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||| ||||||| | |||||||||||| ||||||  ||||||||||||||||||||    
T  36786255 aatcacacacct-gccttgagacttttttgtctctcacacatagccttgagatttt 36786309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 134 - 295
Target Start/End: Original strand, 38682513 - 38682673
Alignment:
Q  134 aatgtaaaacattcttgtggtattcaattaggattttcaatatttt-ttaatgagtccaatgaaatctagtgatattcaattgagattttgcataactta 232  Q
    ||||||||| ||| |||||||||||||||| ||||||||| ||||| |||||||||||||| || |  ||||||||||||||||||||||||| ||||||    
T  38682513 aatgtaaaa-attattgtggtattcaattatgattttcaagatttttttaatgagtccaataaacttcagtgatattcaattgagattttgcacaactta 38682611  T
Q  233 aaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
    ||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38682612 aaaattg-ttattggtattcaaaattctacggattttaatggattgttgtgagtaatggattt 38682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 53184073 - 53183972
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  53184073 aggaaggtaaaacattcttgtgctattcaattaggattttcaagattttttaatgagtccaataaaatctggtggtattcaattgagattttgcataact 53183974  T
Q  231 ta 232  Q
    ||    
T  53183973 ta 53183972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 26293690 - 26293625
Alignment:
Q  8 cgaaaatatgcatgcatatcgcgtgcatcaatcacttccaagtgtattgaattgaaatttcaaagg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26293690 cgaaaatatgcatgcatatcgcgtgcatcaatcacttccaagtgtattgaattgaaatttcaaagg 26293625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 23753930 - 23753979
Alignment:
Q  409 tttcttccaaattcttttctattc---tgtaacaatggcaggttatatat 455  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||    
T  23753930 tttcttccaaattcttttctattctattgtaacaatggcaggttatatat 23753979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 33119619 - 33119571
Alignment:
Q  150 gtggtattcaattaggattttcaatattttttaatgagtccaatgaaat 198  Q
    |||||||||||||||||||||||| ||||||||| || |||||| ||||    
T  33119619 gtggtattcaattaggattttcaagattttttaaagaatccaataaaat 33119571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 24574900 - 24574858
Alignment:
Q  150 gtggtattcaattaggattttcaatattttttaatgagtccaa 192  Q
    |||||||||||||||||||||||| ||||||||| || |||||    
T  24574900 gtggtattcaattaggattttcaaaattttttaaagaatccaa 24574858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 6784088 - 6783992
Alignment:
Q  144 attcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgt 240  Q
    ||||| |||||||| ||||| ||||||||  ||||||||| ||||||||  ||||   ||| ||||| ||  ||||||| || ||||||||||||||    
T  6784088 attctggtggtattaaattaagattttcaggattttttaaagagtccaaccaaattcggtggtattccatcaagattttccacaacttaaaaattgt 6783992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 43057681 - 43057405
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  43057681 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 43057582  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  43057581 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 43057482  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  43057481 aatctcacacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattcat 43057405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 30110887 - 30111163
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  30110887 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 30110986  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||| ||||    
T  30110987 taaaaattgtctgctattattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatctattaac 30111086  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30111087 aatctcacacctaaccttgagacttttttgtctcccacacatagccttgagattttgtaatactcttccaaattcat 30111163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 151942 - 152213
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  151942 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 152041  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  152042 taaaaattgtctaatggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 152141  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaa 389  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||    
T  152142 aatctcacacctagccttgagacttttctatctcccacacatagcctttagattttgtaatactctaccaaa 152213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 35090106 - 35089830
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  35090106 aggaatataaaacattcttgtggtattcaattaggattttcatgattttttaatgagtccaatgaaatcaagtggtattcaattgagattttgcataact 35090007  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggatttagtg-------------taaaatgtacctactaac 317  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||             ||||||||||||||||||    
T  35090006 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtgagattgtttggtataaaatgtacctactaac 35089907  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35089906 aatctcacacctaaccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattcat 35089830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 27418642 - 27418366
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  27418642 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 27418543  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||| ||||    
T  27418542 taaaaattgtctgctagtaatcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatctattaac 27418443  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  ||||||||||||  |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  27418442 aatctcacacctaaccttgagactttttggtctcccacacaaagccttgagattttgtaatactcttccaaattcat 27418366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 39301245 - 39301002
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || || |||| |||||||||||||||||||| ||||    
T  39301245 aggaatctaaaacattcttgtggtattcaattaggattttcagaattttttaatgagtccaataaattccagtggtattcaattgagattttgcacaact 39301146  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-tttagtgtaaaatgtacctactaacaatctcacacct 329  Q
    |||||||||| || | |||||||||| | || |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  39301145 taaaaattgtctattggtattcaaaattgtaaggattttaatagattgttgtgagtaatggattttaatgtaaaatgtacctactaacaatctcacacct 39301046  T
Q  330 agtcttgagac-ttttctgtctcctacacatagccttgagattt 372  Q
    |  |||||||| |||| ||||||| ||| |||||||||||||||    
T  39301045 aaccttgagactttttttgtctcccacatatagccttgagattt 39301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 47915057 - 47914893
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  47915057 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 47914958  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
    |||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  47914957 taaaaattgtctgctagtattcaaaactctacagatttttatggattgttgtgagtaatggattt 47914893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 40097178 - 40097434
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||  |||| ||||||||| |||||||||| ||||    
T  40097178 aggaatctaaaacattcttgtggtattcaattatgattttcaaaattttttaatgagtccaataaaattcagtggtattcaattcagattttgcacaact 40097277  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| |||||||||||||||||| ||| |||||||             |||| ||||||||| | ||||||||    
T  40097278 taaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgactaatggattttgtgagactttttaatgtaaaatgcatctactaac 40097377  T
Q  318 aatctcacacctagtcttgagac-ttttctgtctcctacacatagccttgagatttt 373  Q
    ||||||||||||||  ||||||| |||| ||||||| |||||||| |||||||||||    
T  40097378 aatctcacacctagctttgagactttttttgtctcccacacatagtcttgagatttt 40097434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 47914153 - 47914053
Alignment:
Q  294 ttagtgtaaaatgtacctactaacaatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattca 393  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47914153 ttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgagattttgtaatactcttccaaattca 47914054  T
Q  394 t 394  Q
    |    
T  47914053 t 47914053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 24939631 - 24939544
Alignment:
Q  150 gtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaat 237  Q
    |||||||||||||| ||||||||  | ||||||| ||||||||  ||||||  || ||||||||| | ||||| ||||||||||||||    
T  24939631 gtggtattcaattatgattttcatgaatttttaaagagtccaacaaaatctgatggtattcaattaaaatttttcataacttaaaaat 24939544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 31494345 - 31494469
Alignment:
Q  153 gtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagtattc 252  Q
    |||||||||||||||||| |  ||||||||| ||||| ||  |||||| ||| ||||||||  |||||||  | |||||||||||||| |  | |||||     
T  31494345 gtattcaattaggattttaatgattttttaaagagtcaaacaaaatctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtatta 31494444  T
Q  253 aaaactctacggattttaatggatt 277  Q
    |||| | ||  ||||||||||||||    
T  31494445 aaaaatgtattgattttaatggatt 31494469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 152234 - 152283
Alignment:
Q  409 tttcttccaaattcttttctattct---gtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  152234 tttcttccaaattcttttctgttctactgtaacaatggcaggttatatat 152283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 43057382 - 43057333
Alignment:
Q  409 tttcttccaaattcttttctattct---gtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  43057382 tttcttccaaattcttttctgttctactgtaacaatggcaggttatatat 43057333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 33474820 - 33474848
Alignment:
Q  363 cttgagattttgtaatactcttccaaatt 391  Q
    |||||||||||||||||||||||||||||    
T  33474820 cttgagattttgtaatactcttccaaatt 33474848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 41386870 - 41386594
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  41386870 aggaatgtataacattgttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 41386771  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  41386770 taaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttatgagattgtttagtgtaaaatgtacctactaac 41386671  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41386670 aatctcacacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattcat 41386594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 2112875 - 2113151
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  2112875 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagatttcgcataact 2112974  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||| ||    
T  2112975 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactgac 2113074  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    ||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2113075 aatctcacacctagcattgagacttttctgtctcccacatatagccttgagattttgtaatactcttccaaattcat 2113151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 131 - 392
Target Start/End: Complemental strand, 43605364 - 43605090
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  43605364 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagatttcgcataact 43605265  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||             |||| |||||||||||| |||||||    
T  43605264 taaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttaatgtaaaatgtacttactaac 43605165  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  43605164 aatctcacacctagccttgagacttttttgtctcccacacatagccttgagattttgtaatactcttccaaattc 43605090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 7148124 - 7148400
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||    
T  7148124 aggaatgtaaaacattcttgtggcattcaattaggattttcaagattttttaaggagtccaatgaaatccagtggtattcaattgagattttgcataact 7148223  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    || ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  7148224 tagaaattgtctactggcattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 7148323  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  7148324 aatctcacacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattcat 7148400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 131 - 391
Target Start/End: Original strand, 42275056 - 42275330
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||||||||||||    
T  42275056 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtcaaatgaaatccagcggtattcaattgagattttgcataact 42275155  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaa- 316  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||             ||||||||||||||||||||||||     
T  42275156 taaaaattgtctactagtattcaaaactctacggatttttatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 42275255  T
Q  317 caatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaatt 391  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  42275256 caatctcacacctagccttgagacttttctgtctcccacacataaccttgagattttgtaatactcttccaaatt 42275330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 29260276 - 29260000
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||    
T  29260276 aggaatgtaaaacattcttgtgatattcaattaggattttcgagattttttaacgagtccaatgaaatccagtggtattcaattgagattttgcataact 29260177  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| |||||||    
T  29260176 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacgtactaac 29260077  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  29260076 aatctcacacctaaccttgagacttttctatctcccacacatagccttgagattttgtaatactattccaaattcat 29260000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 131 - 389
Target Start/End: Complemental strand, 40265281 - 40265010
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  40265281 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 40265182  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  40265181 taaaaattgtctaatggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 40265082  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaa 389  Q
    |||||||||||||| |||||||||||||| ||||| |||| ||||||| ||||||||||||||||| |||||    
T  40265081 aatctcacacctagccttgagacttttctatctcccacacgtagcctttagattttgtaatactctaccaaa 40265010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 131 - 390
Target Start/End: Original strand, 4655131 - 4655403
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  4655131 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaattcagtggtattcaattgagattttgcataact 4655230  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||||||             ||||||||||||||||| |||||||    
T  4655231 taaaaattgtctaccggtattcaaaactctacggattttaatggattgttatgagtaatggattttgtgagattgtttagtgtaaaatgtacatactaac 4655330  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaat 390  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||    
T  4655331 aatctcacacctagccttgagacttttctatctctcacacatagccttgagattttgtgatactcttccaaat 4655403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 134 - 352
Target Start/End: Complemental strand, 10802768 - 10802537
Alignment:
Q  134 aatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaa 233  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10802768 aatgtaaaacattcttgtagtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataacttaa 10802669  T
Q  234 aaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaat 320  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||    
T  10802668 aaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaacaat 10802569  T
Q  321 ctcacacctagtcttgagacttttctgtctcc 352  Q
    ||||||||||| ||||||||||||||||||||    
T  10802568 ctcacacctagccttgagacttttctgtctcc 10802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 28619927 - 28620183
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatat-tttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||  |||| ||||||||||||||||||||||||    
T  28619927 aggaatgtaaaacattcttgtggtattcaattaggattttcaagatatttttaatgaatccaatgaaattcagtggtattcaattgagattttgcataac 28620026  T
Q  230 ttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaa 316  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |             |||| |||| ||||||||||||||    
T  28620027 ttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaactttgtgagattgtttaatgtacaatgtacctactaa 28620126  T
Q  317 caatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  28620127 caatctcacacctaatcttgagacttttctgtctcccacacataaccttgagatttt 28620183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 168 - 392
Target Start/End: Complemental strand, 41965761 - 41965526
Alignment:
Q  168 tttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagtattcaaaactctacggatt 267  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||  |||    
T  41965761 tttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataactt--aaattgtctactggtattcaaaactctacatatt 41965664  T
Q  268 ttaatggattgttgtgagtaatgg-------------atttagtgtaaaatgtacctactaacaatctcacacctagtcttgagacttttctgtctccta 354  Q
    ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |    
T  41965663 ttaatggattgttgtgagtaatggattttgtgagattatttagtgtaaaatgtacctactaacaatctcgcacctagccttgagacttttctatctccca 41965564  T
Q  355 cacatagccttgagattttgtaatactcttccaaattc 392  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41965563 cacatagccttgagattttgtaatactcttccaaattc 41965526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 4302808 - 4302551
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||  | || |||||||||||||||||||| ||||    
T  4302808 aggaatctaaaacattcttgtggtattcaattaggattttcaggattttttaatgagtccaataaaattcaatggtattcaattgagattttgcacaact 4302709  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggat-------------ttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || |||||||||||| | || |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||    
T  4302708 taaaaattgtctattagtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttagcgagactttttagtgtaaaatgtacctactaac 4302609  T
Q  318 aatctcacacctagtcttgagac--ttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| ||||||||  |||| ||||||| ||||||||||||||||||||    
T  4302608 aatctcacacctagccttgagacatttttttgtctcccacacatagccttgagatttt 4302551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 339
Target Start/End: Original strand, 9457627 - 9457848
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  9457627 aggaatgtaaaacattcttgtggtattcatttagaattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 9457726  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  9457727 taaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatgagattgtttagtgtaaaatgtacctactaac 9457826  T
Q  318 aatctcacacctagtcttgaga 339  Q
    |||||||||||||  |||||||    
T  9457827 aatctcacacctaaccttgaga 9457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 132 - 352
Target Start/End: Original strand, 8502717 - 8502950
Alignment:
Q  132 ggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataactt 231  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||  ||| ||||||||| |||||||||| |||||    
T  8502717 ggaatgtaaaacattcttgtggtattcaattaggattttcaagatttttgaatgagtccaataaaatccggtggtattcaattaagattttgcacaactt 8502816  T
Q  232 aaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaaca 318  Q
    ||||||||| || | ||||| |||| |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  8502817 aaaaattgtctattggtatttaaaattctacggattttaatggattgttgtgagtaatggattttatgagactttttagtgtaaaatgtacctactaaca 8502916  T
Q  319 atctcacacctagtcttgagacttttctgtctcc 352  Q
    ||||||||| ||| ||| ||||||||| ||||||    
T  8502917 atctcacacatagccttaagacttttccgtctcc 8502950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 30382674 - 30382420
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||||||| ||| |||| ||||| |||| |||||||||||||||||||| ||||    
T  30382674 aggaatctaaaacattcttgtggtattcaattaggattttcatgattttttaattagttcaataaaatccagtggtattcaattgagattttgcacaact 30382575  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || |||||||||||||||||||||||||||  |             |||||||||||||||||||||||||    
T  30382574 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatcaattttgtgagactttttagtgtaaaatgtacctactaac 30382475  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    ||||||||| |||  |||||||||||| ||||||| ||||||| | |||||||||    
T  30382474 aatctcacatctaaccttgagacttttttgtctcccacacataactttgagattt 30382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 37567363 - 37567118
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||         |||||||||||||| ||||| |||  |||||||||||||||||||| ||||    
T  37567363 aggaatctaaaacattcttgtggtattcaattaggatttt---------ttaatgagtccaataaaatccagtagtattcaattgagattttgcacaact 37567273  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | |||||||||||||| ||||||||||||||||||             |||||||||||||||| ||||||||    
T  37567272 taaaaattgtctattggtattcaaaattgtacggattttaatgaattgttgtgagtaatggattttgtgaggctttttagtgtaaaatgtatctactaac 37567173  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||||| ||||||    
T  37567172 aatctcacacctaaccttgagacttttttgtctcccacacatagccttaagattt 37567118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 35142126 - 35142290
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||  ||||||||| |||||||| | ||||    
T  35142126 aggaatgtaaaacatttttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatccggtcgtattcaattaagattttgtacaact 35142225  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
    |||||||||| || | ||||||||||   ||||||||||| | ||||||||||||||||||||||    
T  35142226 taaaaattgtctattggtattcaaaatattacggattttattagattgttgtgagtaatggattt 35142290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 1606013 - 1605904
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  1606013 aggaatgtaaaacattcttgtggtattcaattaagattttcaagattttttaatgagtctaatgaaatccagtagtattcaattgagattttgcataact 1605914  T
Q  231 taaaaattgt 240  Q
    ||||||||||    
T  1605913 taaaaattgt 1605904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 9209120 - 9209278
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||| |||||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||| ||||||||||| |||||| | ||||    
T  9209120 aggaatctaaaacatttttgtggtattcaattaagattttcaggattttttaatgagttcaataaaatccagtggtattcaattgaaattttggacaact 9209219  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaat 289  Q
    |||||||||| || | ||||||||||||||| |||||||||| | |||||||| |||||    
T  9209220 taaaaattgtctattggtattcaaaactctaaggattttaatagtttgttgtgggtaat 9209278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 40013472 - 40013360
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||| ||||  |||| ||||||||| |||||||||| ||||    
T  40013472 aggaatgtaaaacattcatgtggtatttaattaggattttcaagattttttaatgagttcaataaaattcagtggtattcaatttagattttgcacaact 40013373  T
Q  231 taaaaattgttta 243  Q
    |||||||||||||    
T  40013372 taaaaattgttta 40013360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 41965404 - 41965324
Alignment:
Q  312 actaacaatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  41965404 actaacaatctcgcacctagccttgagacttttctatctcccacacatagccttgagattttgtaatactcttccaaattc 41965324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 40013324 - 40013265
Alignment:
Q  293 tttagtgtaaaatgtacctactaacaatctcacacctagtcttgagacttttctgtctcc 352  Q
    |||||| |||||| ||||||||||||||||||||| | | ||||||||||||||||||||    
T  40013324 tttagtataaaatatacctactaacaatctcacacttggccttgagacttttctgtctcc 40013265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 9457841 - 9457873
Alignment:
Q  362 ccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||||||||||||||||||||||    
T  9457841 ccttgagattttgtaatactcttccaaattcat 9457873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 29259982 - 29259933
Alignment:
Q  409 tttcttccaaattcttttctattct---gtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  29259982 tttcttccaaattcttttctgttctattgtaacaatggcaggttatatat 29259933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 35142301 - 35142360
Alignment:
Q  293 tttagtgtaaaatgtacctactaacaatctcacacctagtcttgagacttttctgtctcc 352  Q
    ||||||||||||| |||||||||||| ||||||| |||| ||  ||||||||| ||||||    
T  35142301 tttagtgtaaaatctacctactaacactctcacaactagcctcaagacttttcggtctcc 35142360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 40264988 - 40264939
Alignment:
Q  409 tttcttccaaattcttttctattct---gtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  40264988 tttcttccaaattcttttctgttctactgtaacaatggcaggttatatat 40264939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 9209295 - 9209325
Alignment:
Q  293 tttagtgtaaaatgtacctactaacaatctc 323  Q
    |||||||||||||||||||||||||||||||    
T  9209295 tttagtgtaaaatgtacctactaacaatctc 9209325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 9082516 - 9082487
Alignment:
Q  19 atgcatatcgcgtgcatcaatcacttccaa 48  Q
    ||||||||||||||||||||||||||||||    
T  9082516 atgcatatcgcgtgcatcaatcacttccaa 9082487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 23185801 - 23185890
Alignment:
Q  151 tggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgt 240  Q
    ||||||||||||||||||||||| |  |||||  |  |||||| |||||| ||| ||||||||  | ||||| || ||||||||||||||    
T  23185801 tggtattcaattaggattttcaaaaaattttataggatccaataaaatctggtggtattcaatcaaaatttttcacaacttaaaaattgt 23185890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 32664656 - 32664685
Alignment:
Q  19 atgcatatcgcgtgcatcaatcacttccaa 48  Q
    ||||||||||||||||||||||||||||||    
T  32664656 atgcatatcgcgtgcatcaatcacttccaa 32664685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 29941029 - 29941305
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  29941029 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtctaatgaaatccagtggtattcaattgagattttgcataact 29941128  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  29941129 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 29941228  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  29941229 aatctcacacctagccttgagacttttctatctcccacatatagccttgagattttgtaatactcttccaaattcat 29941305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 131 - 387
Target Start/End: Complemental strand, 6289501 - 6289232
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  6289501 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgaatccaatgaaatccagtggtattcaattgagattttgcataact 6289402  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  6289401 taaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 6289302  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttcca 387  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  6289301 aatctcacacctagccttgagacttttttgtctcccacacatagccttgagattttgtaatactcttcca 6289232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 45547015 - 45547291
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||    
T  45547015 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaattcagtggtattcaattgagatttagcataact 45547114  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||    
T  45547115 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtaagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 45547214  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  45547215 aatctcacacctaaccttgagacttttatatctcccacacatagccttgagattttgtaatacacttccaaattcat 45547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 11534919 - 11535173
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  ||||||||||||||||||| ||||    
T  11534919 aggaatctaaaacattcttgtggtatttaattaggattttcaggattttttaatgagtccaataaaatccagtggaattcaattgagattttgcacaact 11535018  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  11535019 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatgtacctactaac 11535118  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||| ||  |||||||||||| ||||||| ||||||||| |||||||||    
T  11535119 aatctcacacataaccttgagacttttttgtctcccacacatagctttgagattt 11535173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 20157757 - 20157502
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||| ||||||||| |||||||||| ||||    
T  20157757 aggaatctaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaataaaattcagtggtattcaattcagattttgcacaact 20157658  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||| ||||| || | |||||||||| |||| |||||||||| ||||||| |||||||||||             |||||||||||||| | ||||||||    
T  20157657 taaatattgtctattggtattcaaaattctaaggattttaatagattgttatgagtaatggattttgtgagactttttagtgtaaaatgcatctactaac 20157558  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    ||||||||||||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  20157557 aatctcacacctagctttgagacttttttgtctcccacacatagtcttgagatttt 20157502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 34028933 - 34028677
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtcc-aatgaaatctagtgatattcaattgagattttgcataac 229  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||| ||||||||| |||||||||| |||    
T  34028933 aggaatctaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaaataaaatccagtggtattcaattcagattttgcacaac 34028834  T
Q  230 ttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaa 316  Q
    ||||||||||| || | |||||||||| | || ||||||||||||||||||  ||||||||||             |||||||||||||| | |||||||    
T  34028833 ttaaaaattgtctattggtattcaaaattataaggattttaatggattgttacgagtaatggattttgtgagactttttagtgtaaaatgcatctactaa 34028734  T
Q  317 caatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    ||||||||||||||| |||||||||||| ||||| | |||||||| |||||||||||    
T  34028733 caatctcacacctagccttgagacttttttgtctgccacacatagtcttgagatttt 34028677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 138 - 372
Target Start/End: Complemental strand, 24193479 - 24193232
Alignment:
Q  138 taaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaat 237  Q
    ||||||||||||||| ||||||||||| |||||||  ||||||||||||||||||| ||||  |||| |||||||||||||||||||| |||||||||||    
T  24193479 taaaacattcttgtgatattcaattagaattttcaggattttttaatgagtccaataaaattcagtggtattcaattgagattttgcacaacttaaaaat 24193380  T
Q  238 tgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaatctca 324  Q
    ||| || | |||||||||| | || ||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  24193379 tgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatgtacctactaacaatctca 24193280  T
Q  325 cacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    ||| ||  |||||||||||| ||||||| |||||||| ||||| ||||    
T  24193279 cacttaaccttgagacttttttgtctcccacacatagtcttgaaattt 24193232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 131 - 367
Target Start/End: Complemental strand, 11998417 - 11998169
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||| || | ||||||||||||||||| || ||||    
T  11998417 aggaatctaaaacattcttgtcgtattcaattaggattttcagaattttttaatgagtccaataaaatccagaggtattcaattgagattttacacaact 11998318  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| |||||||||||| |||||||||||||||||             |||||||||||||||| |||| |||    
T  11998317 taaaaattgtctattggtattcaaaattctaaggattttaatggtttgttgtgagtaatggattttgtgagactttttagtgtaaaatgtatctaccaac 11998218  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttga 367  Q
    ||||||||||| || ||||||| |||| ||||||| ||||||||||||||    
T  11998217 aatctcacacc-agccttgagatttttttgtctcccacacatagccttga 11998169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 24193633 - 24193874
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||   ||| |||||||||||||||||||| ||||    
T  24193633 aggaatataaaacatttttgtggtattcaattaggattttcaagattttttaatgagtccaataaaattcggtggtattcaattgagattttgcacaact 24193732  T
Q  231 taaaaattgtttactagtattcaaaactctacgga-------ttttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacc 310  Q
    |||||| |||||| | |||||||||| |||||| |       ||||||||||||| |||||||||||||             ||||||||||||||||||    
T  24193733 taaaaactgtttattggtattcaaaattctacgaattttaatttttaatggattgctgtgagtaatggattttgtgagactttttagtgtaaaatgtacc 24193832  T
Q  311 tactaacaatctcacacctagtcttgagacttttctgtctcc 352  Q
    ||||||||||||||||| ||| ||  ||||||||||||||||    
T  24193833 tactaacaatctcacacttagcctcaagacttttctgtctcc 24193874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 45485445 - 45485599
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||  |||| |||||||||||||||||||||||      
T  45485445 aggaatgtaaaacattcttgtggtattcaattaggattttcaagatttttcaatgaatccaataaaattcagtggtattcaattgagattttgcataa-- 45485542  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
            || ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  45485543 --------gtctactaatattcaaaattctatggattttaatggattgttgtgagtaatggattt 45485599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 38822915 - 38822824
Alignment:
Q  150 gtggtattcaattaggattttcaata-ttttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgt 240  Q
    |||||||||||||||||||||||| | |||||||| || |||||  |||||  ||| ||||| ||  ||||||| || ||||||||||||||    
T  38822915 gtggtattcaattaggattttcaagatttttttaaagaatccaacaaaatccggtggtattcgatcaagatttttcacaacttaaaaattgt 38822824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 27090732 - 27090828
Alignment:
Q  144 attcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgt 240  Q
    ||||| |||||||||||||||||||||    ||||||||| ||||||||  ||||  |||| ||||||| |  ||||||  | ||||||||||||||    
T  27090732 attctggtggtattcaattaggattttactgattttttaaagagtccaacaaaattcagtggtattcaactatgatttttaacaacttaaaaattgt 27090828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 134 - 395
Target Start/End: Complemental strand, 6476710 - 6476436
Alignment:
Q  134 aatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaa 233  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  6476710 aatgtaaaacatttttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatccagtggtattcaattgagattttgcataacttaa 6476611  T
Q  234 aaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaat 320  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| |||||||||||    
T  6476610 aaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtaactactaacaat 6476511  T
Q  321 ctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcata 395  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  6476510 ctcacacctagccttgagacttttctgtctcccacacatagccttgagattttgtaatactctttcaaattcata 6476436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 29834285 - 29834064
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  29834285 aggaatgtaaaacattcttgtggtatgcaattagaattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 29834186  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  29834185 taaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatgagattgtttagtgtaaaatgtacctactaac 29834086  T
Q  318 aatctcacacctagtcttgaga 339  Q
    |||||||||||||  |||||||    
T  29834085 aatctcacacctaaccttgaga 29834064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 29865719 - 29865498
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  29865719 aggaatgtaaaacattcttgtggtatgcaattagaattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 29865620  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  29865619 taaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatgagattgtttagtgtaaaatgtacctactaac 29865520  T
Q  318 aatctcacacctagtcttgaga 339  Q
    |||||||||||||  |||||||    
T  29865519 aatctcacacctaaccttgaga 29865498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 365
Target Start/End: Complemental strand, 3110285 - 3110038
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  3110285 aggaatgtaaaacatttttgtggtattcaattagaattttcaagattttttaatgagtccaatgaaatccagtgatattcaattgagattttgcctaact 3110186  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    | |||||||| | |   |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| |||| ||    
T  3110185 tgaaaattgtgtgcagttattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacatactgac 3110086  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagcctt 365  Q
    |||||| |||||||| || |||||||||| ||||| ||||||||||||    
T  3110085 aatctcgcacctagtattaagacttttctatctcccacacatagcctt 3110038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 10644014 - 10643758
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttg--cataa 228  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||| ||||||||||||||||||  || ||    
T  10644014 aggaatctaaaacattcttgtggtattcaattaggattttcaggattttttaatgagtccaataaaatccagtggtattcaattgagattttgatcacaa 10643915  T
Q  229 cttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctacta 315  Q
    |||||||||||| || | ||| |||||| | || ||||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  10643914 cttaaaaattgtctattggtaatcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatgtacctacta 10643815  T
Q  316 acaatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    ||||||||||||||| |||| |||||||| ||||||| |||||||||||| ||||||    
T  10643814 acaatctcacacctaatcttaagacttttttgtctcccacacatagccttaagattt 10643758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 30877936 - 30878191
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||| | | ||    
T  30877936 aggaatctaaaatattcttgtgatattcaattaggattttcaagattttttaatgagtccaataaaatctagtggtattcaattcagattttgtacagct 30878035  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| |||||||||||||||||| |||||||||||             |||||||||||||| | ||||||||    
T  30878036 taaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttagtgtaaaatgcatctactaac 30878135  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    ||||||||| |||| |||||||||||| ||||||| |||||||| |||||||||||    
T  30878136 aatctcacatctagccttgagacttttttgtctcccacacatagtcttgagatttt 30878191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 7858374 - 7858210
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |  | || |||||||||||||||||||| ||||    
T  7858374 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagttcaataaagtgcactggtattcaattgagattttgcacaact 7858275  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattt 295  Q
    |||||||||| || |  ||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  7858274 taaaaattgtctattgatattcaaaattctacggattttaatgcattgttgtgagtaatagattt 7858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 392
Target Start/End: Complemental strand, 29834071 - 29834041
Alignment:
Q  362 ccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||||||||||||||||||||    
T  29834071 ccttgagattttgtaatactcttccaaattc 29834041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 392
Target Start/End: Complemental strand, 29865505 - 29865475
Alignment:
Q  362 ccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||||||||||||||||||||    
T  29865505 ccttgagattttgtaatactcttccaaattc 29865475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 131 - 392
Target Start/End: Original strand, 40410674 - 40410948
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40410674 aggaatgtaaaacattcttgtggtattcaattaggattttcatgattttttaatgagtccaatgaaatctagtggtattcaattgagattttgcataact 40410773  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  40410774 taaaaattgtctactcgtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 40410873  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||    
T  40410874 aatctcacacctagacttgagacttttctatctcccacacatagccttgaaattttgtaatacttttccaaattc 40410948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 6828792 - 6828537
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  6828792 aggaatctaaaacattcttgtggtatttaattaggattttcaggattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaact 6828693  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || |  ||||||||| | || |||||||||||||||||| |||||||||||             |||||||||||||||||||||||||    
T  6828692 taaaaattgtctattgatattcaaaattgtaaggattttaatggattgttatgagtaatggattttgtgagactttttagtgtaaaatgtacctactaac 6828593  T
Q  318 aatctcacacctagtcttgagac-ttttctgtctcctacacatagccttgagattt 372  Q
    ||||||||| |||  |||||||| |||| ||||||| ||||||||| |||||||||    
T  6828592 aatctcacatctaaccttgagactttttttgtctcccacacatagctttgagattt 6828537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 17518512 - 17518747
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctag-tgatattcaattgagattttgcataac 229  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||  | || ||||||||| |||||||||| |||    
T  17518512 aggaatgtaaaacattcttgtgctattcaattaggattttcaagattttttaaagagtccaataaaatcccggtggtattcaattaagattttgcacaac 17518611  T
Q  230 ttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaa 316  Q
    |||||||||||||| | | |||||||| |||||||||||||||||| ||||| ||||||||||             ||||||||||||||||||||||||    
T  17518612 ttaaaaattgtttattgggattcaaaattctacggattttaatggaatgttgcgagtaatggattttgtgagactttttagtgtaaaatgtacctactaa 17518711  T
Q  317 caatctcacacctagtcttgagacttttctgtctcc 352  Q
    |||||||||||| || ||  ||||||||||||||||    
T  17518712 caatctcacacccagcctcaagacttttctgtctcc 17518747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 10571195 - 10571429
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||  ||| ||||||||| |||||||| | ||||    
T  10571195 aggaatgtaaaacattcttgtggtattcaattaggattttcaaaattttttaaagagtccaataaaatccggtggtattcaattaagattttgtacaact 10571294  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| | | |||||| ||||||||| || ||||||             |||||| |||||||||| |||||||    
T  10571295 taaaaattgtctattggtattcaaaattctatgaaatttaatagattgttgtcaggaatggattttgtgaaactttttagtataaaatgtacatactaac 10571394  T
Q  318 aatctcacacctagtcttgagacttttctgtctcc 352  Q
    |||||||||||||  ||| ||||||||||||||||    
T  10571395 aatctcacacctaaccttaagacttttctgtctcc 10571429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 6902647 - 6902525
Alignment:
Q  155 attcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagtattcaa 254  Q
    |||||||||||||||| |  ||||||||| ||||||||  |||||| ||| ||||||||  |||||||  | |||||||||||||| |  | ||||||||    
T  6902647 attcaattaggattttaatgattttttaaagagtccaacaaaatctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtattcaa 6902548  T
Q  255 aactctacggattttaatggatt 277  Q
    || | ||  ||||| ||||||||    
T  6902547 aaatgtattgatttcaatggatt 6902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 40410972 - 40411021
Alignment:
Q  409 tttcttccaaattcttttctatt---ctgtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||    
T  40410972 tttcttccaaattcttttctattctactgtaacaatgacaggttatatat 40411021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 8584005 - 8583729
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||  |||| ||||||||| |||||||||||||||    
T  8584005 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaacgagtccaatgaaattcagtggtattcaattaagattttgcataact 8583906  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||||    
T  8583905 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtgagattgtttagtgtaaaatgtacctactaac 8583806  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8583805 aatctcacacctagccttgagacttttctatctccaacacatagccttgagattttgtaatactcttccaaattcat 8583729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 146 - 394
Target Start/End: Complemental strand, 42218431 - 42218170
Alignment:
Q  146 tcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttact 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||    
T  42218431 tcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataacttaaaaattgtctact 42218332  T
Q  246 agtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaatctcacacctagt 332  Q
      ||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||||||||||||||||||     
T  42218331 gatattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagc 42218232  T
Q  333 cttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  42218231 cttgagacttttctatctcctacacatagccttgagattttgtaatattcttccaaattcat 42218170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 8880528 - 8880762
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  8880528 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 8880627  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |             |||||||||||||||||||||||||    
T  8880628 taaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtgagattgtttagtgtaaaatgtacctactaac 8880727  T
Q  318 aatctcacacctagtcttgagacttttctgtctcc 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  8880728 aatctcacacctagccttgagacttttctgtctcc 8880762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 131 - 392
Target Start/End: Complemental strand, 3435957 - 3435689
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  3435957 aggaatgtaaaacaatcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaattcagtggtattcaattgagattttgcataact 3435858  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||             |||||||||||||||||||||||||    
T  3435857 taaaaattgtgtgctggtattcaaaactctacggattttaatggattgttgtgagtaatagattttgtgagattgtttagtgtaaaatgtacctactaac 3435758  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||| |||||||||||||| |||      ||||||||||||||||||||||||||||||||||||    
T  3435757 aatctcacacctagccttgagacttttctatct------catagccttgagattttgtaatactcttccaaattc 3435689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 131 - 391
Target Start/End: Original strand, 44929961 - 44930232
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||||  |||| |||||||||||||||||||||||||    
T  44929961 aggaatataaaatattcttgtggtattcaattaggattttcaagattttttaatgag--caatgaaattcagtggtattcaattgagattttgcataact 44930058  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| |||             |||||||||||||||||||||||||    
T  44930059 taaaaattgtctacgggtattcaaaactctacggattttaatggattgttgtgagtaaaggattttgtgagattgtttagtgtaaaatgtacctactaac 44930158  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaatt 391  Q
    |||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  44930159 aatctcacacctagccttgagatttttctatctcccacacatagccttgagattttgtaatactcttccaaatt 44930232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 52109490 - 52109744
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  52109490 aggaatgtaaaacattcttgtggtattcaattaggattttcatgattttttaatgagtccaatgaaatccaatggtattcaattgagattttgcataact 52109589  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||    
T  52109590 taaaaattgtataccgatattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttaatgtaaaatgtacctactaac 52109689  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||    
T  52109690 aatcccacacctagccttgagacttttctgtctcccacacataaccttgagattt 52109744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 25935871 - 25936127
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  25935871 aggaatgtaaaacattcttgtgatattcaattaggattttcaaaattttttaatgagtccaatgaaatctagtagtattcaattgagattttgcataact 25935970  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||             |||||||||||||| ||||| ||||    
T  25935971 taaaaattgtctactagtattcaaaactcatcgaattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgaacctattaac 25936070  T
Q  318 aatctcacacctagtcttgagacttttc--tgtctcctacacatagccttgagatttt 373  Q
    ||||||||| |||| |||||||||||||  ||||||| |||||||  |||||||||||    
T  25936071 aatctcaca-ctagccttgagacttttctgtgtctcccacacataatcttgagatttt 25936127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 369
Target Start/End: Original strand, 45332750 - 45333001
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| || | ||||||||||||||||| || ||||    
T  45332750 aggaatctaaaacattcttgtggtattcaattaggattttcaggattttttaatgagtccaataaaatccagaggtattcaattgagattttacacaact 45332849  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| ||||||||||||||||||||||||||||||             |||||||||||||||| |||| |||    
T  45332850 taaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaactttttagtgtaaaatgtatctaccaac 45332949  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgaga 369  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  45332950 aatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 45333001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 369
Target Start/End: Original strand, 45340440 - 45340691
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| || | ||||||||||||||||| || ||||    
T  45340440 aggaatctaaaacattcttgtggtattcaattaggattttcagaattttttaatgagtccaataaaatccagaggtattcaattgagattttacacaact 45340539  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| ||||||||||||||||||||||||||||||             |||||||||||||||| |||| |||    
T  45340540 taaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaactttttagtgtaaaatgtatctaccaac 45340639  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgaga 369  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  45340640 aatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 45340691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 40143860 - 40144098
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||||||| |||||||| ||||  || | |||||||||||||||||||| ||||    
T  40143860 aggaatctaaaacattcttgtggtattcaattaggattttcatgattttttaataagtccaataaaattcagaggtattcaattgagattttgcacaact 40143959  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggatttagtgtaaaatgtacctactaacaatctcacaccta 330  Q
    |||||||||| || | |||||||||| | || | |||||||||||||||||||||   |   ||||||||||||||||||||||||||||||||||| ||    
T  40143960 taaaaattgtctattggtattcaaaattgtaagaattttaatggattgttgtgagactt---tttagtgtaaaatgtacctactaacaatctcacactta 40144056  T
Q  331 gtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
      |||||||||||| ||||||| |||||||||||||||||||    
T  40144057 accttgagacttttttgtctcccacacatagccttgagattt 40144098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 131 - 367
Target Start/End: Original strand, 47685228 - 47685477
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||||||||  ||||    
T  47685228 aggaatctaaaacatttttgtggtattcaattaggattttcaagattttttaatgagtccaataaaattcagtggtattcaattgagattttgctcaact 47685327  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||| ||             |||||||||||||||||||||||||    
T  47685328 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatagattttgcgagactttttagtgtaaaatgtacctactaac 47685427  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttga 367  Q
    |||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  47685428 aatctcacacctaaacttgagacttttttgtctcccacacatagccttga 47685477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 138 - 369
Target Start/End: Original strand, 42720810 - 42721055
Alignment:
Q  138 taaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaat 237  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| || | ||||||||||||||||| || |||||||||||    
T  42720810 taaaacattcttgtggtattcaattaggattttcagaattttttaatgagtccaataaaatccagaggtattcaattgagattttacacaacttaaaaat 42720909  T
Q  238 tgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaatctca 324  Q
    ||| || | |||||||||| |||| |||||||||||| |||||||||||||||||             |||||||||||||||| |||| ||||||||||    
T  42720910 tgtctattggtattcaaaattctaaggattttaatgggttgttgtgagtaatggattttgtgagactttttagtgtaaaatgtatctaccaacaatctca 42721009  T
Q  325 cacctagtcttgagac-ttttctgtctcctacacatagccttgaga 369  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||||||    
T  42721010 cacctagccttgagactttttttgtctcccacacatagccttgaga 42721055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 26336161 - 26336407
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||||||||||||||||||||||||||         ||||||||||||||| ||||| || | ||||||||||||||||| || ||||    
T  26336161 aggaatctaaaacattcttgtggtattcaattaggattt---------tttaatgagtccaataaaatccagaggtattcaattgagattttacacaact 26336251  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    ||||||||||||| | |||||||||| |||| ||||||||||||||| ||||||||||||||             |||||||||||||||| |||| |||    
T  26336252 taaaaattgtttattggtattcaaaattctaaggattttaatggattattgtgagtaatggattttgtgagactttttagtgtaaaatgtatctaccaac 26336351  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  26336352 aatctcacacctagccttgagacttttttgtctcccacacatagccttgagatttt 26336407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 54509798 - 54510050
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| ||||||||| |||||||||||||||||||  ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  54509798 aggaatctaaaatattcttgtgatattcaattaggattttcataattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaact 54509897  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || |||||||||||||||||| ||   ||||||             |||||||||||||||||||||||||    
T  54509898 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttatg---aatggattttgtgagactttttagtgtaaaatgtacctactaac 54509994  T
Q  318 aatctcacacctagtcttgagac-ttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||  |||||| | |||| ||||||| ||||||||| |||||||||    
T  54509995 aatctcacacctaaccttgaggctttttttgtctcccacacatagctttgagattt 54510050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 224 - 392
Target Start/End: Original strand, 7820239 - 7820405
Alignment:
Q  224 cataacttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggatttagtgtaaaatgtacctactaacaatctc 323  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||  || | |||||||||||||| ||||||||||||||||    
T  7820239 cataacttaaaaattgtctactagtattcaaaactctacggattttaatgaatttttatgag--attg-tttagtgtaaaatgcacctactaacaatctc 7820335  T
Q  324 acacctagtcttgagacttttctgtctcctacacatag-ccttgagattttgtaatactcttccaaattc 392  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||    
T  7820336 acacctagcctggagacttttctgtctcccacacatagcccttgggattttgtattactcttccaaattc 7820405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 153 - 352
Target Start/End: Complemental strand, 33450157 - 33449945
Alignment:
Q  153 gtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagtattc 252  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||   ||| |||||||||||||||||||| |||||||||||||| || | ||||||    
T  33450157 gtattcaattaggattttcaagattttttaatgagtccaataaaattcggtggtattcaattgagattttgcacaacttaaaaattgtctattggtattc 33450058  T
Q  253 aaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaatctcacacctagtcttgaga 339  Q
    |||| |||||||||||||||||||| ||||||||||||||             |||||||||||||||| |||||||||||||||||| ||| ||  | |    
T  33450057 aaaattctacggattttaatggattattgtgagtaatggattttgtgagacattttagtgtaaaatgtatctactaacaatctcacacatagcctcaaca 33449958  T
Q  340 cttttctgtctcc 352  Q
    |||||||||||||    
T  33449957 cttttctgtctcc 33449945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 7820180 - 7820240
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtcca 191  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7820180 aggaatctaaaacatttttgtggtattcaattaggattttcaagattttttaatgagtcca 7820240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 42218151 - 42218102
Alignment:
Q  409 tttcttccaaattcttttctatt---ctgtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  42218151 tttcttccaaattcttttctattctactgtaacaatggcagattatatat 42218102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 5117064 - 5117154
Alignment:
Q  150 gtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgt 240  Q
    |||||||||||||| ||||||||  | ||||||| |||| ||||||||||  ||| ||||| ||  ||||||| |  ||||||||||||||    
T  5117064 gtggtattcaattaagattttcaggactttttaaagagttcaatgaaatccggtggtattccatcaagatttttcgcaacttaaaaattgt 5117154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 3435681 - 3435631
Alignment:
Q  408 ttttcttccaaattcttttctattct---gtaacaatggcaggttatatat 455  Q
    |||||||||||||||| |||| ||||   ||||||||||||||||||||||    
T  3435681 ttttcttccaaattctcttctgttctactgtaacaatggcaggttatatat 3435631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 391
Target Start/End: Original strand, 56397742 - 56397770
Alignment:
Q  363 cttgagattttgtaatactcttccaaatt 391  Q
    |||||||||||||||||||||||||||||    
T  56397742 cttgagattttgtaatactcttccaaatt 56397770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 455
Target Start/End: Original strand, 52705477 - 52705817
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  52705477 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 52705576  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             ||| ||||||||||||| |||||||    
T  52705577 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttggtgtaaaatgtacttactaac 52705676  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcatannnnnnnnnnacttttcttcca 417  Q
    |||||||| ||||| ||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||           || |||||||||    
T  52705677 aatctcacgcctagccttaagacttttctatctcccacacatagccttgagatattgtaatactcttccaaattcattttttttttctacgtttcttcca 52705776  T
Q  418 aattcttttc---tattctgtaacaatggcaggttatatat 455  Q
    ||||||||||   ||| ||||||||||||||| ||||||||    
T  52705777 aattcttttctgttatactgtaacaatggcagattatatat 52705817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 131 - 391
Target Start/End: Complemental strand, 26882826 - 26882553
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26882826 aggaatgtaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 26882727  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||||||  |||||||    
T  26882726 taaaaattgtctactggtattcaaaactctacagattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatatactaac 26882627  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaatt 391  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||    
T  26882626 aatctcacacctagccttgagacttttctatcacccacacatagccttgagattttgtaatactcttccaaatt 26882553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 131 - 392
Target Start/End: Original strand, 45318544 - 45318818
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  45318544 aggaatgtaaaacattattgtggtattcaattaggattttcaagattttctaatgaatccaatgaaatccagtggtattcaattgagattttgcataact 45318643  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  45318644 taaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtacctactaac 45318743  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattc 392  Q
    |||||||||||||  |||||||||||| | || || |||||||||||||||||||||||||||||||||||||||    
T  45318744 aatctcacacctaaccttgagacttttttatcacccacacatagccttgagattttgtaatactcttccaaattc 45318818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 1928404 - 1928149
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||| |||||||||| ||||    
T  1928404 aggaatctaaaacattcttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatccagtggtattcaattcagattttgcacaact 1928305  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |||| |||||||||||||||||| |||||||||||             |||||||||||||| | ||||||||    
T  1928304 taaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttagtgtaaaatgcatctactaac 1928205  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||| |||||||||||    
T  1928204 aatctcacacctagccttgtgacttttttgtctcccacacatagtcttgagatttt 1928149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 36402331 - 36402585
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  36402331 aggaatctaaaacattcttgtggtattcaattaggattttcaggattttttaatgagtccaataaaatccagtggtattcaattgagattttgcacaact 36402430  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  36402431 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatgtacctactaac 36402530  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    ||||||||| |||  |||||||||||| ||||||| ||||||| | |||||||||    
T  36402531 aatctcacatctaaccttgagacttttttgtctcccacacataactttgagattt 36402585  T

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Target: chr1; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 131 - 369
Target Start/End: Original strand, 29208839 - 29209090
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||||| || | ||||||||||||||||| || ||||    
T  29208839 aggaatctaaaacattctggtggtattcaattaggattttcaggattttttaatgagtccaataaaatccagaggtattcaattgagattttacacaact 29208938  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||  |||| ||||||||||||||||||||||||||||||             |||||||||| || || |||| |||    
T  29208939 taaaaattgtctattggtattcaaagttctaaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaacatatatctaccaac 29209038  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgaga 369  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  29209039 aatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 29209090  T

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Target: chr1; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 33243310 - 33243060
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||| | ||||    
T  33243310 aggaatctaaaatattcttgtggtattcaattaggattttcaagattttttaatgagtacaataaaatccagtggtattcaattgagattttgtacaact 33243211  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||             |||| |||||| |||||||||||||    
T  33243210 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaaactttttaatgtaaattgtacctactaac 33243111  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||     ||||||||| ||||||| |||||||||||||||||||    
T  33243110 aatctcacaccta----agagacttttttgtctcccacacatagccttgagattt 33243060  T

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Target: chr1; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 33263483 - 33263233
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||| | ||||    
T  33263483 aggaatctaaaatattcttgtggtattcaattaggattttcaagattttttaatgagtacaataaaatccagtggtattcaattgagattttgtacaact 33263384  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||             |||| |||||| |||||||||||||    
T  33263383 taaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaaactttttaatgtaaattgtacctactaac 33263284  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||     ||||||||| ||||||| |||||||||||||||||||    
T  33263283 aatctcacaccta----agagacttttttgtctcccacacatagccttgagattt 33263233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 10896884 - 10897138
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| |||| |||||||||||||||||||  ||||    
T  10896884 aggaatctaaaacattcttgtggtattcaattaggattttcaggattttttaatgagtctaataaaatccagtggtattcaattgagattttgcccaact 10896983  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| || | |||||||||| |    |||||||||||||||||| |||||||||||             |||| ||||||||||||||||||||    
T  10896984 taaaaattgtctattggtattcaaaattggtaggattttaatggattgttatgagtaatggattttgtgaaacattttaatgtaaaatgtacctactaac 10897083  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattt 372  Q
    |||||||||||||  ||||| |||||| ||||||  ||||||||| |||||||||    
T  10897084 aatctcacacctaaccttgacacttttttgtctctcacacatagctttgagattt 10897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 45534900 - 45534993
Alignment:
Q  141 aacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaa 234  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||  || | |||||||||||||||||||||||||||||    
T  45534900 aacattcttgtggtatttaattaggatttttaagattttttaatgagtccaatgaaattcagcggtattcaattgagattttgcataacttaaa 45534993  T

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Target: chr1; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 9831383 - 9831499
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| |||||||||||||| |||||||||||||||||         ||||||||||||||| ||||| |||| |||||||||||||||||||| ||||    
T  9831383 aggaatctaaaacattcttgtagtattcaattaggattt---------tttaatgagtccaataaaatccagtggtattcaattgagattttgcacaact 9831473  T
Q  231 taaaaattgtttactagtattcaaaa 256  Q
    || ||||||| || | ||||||||||    
T  9831474 tacaaattgtctattggtattcaaaa 9831499  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 45534991 - 45535089
Alignment:
Q  254 aaactctacggattttaatggattgttgtgagtaatggattt-------------agtgtaaaatgtacctactaacaatctcacacctagtcttgaga 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| ||| |||||||    
T  45534991 aaactctactgattttaatggattgttgtgagtaatggattttttgagattgttgagtgtaaaatgtacctactaacaatctcacacgtagccttgaga 45535089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 9191234 - 9191361
Alignment:
Q  150 gtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagta 249  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||  |||||| ||| ||||||||  ||||||   | |||||||||||||| |  | |||    
T  9191234 gtggtattcaattaggattttaatgattttttaaagagtccaacaaaatctggtggtattcaatcaagatttattacaacttaaaaattgtctcttggta 9191333  T
Q  250 ttcaaaactctacggattttaatggatt 277  Q
    ||||||| | ||  ||||| ||||||||    
T  9191334 ttcaaaaatgtattgatttcaatggatt 9191361  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 9831782 - 9831814
Alignment:
Q  263 ggattttaatggattgttgtgagtaatggattt 295  Q
    |||||||||||||||||||||||||||||||||    
T  9831782 ggattttaatggattgttgtgagtaatggattt 9831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 45318844 - 45318893
Alignment:
Q  409 tttcttccaaattcttttctatt---ctgtaacaatggcaggttatatat 455  Q
    |||||||||||||||||||| ||   ||||||||||||||||||||||||    
T  45318844 tttcttccaaattcttttctgttatactgtaacaatggcaggttatatat 45318893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 9831825 - 9831862
Alignment:
Q  293 tttagtgtaaaatgtacctactaacaatctcacaccta 330  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  9831825 tttagtgtaaaatatacttactaacaatctcacaccta 9831862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 81782 - 81506
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  81782 aggaatctaaaacattcttgtgctattcaattaggattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 81683  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||||||||    
T  81682 taaaaattgtctcctggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatctactaac 81583  T
Q  318 aatctcacacctagtcttgagacttttctgtctcctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |||||||||||||  |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  81582 aatctcacacctaaccttgagacttttctatctctcacacatagccttgagattttgtaatactcttccaaattcat 81506  T

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Target: scaffold0153 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 164 - 394
Target Start/End: Complemental strand, 34781 - 34538
Alignment:
Q  164 ggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaaaaattgtttactagtattcaaaactctacg 263  Q
    |||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||    
T  34781 ggattttcaagattttttaatgagtccaatgaaatacagtggtattcaattgagattttgcataacttaaaaattgtctgctgatattcaaaactctacg 34682  T
Q  264 gattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaacaatctcacacctagtcttgagacttttctgtct 350  Q
    |||||||||||||||||||||||||||||             |||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||    
T  34681 gattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttctatct 34582  T
Q  351 cctacacatagccttgagattttgtaatactcttccaaattcat 394  Q
    |  |||||||||||||||||||||||||||||||||||||||||    
T  34581 ctcacacatagccttgagattttgtaatactcttccaaattcat 34538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 21413 - 21192
Alignment:
Q  131 aggaatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataact 230  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  21413 aggaatgtaaaacattcttgtggtatgcaattagaattttcaagattttttaatgagtccaatgaaatccagtggtattcaattgagattttgcataact 21314  T
Q  231 taaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatgga-------------tttagtgtaaaatgtacctactaac 317  Q
    |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  21313 taaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatgagattgtttagtgtaaaatgtacctactaac 21214  T
Q  318 aatctcacacctagtcttgaga 339  Q
    |||||||||||||  |||||||    
T  21213 aatctcacacctaaccttgaga 21192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 391
Target Start/End: Complemental strand, 21199 - 21170
Alignment:
Q  362 ccttgagattttgtaatactcttccaaatt 391  Q
    ||||||||||||||||||||||||||||||    
T  21199 ccttgagattttgtaatactcttccaaatt 21170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 134 - 373
Target Start/End: Complemental strand, 16539 - 16303
Alignment:
Q  134 aatgtaaaacattcttgtggtattcaattaggattttcaatattttttaatgagtccaatgaaatctagtgatattcaattgagattttgcataacttaa 233  Q
    ||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  16539 aatgtaaaacatttttgtggtattcaattagtattttcaagaatttttaatgagtccaataaaatccagtggtattcaattgagattttgcataacttaa 16440  T
Q  234 aaattgtttactagtattcaaaactctacg-gattttaatggattgttgtgagtaatggatttagtgtaaaatgtacctactaacaatctcacacc--ta 330  Q
    ||||||| || |||||||||||| |||| | ||   ||||||||| ||||||| | ||  ||||||||||| ||||||||||||||||||||||||  ||    
T  16439 aaattgtctattagtattcaaaattctatgtga--gtaatggatt-ttgtgag-attg--tttagtgtaaagtgtacctactaacaatctcacacctata 16346  T
Q  331 gtcttgagacttttctgtctcctacacatagccttgagatttt 373  Q
      |||||||||||| ||||||  |||||||||||||| |||||    
T  16345 accttgagacttttatgtctctcacacatagccttgaaatttt 16303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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