View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_27 (Length: 467)
Name: NF7550_low_27
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 3621301 - 3621741
Alignment:
| Q |
19 |
agaacgtgttggagcagaggtagtggagtgtgcatgtgtaattgaattaccggaactgaaggtatgtgtattttgtatttctgtataatgaaaatgactt |
118 |
Q |
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| T |
3621301 |
agaacgtgttggagcagaggtagtggagtgtgcatgtgtaattgaattaccggaactgaaggtatgtgtattttgtatttctgtttaatgaaaatgactt |
3621400 |
T |
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| Q |
119 |
tgtttgttgctgtctagcacattaaaaactgtttctgtgacattgtatataagttttagccaaatggttcatgtgaatacgtacgtacatatgtgacagg |
218 |
Q |
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| T |
3621401 |
tgtttgttgctgtctagcacattaaaaactgtttctgtgacattttatataagttttagccaaatgattcatgtgaatacgtacgtacatatgtgacagg |
3621500 |
T |
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| Q |
219 |
gtcgtgaacgtttgaatgggaagccgttgtacgtgttggtggaatactttgatatatgagctgctgctcgtgaatatggttcg-tcccatacaatcaaat |
317 |
Q |
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| T |
3621501 |
gtcgtgaacgtttgaatgggaagccgttgtacgtgttggtggaatactttgatatatgagctgctgctcgtgaatatggttcgttcccatacaatcaaat |
3621600 |
T |
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| Q |
318 |
tatggatttggaagatgtcatttagtggacactttcacattttgagtcccatctaattaattagcttgtagtatgatcaatcaaatcaaattaatgaatt |
417 |
Q |
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| T |
3621601 |
tatggatttgggagatgtcatttagtggacactttcacattttgagtcccatctaattaattagcttgtagtatgatcaatcaaatcaaattaatgaatt |
3621700 |
T |
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| Q |
418 |
tgtatgacccaccctatgggtctctctcgtctcatctctgc |
458 |
Q |
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| T |
3621701 |
tgtatgacccaccctttgggtctctctcgtctcatctctgc |
3621741 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 41960001 - 41959939
Alignment:
| Q |
22 |
acgtgttggagcagaggtagtggagtgtgcatgtgtaattgaattaccggaactgaaggtatg |
84 |
Q |
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| T |
41960001 |
acgtgttggagcagagattgttgagtgtgcatgtgtaattgaattaccagaattaaaggtatg |
41959939 |
T |
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