View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_28 (Length: 459)
Name: NF7550_low_28
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 6838005 - 6838450
Alignment:
| Q |
1 |
gtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactc |
100 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838005 |
gtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactc |
6838104 |
T |
|
| Q |
101 |
aagagcaaggatatgttgggatcaaaggttaaatactggctttcagctatcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838105 |
aagagcaaggatatgttgggatcaaaggttaaatacttgctttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaat |
6838204 |
T |
|
| Q |
201 |
atcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtcatgaaggtgtagttagcttgcaatcctcaaaaagatcgccaacttc |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| | |||||| ||||||||||||||||| |||||| | |
|
|
| T |
6838205 |
atcttgcagagcaaaagggtgatttgggattgacacaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgc |
6838304 |
T |
|
| Q |
301 |
atccttggtgaataaatctgacatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcaaacaaggacaatggcaaccaagtatca |
400 |
Q |
| |
|
||| |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6838305 |
atctttggtggatgaatcttccatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcttacaaggacaatggcaaccaagtatca |
6838404 |
T |
|
| Q |
401 |
actatcagcatagttggtttgggtgggatgggaaagaccacccttg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838405 |
actatcagcatagttggtttgggtgggatgggaaagaccacccttg |
6838450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 8472468 - 8472041
Alignment:
| Q |
1 |
gtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaatgtaaaactc |
100 |
Q |
| |
|
|||||| |||||| ||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
8472468 |
gtaccagaaccaaaatgttaagaattggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgatacaagtgtacaacga |
8472369 |
T |
|
| Q |
101 |
aagagcaaggatatgttgggatcaaaggttaaatactggctttcagctatcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaat |
200 |
Q |
| |
|
|||||||||| || || ||| ||||||||| ||| |||| ||||||||||||||||| ||| | ||||| | |||||| |
|
|
| T |
8472368 |
aagagcaagg------------------ttcaacacttcctttcagctttcattaatcgatttgaatctaggatcagagattcgctagatgaactaaaac |
8472287 |
T |
|
| Q |
201 |
atcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtcatgaaggtgtagttagcttgcaatcctcaaaaagatcgccaacttc |
300 |
Q |
| |
|
|||||| || |||||||||| |||||||| || || ||||||| | ||||| ||||||||| ||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
8472286 |
ttcttgccgatcaaaaggatgtgttgggattaacacagagaagtttccctagttatgaaggtgcagttagcctgcaatcctcgaaaagatcgccaactgc |
8472187 |
T |
|
| Q |
301 |
atccttggtgaataaatctgacatacgtggtagagaaggtgaaaaagaagaaataattaactatttgctgtcaaacaaggacaatggcaaccaagtatca |
400 |
Q |
| |
|
||| || ||| || ||||| ||||||||||||||||||||| ||||||||| |||| || |||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
8472186 |
atctttagtggatgaatcttccatacgtggtagagaaggtgacaaagaagaattaatcaagtatttgctttcttacaacgacaatggcaaccaagtatca |
8472087 |
T |
|
| Q |
401 |
actatcagcatagttggtttgggtgggatgggaaagaccacccttg |
446 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
8472086 |
actatcagcatagtgggtttgcctgggatggggaagaccacccttg |
8472041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 5250954 - 5250875
Alignment:
| Q |
141 |
tttcagctatcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggat |
220 |
Q |
| |
|
||||| || |||| |||||||||||||||||||| ||||| ||||||| |||||| ||| ||||||| ||||||||||| |
|
|
| T |
5250954 |
tttcatctttcactaatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggat |
5250875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 6448040 - 6448106
Alignment:
| Q |
155 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||| | |||||||||||||||||||||| |
|
|
| T |
6448040 |
aatccatttgaatctaggatcaaagacttgctaaagaatctagattatcttgcagagcaaaaggatg |
6448106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 369
Target Start/End: Original strand, 8568209 - 8568420
Alignment:
| Q |
155 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtc |
254 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||| || |||||||| ||||| | |||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
8568209 |
aatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtactag-- |
8568306 |
T |
|
| Q |
255 |
atgaaggtgtagttagcttgcaatcctcaaaaagatcgccaacttcatccttggtgaataaatctgacatacgtggtagagaaggtgaaaaagaagaaat |
354 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||| ||||||| | || |||||| || ||||| |||| ||||||||| | ||| ||| | |||| |
|
|
| T |
8568307 |
-tgaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaat |
8568405 |
T |
|
| Q |
355 |
aattaactatttgct |
369 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
8568406 |
aatcaattatttgct |
8568420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 4388195 - 4388260
Alignment:
| Q |
155 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggat |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| || ||| |||||| ||||||||||| |
|
|
| T |
4388195 |
aatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaagcaaaaggat |
4388260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 5268832 - 5268765
Alignment:
| Q |
150 |
tcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaag |
217 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||| |||||| ||| ||||||| | |||||| |
|
|
| T |
5268832 |
tcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaag |
5268765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 163 - 446
Target Start/End: Original strand, 6572561 - 6572847
Alignment:
| Q |
163 |
tgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaag---aagttgcactagtcatgaa |
259 |
Q |
| |
|
|||| |||||||||| || ||||| | ||| ||||||| ||| | |||||||||||||| ||||||||||| || |||||||| |||| |||| |
|
|
| T |
6572561 |
tgaacctaggatcaatgatttgctcgacaaactaaaatttctcgtagagcaaaaggatgtgttgggattgacaggtagtggaagttgcagtagttttgaa |
6572660 |
T |
|
| Q |
260 |
ggtgtagttagcttgcaatcctcaaaaagatcgccaacttcatccttggtgaataaatctgacatacgtggtagagaaggtgaaaaagaagaaataatta |
359 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||||| ||||| |||||||||||||| | |
|
|
| T |
6572661 |
ggtgcagttagccagcaatcctcaaaaagatcgccaactgcatctctggtggataaatcttgcatatatggtagagagggtgagaaagaagaaataatca |
6572760 |
T |
|
| Q |
360 |
actatttgctgtcaaacaaggacaatggcaaccaagtatcaactatcagcatagttggtttgggtgggatgggaaagaccacccttg |
446 |
Q |
| |
|
|| ||||||| ||| |||| ||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6572761 |
accatttgctttcatacaaagacaacgacaaccaagtatcaataatcagcatagtgggtttgggtgggatggggaagaccacccttg |
6572847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 6572453 - 6572506
Alignment:
| Q |
37 |
tctaaaacatgaggtatatgaagtagatcaattgttggatgagattgatacaaa |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6572453 |
tctaaaacatgaggtatatgaagtagatcaattgttggatgagattgctacaaa |
6572506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University