View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_3 (Length: 764)

Name: NF7550_low_3
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_3
NF7550_low_3
[»] chr1 (9 HSPs)
chr1 (1-513)||(4160616-4161130)
chr1 (537-758)||(4160377-4160598)
chr1 (632-758)||(28496106-28496232)
chr1 (631-758)||(12774937-12775064)
chr1 (632-758)||(12804511-12804637)
chr1 (632-758)||(36989340-36989466)
chr1 (631-758)||(42287117-42287244)
chr1 (631-758)||(50788818-50788945)
chr1 (202-244)||(50786107-50786149)
[»] chr8 (2 HSPs)
chr8 (631-758)||(5788722-5788849)
chr8 (646-758)||(33186735-33186847)
[»] chr4 (2 HSPs)
chr4 (631-758)||(30518147-30518274)
chr4 (650-758)||(22085524-22085632)
[»] chr2 (4 HSPs)
chr2 (632-758)||(40040789-40040915)
chr2 (632-758)||(42898298-42898424)
chr2 (630-758)||(38895855-38895983)
chr2 (202-236)||(42898918-42898952)
[»] chr7 (1 HSPs)
chr7 (631-756)||(40749392-40749517)


Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 4161130 - 4160616
Alignment:
Q  1 ggaaacaaagttgtagggttagggttttgaaaatggttcaaatgggctgggagtaaccataatggaatttctggtcttaaattgaagtcttgttcctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4161130 ggaaacaaagttgtagggttagggttttgaaaatggttcaaatgggttgggagtaaccataatggaatttctggtcttaaattgaagtcttgttcctttt 4161031  T
Q  101 ttagtgatagtggttgaaaaccatggctttgatgaaattgcgagtgagaagagaatagagggttcactgctgaaattgatgcactctcttgtgataaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4161030 ttagtgatagtggttgaaaaccatggctttgatgaaattgggagtgagaagagaatagagggttcactgctgaaattgatgcactctcctgtgataaaac 4160931  T
Q  201 gtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatatacatcatattattatttaattaatctcaaatatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160930 gtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatatacatcatattattatttaattaatctcaaatatt 4160831  T
Q  301 tattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcattatatttgaattcgagtactctc---aaactatt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  4160830 tattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcattatatttgaattcgagtactctcaataaactatt 4160731  T
Q  398 catcttagtttggataatgaaagattaccatatggacagttttgaatattgatttgtatgtcacattctatgaactaaaaatactgtttaagcacacttt 497  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4160730 catcttggtttggataatgaaagattaccatatggaccgttttgaatattgatttgtatgtcacattctatgaactaaaaatactgtttaagcacac-tt 4160632  T
Q  498 tttacctttttacgta 513  Q
    ||||||||||||||||    
T  4160631 tttacctttttacgta 4160616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 537 - 758
Target Start/End: Complemental strand, 4160598 - 4160377
Alignment:
Q  537 ttttggattttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 636  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160598 ttttggaatttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 4160499  T
Q  637 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160498 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 4160399  T
Q  737 tcacacttccacttcttctcac 758  Q
    ||||||||||||||||||||||    
T  4160398 tcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 632 - 758
Target Start/End: Original strand, 28496106 - 28496232
Alignment:
Q  632 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 731  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  732 atttctcacacttccacttcttctcac 758  Q
    |||| ||||| ||||||||||||||||    
T  28496206 atttttcacatttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 758
Target Start/End: Complemental strand, 12775064 - 12774937
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| |||| ||||||||||||||||| || ||||| |||||    ||||||    
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaa 12774965  T
Q  731 catttctcacacttccacttcttctcac 758  Q
    || || ||||||||||| || |||||||    
T  12774964 cacttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 632 - 758
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  632 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 731  Q
    |||||||||||||| || |||||||||||  |||||||  |||| |||||| | || ||||||||||||||||| || ||||| ||||||   |||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  732 atttctcacacttccacttcttctcac 758  Q
    | || ||||| |||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 632 - 758
Target Start/End: Complemental strand, 36989466 - 36989340
Alignment:
Q  632 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 731  Q
    ||||| || |||| ||||||||||||||| || || ||  | || ||||| ||||||||||||||||||||||| || ||||| ||||||   |||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  732 atttctcacacttccacttcttctcac 758  Q
    | || ||||| |||||||| |||||||    
T  36989366 acttatcacatttccactttttctcac 36989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 758
Target Start/End: Complemental strand, 42287244 - 42287117
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    |||||| ||||||||||| ||||| |||||  |||| ||| |||| |||||| | || ||||| |||||||| || || ||||| ||||||   || ||     
T  42287244 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgag 42287145  T
Q  731 catttctcacacttccacttcttctcac 758  Q
    ||||| ||||| ||||||||||||||||    
T  42287144 catttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 758
Target Start/End: Original strand, 50788818 - 50788945
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    |||||| |||||||| || |||||||||||| |||| ||| | ||||||||| | || ||||| || |||||||| || ||||| |||||    |||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  731 catttctcacacttccacttcttctcac 758  Q
    || || ||||||||||| ||||||||||    
T  50788918 cacttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 50786107 - 50786149
Alignment:
Q  202 tcacagaaggctctgtgagtgatgaaactgtcccttctgcaat 244  Q
    |||||||||||||||||||| ||||||||||| || |||||||    
T  50786107 tcacagaaggctctgtgagttatgaaactgtctctcctgcaat 50786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 631 - 758
Target Start/End: Original strand, 5788722 - 5788849
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    ||||||||||||||||||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||||||| || ||||| ||||||   || |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  731 catttctcacacttccacttcttctcac 758  Q
    || || ||||| ||||||||||||||||    
T  5788822 cacttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 646 - 758
Target Start/End: Complemental strand, 33186847 - 33186735
Alignment:
Q  646 ggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttc 745  Q
    ||||||||| ||||| ||||||||| |||  ||||||| ||| || |||||||||||||| || ||||| ||||||   ||||||||||||||||| |||    
T  33186847 ggttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttc 33186748  T
Q  746 cacttcttctcac 758  Q
    ||||| |||||||    
T  33186747 cactttttctcac 33186735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 631 - 758
Target Start/End: Original strand, 30518147 - 30518274
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    ||||||||| ||||  |||||||||||||| || || ||| |||| |||||  |||| || |||||||||||||| |||||||| ||||| ||||| ||     
T  30518147 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 30518246  T
Q  731 catttctcacacttccacttcttctcac 758  Q
    || |||||||||||||||||||| ||||    
T  30518247 cacttctcacacttccacttcttttcac 30518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 758
Target Start/End: Original strand, 22085524 - 22085632
Alignment:
Q  650 ccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccact 749  Q
    ||||| ||||| || |||||| |||| |||||||| |||  ||||||||||||||| || ||||||||||||   || ||||| || |||||||||||||    
T  22085524 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 22085623  T
Q  750 tcttctcac 758  Q
    |||||||||    
T  22085624 tcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 632 - 758
Target Start/End: Complemental strand, 40040915 - 40040789
Alignment:
Q  632 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 731  Q
    ||||| ||||| || || ||||| |||||  | |||||||||||||||||||| ||   |||||| |||||||| || ||||||||||||   |||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  732 atttctcacacttccacttcttctcac 758  Q
    | || ||||||||||||||||||||||    
T  40040815 acttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 632 - 758
Target Start/End: Complemental strand, 42898424 - 42898298
Alignment:
Q  632 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 731  Q
    |||||||||||||||||||||||||||||  | || ||| | ||||||||  ||||||| ||||||||||| || || |||||||||||    ||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  732 atttctcacacttccacttcttctcac 758  Q
    | || ||||| ||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctcac 42898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 758
Target Start/End: Original strand, 38895855 - 38895983
Alignment:
Q  630 cttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttaga 729  Q
    |||||||||| ||||  || ||||| ||||| || || ||| |||| |||||| | || || || |||||||||||||| ||||| |||||   ||| ||    
T  38895855 cttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttga 38895954  T
Q  730 acatttctcacacttccacttcttctcac 758  Q
     || |||||||||||||||||||||||||    
T  38895955 gcacttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 42898952 - 42898918
Alignment:
Q  202 tcacagaaggctctgtgagtgatgaaactgtccct 236  Q
    |||||||||||||||||||| ||||||||||||||    
T  42898952 tcacagaaggctctgtgagttatgaaactgtccct 42898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 756
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  631 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 730  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||| |||||| |||| |  |||||||||||||| || || |||||||||   || |||    
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  731 catttctcacacttccacttcttctc 756  Q
    || || ||||||||||| ||||||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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