View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_31 (Length: 441)
Name: NF7550_low_31
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 38125602 - 38125195
Alignment:
| Q |
15 |
gacatcagaggcctgacgaatagcaatggatgtaaattgtatgttcacctataagttaagcataaacaggattccgtcaatgcaccatccctatcatgat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38125602 |
gacatcagaggcctgacgaatagcaatggatgtaaattgtatgttcacctataagttaagcataaacagaattctgtcaatgcaccatccctatcatgat |
38125503 |
T |
|
| Q |
115 |
cacttagattgtgtagaaacatatnnnnnnnttcaatggacatgtctagagaaaatagacattttaatatttgaaattgtaatggtcggtcaattcaatc |
214 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38125502 |
cacttagattatgtagaaacatataaaaaatttcaatggacatgtctatagaaaatagacattttaatatttgaaattgtaatggtcggtcaattcaatc |
38125403 |
T |
|
| Q |
215 |
cctgaaatcgacaaatatcacttagactctttactcgacatgccgatgtaccttagcaccttccaaaagaggaactctgcagacagctgaatgcaaacac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38125402 |
cctgaaatcgacaaatatcacttagactctttactcgacatgccgatgtaccttagcaccttccaaaagaggaactctgcagacagctgaatgcaaacac |
38125303 |
T |
|
| Q |
315 |
tctttggtggcagtaattgttgatacatgttgcctttccatgcttccccaagcttctaataactttaactatcaaaaacaacaatacatcagtcaagaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38125302 |
tctttggtggcagtaattgttgatacatgttgcctttccatgcttccccaagcttctaataactttaactatcaaaaacaacaatacatcagtcaagaat |
38125203 |
T |
|
| Q |
415 |
attgaatt |
422 |
Q |
| |
|
|||||||| |
|
|
| T |
38125202 |
attgaatt |
38125195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 5539959 - 5540014
Alignment:
| Q |
167 |
aaatagacattttaatatttgaaattgtaatggtcggtcaattcaatccctgaaat |
222 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
5539959 |
aaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaat |
5540014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 5550861 - 5550806
Alignment:
| Q |
167 |
aaatagacattttaatatttgaaattgtaatggtcggtcaattcaatccctgaaat |
222 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| ||||||| ||||||| |||| |
|
|
| T |
5550861 |
aaatagacattttagtctttgaaattgtaagggtctgtcaatttaatccctcaaat |
5550806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 15801460 - 15801515
Alignment:
| Q |
167 |
aaatagacattttaatatttgaaattgtaatggtcggtcaattcaatccctgaaat |
222 |
Q |
| |
|
||||||| |||||| | ||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
15801460 |
aaatagatattttagtctttcaaattgtaacggtcggtcaattcaatccctcaaat |
15801515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University