View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_33 (Length: 440)
Name: NF7550_low_33
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 38467465 - 38467739
Alignment:
| Q |
1 |
attatagagtaccttttttgttgctttatccgcgtaagtcatacggaaattgcatataatgctatgttgtaagtaagagtctattgtgaatattcatgtc |
100 |
Q |
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| T |
38467465 |
attatagagtaccttttttgttgctttatccgcgtaagtcatatggaaattgcatataatgctatgttgtaagtaagagtctattgtgaatattcatgtc |
38467564 |
T |
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| Q |
101 |
tctcatatgaatgaatatcaatgattaaaatctcactttgctcaatgaaattgtaaggttgtatcaagttagtctaattcactttatcgaaactctaagt |
200 |
Q |
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| T |
38467565 |
tctcatatgaatgaatatcaatgattaaaatctcactttgctcaatgaaattgtaagggtgtgtcaagttagtctaattcactttatcgaaactctaagt |
38467664 |
T |
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| Q |
201 |
tagctcttgaaattgcaaaacattgtcaagtcgatctatctatttgctggtgttagttaacagagtaagcggtgt |
275 |
Q |
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| T |
38467665 |
tagttcttgaaattgcaaaacattgtcaagtcgatctatctatttgctggtgttagttaacagagtaagcggtgt |
38467739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 273 - 422
Target Start/End: Original strand, 38467779 - 38467928
Alignment:
| Q |
273 |
tgtgcacaaccaaatacttaacgtgcttcattagcgcccctaactcttttaactaacatggtgcaaaaatggtggttagaattatattattgacattaaa |
372 |
Q |
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| T |
38467779 |
tgtgcacaaccaaatacttagcgtgcttcattagcgcccctaactcttttaactaacatggtgcaaaattggtggttagaattatattattgacattaaa |
38467878 |
T |
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| Q |
373 |
gtaggtagtggatgttgaaccatctgcaattccttggttttccttacata |
422 |
Q |
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| T |
38467879 |
gtaggtagtggatgttgaaccatctgcaattccttggttttccttacata |
38467928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 38468266 - 38468405
Alignment:
| Q |
45 |
ggaaattgcatataatgctatgttgtaagtaagagtctattgtgaatattcatgtctctcatatgaatgaatatcaatgattaaaatctcactttgctca |
144 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38468266 |
ggaaattgcatataatattatgttgtaagtaagagtctattgtgaatattcatgtttctcatatgaatgaatatcaatgattaaaatctcaatttgctca |
38468365 |
T |
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| Q |
145 |
atgaaattgtaaggttgtatcaagttagtctaattcactt |
184 |
Q |
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| T |
38468366 |
atgaaattgtgagggtgtgtcaagttagtctaattcactt |
38468405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 38468444 - 38468530
Alignment:
| Q |
290 |
ttaacgtgcttcattagcgcccctaactcttttaactaacatggtgcaaaaatggtggttagaattatattattgacattaaagtag |
376 |
Q |
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| T |
38468444 |
ttaacgtgccacattagcgcccctaactcttttaactaacattgtgcaaaaatggtggttacaattgtatagttggcatttaagtag |
38468530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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