View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_35 (Length: 435)
Name: NF7550_low_35
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 32819322 - 32819726
Alignment:
| Q |
20 |
agttggcagcatcttatatagatcatctctagcttcctcaccaattaaatgtggaaagctaagtactttctcaatgacaataatgatattagcataatgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32819322 |
agttggcagcatcttatatagatcatctctagcttcctcaccaattaaatgtggaaagctaagtactttctcaatgacaataatgatattagcataatgc |
32819421 |
T |
|
| Q |
120 |
aatgcaagtgcacatcctccaagagttgaaggaggagcataaacaacagctaatccactatttgcaccaaaggttgagcataagtgctcctttttcttca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32819422 |
aatgcaagtgcacatcctccaagagttgaaggaggagcataaacaacagctaatccactatttgcaccaaaggttgagcataagtgctcctttttcttga |
32819521 |
T |
|
| Q |
220 |
caatatttccaatcccaataggactttgagagcttgatacacaactgtattggtcctcgcgatcgatagcaacatcatcgaaatcgtcgaattttgaaac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32819522 |
caatatttccaatcccaataggactttgagagcttgatacacaactgtaatggtcctcgcgatcgatagcaacatcatcgaaatcgtcgaattttgaaac |
32819621 |
T |
|
| Q |
320 |
tgagctacttaaactcaggcattccatgaaaagtctcccaggacttgttccacaaggaaaaccaaaatcttcaagttgaacatatgctaactcacctctc |
419 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32819622 |
tgagctacttaaactcagacattccatgaaaagtctcccaggacttgttccacaaggaaaaccaaaatcttcaagttgaacatatgctaactcacctctc |
32819721 |
T |
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| Q |
420 |
ttcat |
424 |
Q |
| |
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||||| |
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| T |
32819722 |
ttcat |
32819726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 16550029 - 16549886
Alignment:
| Q |
21 |
gttggcagcatcttatatagatcatctctagcttcctcaccaattaaatgtggaaagctaagtactttctcaatgacaataatgatattagcataatgca |
120 |
Q |
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||||| ||||||| |||||||||||| || ||||||||||||| |||||| ||| ||| ||| | ||||| |||||||| |||| ||| ||||| |||| |
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| T |
16550029 |
gttggtagcatctgatatagatcatccctggcttcctcaccaactaaatgaggatagcgaagaagcttctctatgacaattatgacattggcatagtgca |
16549930 |
T |
|
| Q |
121 |
atgcaagtgcacatcctccaagagttgaaggaggagcataaaca |
164 |
Q |
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||||||| || | || ||||| ||||||||||||||||||||| |
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| T |
16549929 |
atgcaagagctgagccaccaagtgttgaaggaggagcataaaca |
16549886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 16549677 - 16549581
Alignment:
| Q |
292 |
catcatcgaaatcgtcgaattttgaaactgagctacttaaactcaggcattccatgaaaagtctcccaggacttgttccacaaggaaaaccaaaatc |
388 |
Q |
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|||||||| ||| || ||| ||| ||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16549677 |
catcatcggcatcatcaaatcttgcaaccgagctactcaaacttagacactccataaaaagtctccccggacttgttccacaaggaaaaccaaaatc |
16549581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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