View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_39 (Length: 405)
Name: NF7550_low_39
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_39 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Original strand, 47485506 - 47485908
Alignment:
| Q |
3 |
atcatatttctgatactgataggatacatagctagtagtattaagtttcttgtgatatactattttgatttgtcactcgccaggaataggcacaacatca |
102 |
Q |
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| T |
47485506 |
atcatatttctgatactgataggatacatagctagtagtattaagtttcttgtgatatactattttgatttgtcactcaccaggaataggcacaacatca |
47485605 |
T |
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| Q |
103 |
tggccttgttggagtatccatgctaatgctaactgagcagaagtgcactcatgtttcttggcaagactttcaattcgatcatataaatttttgttcttgt |
202 |
Q |
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| T |
47485606 |
tggccttgttggagtatccatgctaatgctaactgagcagaagcgcactcatgtttcttggcaagactttcaattcgatcatataaacttttgttcttgt |
47485705 |
T |
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| Q |
203 |
ccaagttctcggcttggaagcgaggatgagtagcctgaatagtgaaatgatcatatcagaaaacaacataaaagccttaattttatacaagaatttaaac |
302 |
Q |
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| T |
47485706 |
ccaagttctcggcttggaagcgaggatgagtagcctgaatagtgaaatgatcatatcagaaaacagcataaaagccttaattttatacaagaatttaaac |
47485805 |
T |
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| Q |
303 |
atcattcatgtgagaaaaacagataaggatgttatccccctcatcgtttctcttgttcaacaaaacaagtatatatttgcaatggaatggacatatacat |
402 |
Q |
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| T |
47485806 |
atcattcatgtgagaaaaacagataaggatgttatccccctcatcgtttctcttgttcaacaaaacaagtatatatttgcaatggaatggacatatacat |
47485905 |
T |
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| Q |
403 |
att |
405 |
Q |
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| T |
47485906 |
att |
47485908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 341
Target Start/End: Original strand, 47476088 - 47476374
Alignment:
| Q |
71 |
tttgtcactcgccaggaataggcacaacatcatggccttgttggagtatccatgctaatgctaactgagcagaagtgcactcatgtttcttggcaagact |
170 |
Q |
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| T |
47476088 |
tttgtcactcaccaggaataggcacaacatccttgccttgttggagtacccatgctaatgctaattgagcagtagtgcatccatgcctcttgctaagact |
47476187 |
T |
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| Q |
171 |
ttcaattcgatcatataaatttttgttcttgtccaagttctcggcttggaagcgaggatgagtagcctgaatagtgaaatgatcatatcagaaaacaaca |
270 |
Q |
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| T |
47476188 |
ttcaatcctatcatatataaccttgttcttgaccaagttctcagcttggaagcggggaaaagaagtctgataagtgaaataatc--atcagaaaacaaca |
47476285 |
T |
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| Q |
271 |
t----------aaaag-------ccttaattttatacaagaatttaaacatcattcatgtgag-aaaaacagataaggatgttatcccc |
341 |
Q |
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| T |
47476286 |
taaattttttaaaaaggaaaggtccttaattttatagaagactttaaacatcattcatgtgagaaaaaacagataaggatgatatcccc |
47476374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 71 - 341
Target Start/End: Original strand, 24802192 - 24802477
Alignment:
| Q |
71 |
tttgtcactcgccaggaataggcacaacatcatggccttgttggagtatccatgctaatgctaactgagcagaagtgcactcatgtttcttggcaagact |
170 |
Q |
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| T |
24802192 |
tttgtcactcaccaggaataggcacaacatccttgccttgttggagta-ccatgctaatgctaattgagcagtagtgcatccatgcttcttgctaagact |
24802290 |
T |
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| Q |
171 |
ttcaattcgatcatataaatttttgttcttgtccaagttctcggcttggaagcgaggatgagtagcctgaatagtgaaatgatcatatcagaaaacaaca |
270 |
Q |
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| T |
24802291 |
ttcaatcctatcatatataaccttgttcttgaccaagttctcagcttggaagcggggaaaagaagtctgataagtgaaataatc--attagaaaacaaca |
24802388 |
T |
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| Q |
271 |
t----------aaaag-------ccttaattttatacaagaatttaaacatcattcatgtgag-aaaaacagataaggatgttatcccc |
341 |
Q |
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| T |
24802389 |
taaattttttaaaaaggaaaggtccttaattttatagaagactttaaacatcattcatgtgagaaaaaacagataaggatgatatcccc |
24802477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 47472849 - 47472996
Alignment:
| Q |
85 |
ggaataggcacaacatcatggccttgttggagtatccatgctaatgctaactgagcagaagtgcactcatgtttcttggcaagactttcaattcgatcat |
184 |
Q |
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| T |
47472849 |
ggaataggcacaacatcctttccttgttggagtacccatgctaatgctaactgagcaggagtgcacccatgctttttgccaagactttcgatcttatcat |
47472948 |
T |
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| Q |
185 |
ataaatttttgttcttgtccaagttctcggcttggaagcgaggatgag |
232 |
Q |
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| T |
47472949 |
atatgtttttgttcttgttcaagttctcagcttggaagcggggatgag |
47472996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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