View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_4 (Length: 762)
Name: NF7550_low_4
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 206 - 751
Target Start/End: Original strand, 34797053 - 34797598
Alignment:
| Q |
206 |
tactgttttggtctctatttcagctttgatatgcttaagaacaacccggatgttgactgctctagggctaaagcaaaggatttttggtcggctgagactt |
305 |
Q |
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| T |
34797053 |
tactgttttggtctctatttcagctttgatatgcttaagaacaacccggatgttgactgctctagggctaaagcaaaggatttttggtcggctgagactt |
34797152 |
T |
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| Q |
306 |
atgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaagaaatgaaagcatgcctga |
405 |
Q |
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| T |
34797153 |
atgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaagaaatgaaagcatgcctga |
34797252 |
T |
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| Q |
406 |
acatctggtggacgcgtgtaagaggtgtgctcgagcatttataagggctgaatttcaggtatgctttgttccacctataactattcaggcaaattttagg |
505 |
Q |
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| T |
34797253 |
acatctagtggacgcgtgtaagaggtgtgctcgagcatttataagggccgaatttcaggtatgctttgttccacctataactattcaggcaaattttagg |
34797352 |
T |
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| Q |
506 |
tatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactagattaaatgaatgctttgattttatatcaattataagatagaagg |
605 |
Q |
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| T |
34797353 |
tatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactatattaaatgaatgctttgattttatatcaattataagatagaagg |
34797452 |
T |
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| Q |
606 |
tgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagnnnnnnnnccataggttatgtattt |
705 |
Q |
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| T |
34797453 |
tgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagaaaaaaaaccataggttatgtattt |
34797552 |
T |
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| Q |
706 |
attgcacctataaactgaggaagggagaaaaagcataattgttctt |
751 |
Q |
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| T |
34797553 |
attgcacctataaactgaggaagggagaaaaagcataattgttctt |
34797598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 34796865 - 34796986
Alignment:
| Q |
18 |
tttgcagctatgccgatggatggtgtgcttcttgcaagcgtaaatatgaagaggaagaagaggaacgtgcaaagccctggcagcaaatcaaacaggaagc |
117 |
Q |
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| T |
34796865 |
tttgcagctatgccgatggatggtgtgcttcttgcaagcgtaaatatgaagaggaagaagaggaacgtgcaaagccctggcagcaaatcaaacaggaagc |
34796964 |
T |
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| Q |
118 |
aattgaagaacttgcttttacg |
139 |
Q |
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| T |
34796965 |
aattgaagaacttgcttttacg |
34796986 |
T |
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Back To:
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