View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_41 (Length: 401)

Name: NF7550_low_41
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_41
NF7550_low_41
[»] chr4 (5 HSPs)
chr4 (197-392)||(2838039-2838232)
chr4 (1-171)||(2838255-2838425)
chr4 (89-134)||(52735150-52735195)
chr4 (89-134)||(6428046-6428092)
chr4 (59-135)||(27123318-27123395)
[»] chr6 (5 HSPs)
chr6 (59-138)||(281814-281894)
chr6 (63-134)||(9027606-9027678)
chr6 (59-135)||(2460117-2460194)
chr6 (59-135)||(32386529-32386606)
chr6 (111-139)||(24329970-24329998)
[»] chr3 (3 HSPs)
chr3 (59-137)||(11039305-11039384)
chr3 (59-135)||(37273161-37273238)
chr3 (59-135)||(43115083-43115160)
[»] chr2 (3 HSPs)
chr2 (59-132)||(11063518-11063592)
chr2 (89-138)||(30552639-30552690)
chr2 (59-136)||(17221506-17221584)
[»] chr5 (4 HSPs)
chr5 (59-100)||(35095752-35095793)
chr5 (59-135)||(30217109-30217185)
chr5 (60-131)||(11297163-11297235)
chr5 (59-135)||(11457126-11457202)
[»] chr7 (3 HSPs)
chr7 (72-141)||(33645940-33646010)
chr7 (71-135)||(6263342-6263406)
chr7 (59-138)||(12234855-12234935)
[»] chr1 (1 HSPs)
chr1 (76-129)||(30418165-30418218)
[»] scaffold0024 (1 HSPs)
scaffold0024 (59-126)||(27612-27680)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 197 - 392
Target Start/End: Complemental strand, 2838232 - 2838039
Alignment:
Q  197 ggtgactaagataatctctcatcacatcttaatttattgagtttattccaaatacaagagtttttgcatattattcctcacaagactaacaccaataaac 296  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838232 ggtgactaagataatctct--tcacatcttaatttattgagtttattccaaatacaagagtttttgcatattattcctcacaagactaacaccaataaac 2838135  T
Q  297 aaacttattaactacattaatttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatctcact 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2838134 aaacttattaactacattaatttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatttcact 2838039  T

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Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2838425 - 2838255
Alignment:
Q  1 ttcgtgtctggattgatttatttgatcttatttattttcataagaacttatgagactggagactgtttgcaagagcttatggaagtatcttatgacatgt 100  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838425 ttcgtgtttggaatgatttatttgatcttatttattttcataagaacttatgagactggagactgtttgcaagagcttatggaagtatcttatgacatgt 2838326  T
Q  101 caataagttatttaagcttatttccataagctctctagatacaccttatagcttatagaaaacaatttgac 171  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838325 caataagttatttcagcttatttccataagctctctagatacaccttatagcttatagaaaacaatttgac 2838255  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 52735195 - 52735150
Alignment:
Q  89 cttatgacatgtcaataagttatttaagcttatttccataagctct 134  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  52735195 cttatgacatgtccatatgttattttagcttatttccataagctct 52735150  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 6428092 - 6428046
Alignment:
Q  89 cttatgacatgtcaataagtt-atttaagcttatttccataagctct 134  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  6428092 cttatgacatgtccataagttgatttaagcatatttccataagctct 6428046  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 27123318 - 27123395
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctc 135  Q
    |||||||||||  |||||||||||||  | |||||||||||||  ||||||  ||| | |||||||||||||||||||    
T  27123318 gagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 27123395  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 281814 - 281894
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctctag 138  Q
    |||||||||||  |||||| ||||||| | ||||||||||||| |||||||  ||| ||||||||||||| ||||||||||    
T  281814 gagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctag 281894  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 9027678 - 9027606
Alignment:
Q  63 ctgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctct 134  Q
    ||||||| |||||||||||||| || ||||||||||||| |||||||  ||| ||||||||| ||||||||||    
T  9027678 ctgtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 2460117 - 2460194
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctc 135  Q
    |||||||||||  |||||||||||||  | |||||||||||||  ||||||  ||| | |||||||||||||||||||    
T  2460117 gagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 2460194  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 32386529 - 32386606
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctc 135  Q
    ||||| ||||| |||||||||||||| |||||||| ||||||| | || ||  ||| ||||||||| |||||||||||    
T  32386529 gagaccgtttgaaagagcttatggaaatatcttataacatgtccacaacttgttttcagcttattttcataagctctc 32386606  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 24329970 - 24329998
Alignment:
Q  111 tttaagcttatttccataagctctctaga 139  Q
    |||||||||||||||||||||||||||||    
T  24329970 tttaagcttatttccataagctctctaga 24329998  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 11039305 - 11039384
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctcta 137  Q
    ||||||||||| ||||||||||||||  || |||||||||||| |||||||  ||| ||||||| |||||||||| ||||    
T  11039305 gagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagctatcta 11039384  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 37273238 - 37273161
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctc 135  Q
    |||||||||||  |||||||||||||  | ||||||||||||| |||||||  ||| | |||||||||||||| ||||    
T  37273238 gagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctc 37273161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 43115160 - 43115083
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagttattta-agcttatttccataagctctc 135  Q
    |||| |||||| ||||| ||||||||  | ||||||||||||| |||| || |||  |||||||||||||||||||||    
T  43115160 gagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 11063592 - 11063518
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagct 132  Q
    ||||||||||| ||||||||||||||  || |||||||||||| |||||||  ||| ||||||||| ||||||||    
T  11063592 gagactgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataagct 11063518  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 30552639 - 30552690
Alignment:
Q  89 cttatgacatgtcaataagtta--tttaagcttatttccataagctctctag 138  Q
    |||||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  30552639 cttatgacatgtcaataagttggtttttagcttatttccataagctctctag 30552690  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 17221506 - 17221584
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaat-aagttatttaagcttatttccataagctctct 136  Q
    ||||||||| | |||||||||||||| ||||||||||||| || || || || ||| ||||||||||| |||| |||||    
T  17221506 gagactgttcggaagagcttatggaaatatcttatgacatatccataaactttttttagcttatttccgtaagatctct 17221584  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 35095752 - 35095793
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgt 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  35095752 gagactgtttggaagagcttatggaaatatcttatgacatgt 35095793  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 30217185 - 30217109
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctc 135  Q
    ||||||||||   ||||||||||||| ||||||||| |||||| |||||||  |||| | ||||||||||||||||||    
T  30217185 gagactgtttaggagagcttatggaattatcttatg-catgtccataagttgttttaggtttatttccataagctctc 30217109  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 11297163 - 11297235
Alignment:
Q  60 agactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtta-tttaagcttatttccataagc 131  Q
    |||||||||| ||||||||||||||  | |||| ||||||||||| || || ||| ||||||||| |||||||    
T  11297163 agactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctattttcagcttattttcataagc 11297235  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 11457202 - 11457126
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagttatttaagcttatttccataagctctc 135  Q
    ||||||||||  ||||||||||||||  | ||||||||||||| ||||| | ||| |  ||||||| ||||||||||    
T  11457202 gagactgttttgaagagcttatggaaacaacttatgacatgtccataagctgtttcatattatttctataagctctc 11457126  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 33645940 - 33646010
Alignment:
Q  72 agagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttccataagctctctagata 141  Q
    |||||||||||||  | ||||||||||||| |||||||  ||| || |||||||||||||||||| |||||    
T  33645940 agagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctccagata 33646010  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 6263342 - 6263406
Alignment:
Q  71 aagagcttatggaagtatcttatgacatgtcaataagttatttaagcttatttccataagctctc 135  Q
    ||||||||| | || || ||||||| ||||| ||||||| ||| |||||||||||||| ||||||    
T  6263342 aagagcttacgcaaataacttatgagatgtccataagttgttttagcttatttccatatgctctc 6263406  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 12234855 - 12234935
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagttattta-agcttatttccataagctctctag 138  Q
    ||||||| ||| || ||||||| |||  | ||||||||||||| ||||| | |||  ||||||||||||||||||||||||    
T  12234855 gagactgcttggaatagcttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctag 12234935  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 30418165 - 30418218
Alignment:
Q  76 cttatggaagtatcttatgacatgtcaataagttatttaagcttatttccataa 129  Q
    |||||||||  | ||||||||||||| ||||||||||| ||||| |||||||||    
T  30418165 cttatggaaacaacttatgacatgtccataagttatttcagcttttttccataa 30418218  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 27680 - 27612
Alignment:
Q  59 gagactgtttgcaagagcttatggaagtatcttatgacatgtcaataagtt-atttaagcttatttcca 126  Q
    |||||||||||  ||||||||||||| || ||||||||||| | |||||||  ||| ||||||||||||    
T  27680 gagactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttcca 27612  T

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