View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_43 (Length: 391)
Name: NF7550_low_43
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_43 |
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| [»] scaffold0347 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Original strand, 8419817 - 8420188
Alignment:
| Q |
4 |
tccttcaacccaattaatcacttccacatcactaattagctgacttggcactgctgattggttaaatgagatgatgagtcagcaaaagatgtcttgaact |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8419817 |
tccttcaacccaattaatcacttccacatcactaattagctgacttggcattgctgattggttaaatgagatgatgagttagcaaaagatgtcttgaact |
8419916 |
T |
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| Q |
104 |
gacaaaaatccccctgatacttcaactaaaaatgaaatgaccattatgccctcttattcttattcttccctcacatacattctttactctcttcaatcca |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8419917 |
gacaaaaatccccctgggacttcaactaaaaatgaaatgaccattatgccctcttattcttattcttccctcacatacattctttactctcttcaatcca |
8420016 |
T |
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| Q |
204 |
gattcataatcttcttcttttcaagatgggtttaagagatttagagttgaagataagtgattcaaatctgggttgaatcttcttcttcttttcaatctga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8420017 |
gattcataatcttcttcttttcaagatgggtttaagagatttagagttgaagataagtgattcaaatctgggttgaatcttcttcttcttttcaatttga |
8420116 |
T |
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| Q |
304 |
cccggtagccacaattccaatcaaatcacgaccatcaaatttttaagttttctcaaattagtgagaaataac |
375 |
Q |
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| T |
8420117 |
cctggtagccacaattccaatcaaatcacgaccatcaaatttttaagttttctcaaattagtgagaaataac |
8420188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 952288 - 952479
Alignment:
| Q |
27 |
ccacatcactaattagctgacttggcactgctgattggttaaatgagatgatgagtcagcaaaagatgtcttgaactgacaaaaatccccctgatacttc |
126 |
Q |
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| T |
952288 |
ccacatcactgattagctgacttgacagtgttgactggttaaatgagatgatgtgttaacaaaaaatggtgtgaactgacaaaagtgcccatga-aggcc |
952386 |
T |
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| Q |
127 |
aactaaaaatgaaatgaccattatgccctcttattcttattcttccctcacatacattctttactctcttcaatccagattcataatcttctt |
219 |
Q |
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| T |
952387 |
aagcaaaagcaaaatgaccattatgccctcttattcttcttcttccctcacataccttttgcaccctcttcactccagattcataatcttctt |
952479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 29566543 - 29566452
Alignment:
| Q |
27 |
ccacatcactaattagctgacttggcactgctgattggttaaatgagatgatgagtcagcaaaagatgtcttgaactgacaaaaatccccct |
118 |
Q |
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| T |
29566543 |
ccacatcactaattagctgacttggcagtgctgactagttaaatgagatgatgaatcaacaaaagatggtgtgaactgacaaaaatacccct |
29566452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 14575 - 14514
Alignment:
| Q |
12 |
cccaattaatcacttccacatcactaattagctgacttggcactgctgattggttaaatgag |
73 |
Q |
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| T |
14575 |
cccacttaatcactgccacatcactgattagctgacgtggctctgtttattggttaaatgag |
14514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 11616013 - 11616052
Alignment:
| Q |
300 |
ctgacccggtagccacaattccaatcaaatcacgaccatc |
339 |
Q |
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| T |
11616013 |
ctgacccagtagccgcaattccaatcaaatcacgaccatc |
11616052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 28621002 - 28621046
Alignment:
| Q |
10 |
aacccaattaatcacttccacatcactaattagctgacttggcac |
54 |
Q |
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| T |
28621002 |
aacccatttaatcactgccacatcactaattagctggcgtggcac |
28621046 |
T |
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