View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_48 (Length: 360)
Name: NF7550_low_48
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 7128865 - 7129190
Alignment:
| Q |
19 |
catgaatcgatgatccgtgtttattggattcactacattcacagatctcgattgttgtatactaattggacaaaaactcatatttcaagatgtatatcga |
118 |
Q |
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| T |
7128865 |
catgaatcgatgatccgtgtttattggattcactacattcacagatctcgattgttgtataataattggacgaaaactcatattttaagatgtatatcaa |
7128964 |
T |
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| Q |
119 |
tactaatatgatgaaaataaaatataagttgtctgatcttcatcgaacgatcgagacttcttgactttgattgcatgctcttatgactgcagcaaatccg |
218 |
Q |
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| T |
7128965 |
aactaatatgatgaaaataaaatataagttgtctgatcttcatcgaa----cgagacttcttgactttgattgcatgctcttatgactgcagcaaatccg |
7129060 |
T |
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| Q |
219 |
agtccataatgtactagcatgtctgtagtgattacatggttcacacgcttattttaaatgtcaaattgtatgcgtttcagtgataggagaagcggaggca |
318 |
Q |
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| T |
7129061 |
agtccataatgtactatcatgtctgtagtgattacatggttcacacgctta-tttaaatgtcagattgtacgcgtttcggtgataggagaagcggaggca |
7129159 |
T |
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| Q |
319 |
attgatgctacagaagcaggggaatgatatt |
349 |
Q |
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| T |
7129160 |
attgatgctacagaagcaggggactgatatt |
7129190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 3409122 - 3409036
Alignment:
| Q |
19 |
catgaatcgatgatccgtgtttattggattcactacat------tcacagatctcgattgttgtatactaattggacaaaaactcat |
99 |
Q |
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| T |
3409122 |
catgaatcgatgatccgtgtttattggattctctacatccacaaccacaaatctcgattgttgtataataagtggacgaaaactcat |
3409036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 3409002 - 3408955
Alignment:
| Q |
120 |
actaatatgatgaaaataaaatataagttgtctgatcttcatcgaacg |
167 |
Q |
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||||||||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
3409002 |
actaatatggtgatgataaaatataagttgtttgatcttcatcgaacg |
3408955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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