View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_5 (Length: 755)
Name: NF7550_low_5
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_5 |
 | |
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| [»] chr2 (1 HSPs) |
| |
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| [»] scaffold0267 (3 HSPs) |
| | |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Original strand, 33636960 - 33637697
Alignment:
| Q |
18 |
aaatgtgcacttctttatatgcttggttgtacctgtcgttttttatccacggttctagattataaacttctgcgttaaagggaaaagcaggtaaagaagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
33636960 |
aaatgtgcacttctttatatgcttggttgtacctgtcgttttttatccacggttctagattataaacatctgcattaaagggtaaagcaggtaaagaagt |
33637059 |
T |
|
| Q |
118 |
catcctttttgccatgatgaccaaaaaactaattgaacctactgtataaagatgccgaaaagcctttctaatatattcaacacatctaatatctgacaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637060 |
catcctttttgccatgatgaccaaaaaactaactgaacctactgtataaagatgccgtaaagcctttctaatatattcaacacatctaatatctgacaat |
33637159 |
T |
|
| Q |
218 |
gcatatcttaaaataaactatggagcaaatgaaatcaatagcaagtggaggaatataaattaactcataataactagtataaaattaaaatatcttcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637160 |
gcatatcttaaaataaactatggagcaaatgaaatcaatagcaagtggaggaatataaattaactcataataactagtataaaattaaaatatcttcatc |
33637259 |
T |
|
| Q |
318 |
caaaggatttgattctaagctagcaataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637260 |
caaaggatttgattctaagctagcaataagtacaaaggaatcatccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtc |
33637359 |
T |
|
| Q |
418 |
atcacactacttgcacgacctaacataaattcaaaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcata |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
33637360 |
atcacactacttgcacgacctaacataaattcaaaatacaaacaattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcata |
33637459 |
T |
|
| Q |
518 |
tgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatcatctctcctattatacataataatatcatcaaaagctcctttgc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
33637460 |
tgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctctatcatctctcctattatacatactaatatcatcaaaagctcctttgc |
33637559 |
T |
|
| Q |
618 |
tagccatcaacatgacatttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcatagaaatacccaattgaacatagctaac |
717 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
33637560 |
tagccagcaacatgacatttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcacacaaatacccaattgaacatagctaac |
33637659 |
T |
|
| Q |
718 |
attcaccaatcgagtccaagactcttgaactccaaact |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637660 |
attcaccaatcgagtccaagactcttgaactccaaact |
33637697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 337 - 545
Target Start/End: Complemental strand, 13824 - 13615
Alignment:
| Q |
337 |
ctagcaataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgac |
436 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | ||||| || |
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|
| T |
13824 |
ctagcaacaagtacaatgaaatcatccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaac |
13725 |
T |
|
| Q |
437 |
ctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaa |
535 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||||||||||| | | |
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|
| T |
13724 |
ctaacataaattcagaaaaacaaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacga |
13625 |
T |
|
| Q |
536 |
atttggttgt |
545 |
Q |
| |
|
|||||||||| |
|
|
| T |
13624 |
atttggttgt |
13615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 704 - 755
Target Start/End: Complemental strand, 13465 - 13414
Alignment:
| Q |
704 |
tgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaact |
755 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13465 |
tgaacatagctaacattcaccaactgagtccaagactcttgaactccaaact |
13414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 13911 - 13861
Alignment:
| Q |
241 |
agcaaatgaaatcaatagcaagtggaggaatataaa-ttaactcataataa |
290 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
13911 |
agcaaatgaaatcaatagcaagtggagaaatataaacttaactcataataa |
13861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 337 - 545
Target Start/End: Complemental strand, 3838343 - 3838134
Alignment:
| Q |
337 |
ctagcaataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgac |
436 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| || |
|
|
| T |
3838343 |
ctagcaataagtacaatgaaatcatccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaac |
3838244 |
T |
|
| Q |
437 |
ctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaa |
535 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| || |||||||||| ||||| |||||||||||||||| ||||||||| |||||||| | | |
|
|
| T |
3838243 |
ctaacataaattcagaaaaacaaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacga |
3838144 |
T |
|
| Q |
536 |
atttggttgt |
545 |
Q |
| |
|
|||||||||| |
|
|
| T |
3838143 |
atttggttgt |
3838134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 708 - 755
Target Start/End: Complemental strand, 3837980 - 3837933
Alignment:
| Q |
708 |
catagctaacattcaccaatcgagtccaagactcttgaactccaaact |
755 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3837980 |
catagctaacattcaccaactgagtccaagactcttgaactccaaact |
3837933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 3838430 - 3838380
Alignment:
| Q |
241 |
agcaaatgaaatcaatagcaagtggaggaatataaa-ttaactcataataa |
290 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3838430 |
agcaaatgaaatcaatagcaagtggagaaatataaacttaactcataataa |
3838380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 595
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
467 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
566 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||| |||||| | |
|
|
| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
|
| Q |
567 |
ctttatcatctctcctattatacataata |
595 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |
|
|
| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 536
Target Start/End: Complemental strand, 29126856 - 29126661
Alignment:
| Q |
341 |
caataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaa |
440 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||||| ||||||| || |||||||||||||||||| | |||||| ||||||| |||||||| || ||| |
|
|
| T |
29126856 |
caataaatacaatgaaatcatctaacaaaataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaa |
29126757 |
T |
|
| Q |
441 |
cataaattcaaaata-caaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
536 |
Q |
| |
|
|| ||| |||| | |||| ||||||||||||||| |||||| |||| |||| ||||||| |||||| | |||||||||| | ||||||||| |
|
|
| T |
29126756 |
tgtatattaaaaaaatcaaattgttgttgcatagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 357 - 596
Target Start/End: Original strand, 13784008 - 13784247
Alignment:
| Q |
357 |
atcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatac |
456 |
Q |
| |
|
||||| |||||||||| | |||||| ||| ||||||||| |||||||||||| |||| |||||| | |||| || || || || ||| ||| || |
|
|
| T |
13784008 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaac |
13784107 |
T |
|
| Q |
457 |
aaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttca |
556 |
Q |
| |
|
||||| ||| || | || ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || | |
|
|
| T |
13784108 |
aaacaattgatgtagaggagcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattga |
13784207 |
T |
|
| Q |
557 |
atatgttcagctttatcatctctcctattatacataataa |
596 |
Q |
| |
|
| | |||| || |||||||||||| |||||||||||||| |
|
|
| T |
13784208 |
agaaattcaactatatcatctctccgattatacataataa |
13784247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 13783860 - 13783911
Alignment:
| Q |
269 |
aatataaattaactcataataactagtataaaattaaaatatcttcatccaa |
320 |
Q |
| |
|
|||||||| ||||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
13783860 |
aatataaactaactcatactaattaatataaaattaaaatatcatcatccaa |
13783911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 708 - 755
Target Start/End: Original strand, 20475969 - 20476016
Alignment:
| Q |
708 |
catagctaacattcaccaatcgagtccaagactcttgaactccaaact |
755 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20475969 |
catagctaacattcaccaaccgagtccaagactcttgaaccccaaact |
20476016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 354 - 530
Target Start/End: Original strand, 20475629 - 20475806
Alignment:
| Q |
354 |
ggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aa |
452 |
Q |
| |
|
|||||||||||||||||| | |||||| | | ||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| || |
|
|
| T |
20475629 |
ggaatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaa |
20475728 |
T |
|
| Q |
453 |
atacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
530 |
Q |
| |
|
| | ||| ||||||||||| | |||||||| |||| |||| | |||||||||||||||| |||||| |||| ||||| |
|
|
| T |
20475729 |
aaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 596
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
470 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
569 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
|
|
| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
|
| Q |
570 |
tatcatctctcctattatacataataa |
596 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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