View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_51 (Length: 351)
Name: NF7550_low_51
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 55959157 - 55959482
Alignment:
| Q |
22 |
acgcgatcaatttttgcaacgcgattgaaaaacttgatacagattaaagtttattagctaacccatattacggctttgacattctcttgtgtgattggga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55959157 |
acgcgatcaatttttgcaacgcgattgaaaaacttgatacagattaaagtttattagctaagccatattacggctttgacattctcttgtgtgattggga |
55959256 |
T |
|
| Q |
122 |
cctcgagatagccactttgttgaacacgcaaaagaacatcaactaaattttcatcttgcatgccggcatggattgaatttgtttgatgctcgttgataat |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55959257 |
cctcgagatagccactttgttgaacgcgcaaaagaacatcaactaaattttcatcttgcatgccggcatggattgaatttgtttgatgctcgttgataat |
55959356 |
T |
|
| Q |
222 |
gctttcgaaaattttatccgacttcttctgcatactctgcaatctagctttagtcctagtaataaaatgaatagctttgaatgaagggaacaaatcaaca |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55959357 |
gctttctaaaattttatccgacttcttctgcatactctgcaatctagctttagtcctagtaataaaatgaatagctttgaatgaagcgaacaaatcaaca |
55959456 |
T |
|
| Q |
322 |
acatcgaaaccactcgccatttccac |
347 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55959457 |
acatcgaaaccactcgccatttccac |
55959482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 55955785 - 55956038
Alignment:
| Q |
91 |
acggctttgacattctcttgtgtgattgggacctcgagatagccactttgttgaacacgcaaaagaacatcaactaaattttcatcttgcatgccggcat |
190 |
Q |
| |
|
|||||||||||||| || | |||||| |||| |||| || | ||||||| ||||| ||||||||||||||||||| ||||||| | || |||| || |
|
|
| T |
55955785 |
acggctttgacattgtcgtctgtgatagggatatcgaaattgtcactttgctgaacgcgcaaaagaacatcaactagattttcaccctgtttgcc---at |
55955881 |
T |
|
| Q |
191 |
ggattgaatttgtttgatgctcgttgataatgctttcgaaaattttatccgacttcttctgcatactctgcaatctagctttagtcctagtaataaaatg |
290 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| ||||| |||||| |||||| |||||| |||||||| ||||||| |||| ||| |||| ||| |
|
|
| T |
55955882 |
ggattgaatttgattgatgctctttgataatgctttctaaaatcttatccagcttcttttgcatattctgcaatttagctttcgtccgagtgataagatg |
55955981 |
T |
|
| Q |
291 |
aatagctttgaatgaagggaacaaatcaacaacatcgaaaccactcgccatttccac |
347 |
Q |
| |
|
||||| ||| ||||||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
55955982 |
aataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccac |
55956038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 346
Target Start/End: Original strand, 12426106 - 12426364
Alignment:
| Q |
79 |
ctaacccatattacggctttgacattctcttgtgtgattgggacctcgagatagccactttgttgaacacgcaaaagaacatcaactaaattttcatctt |
178 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||| ||||||| || || ||| || | |||||||||||||| |||| ||||||| ||| |
|
|
| T |
12426106 |
ctaacccagattacggctttgacattgtcttgtgttattgggatctcgagactgctacgttgctggatgcgcaaaagaacatctactagattttcacctt |
12426205 |
T |
|
| Q |
179 |
gcatgccggcatggattgaatttgtttgatgctcgttgataatgctttcgaaaattttatccgacttcttctgcatactctgcaatctagctttagtcct |
278 |
Q |
| |
|
||| | ||| || |||| |||||||||||| ||||||||||| ||||| ||||| ||||||| |||| | ||| |||| | | ||| ||| |
|
|
| T |
12426206 |
gcagg---gcagggtttga------ttgatgctcgtttataatgctttctaaaatcatatccaacttcttttgcaaattctccaattttggttttatccc |
12426296 |
T |
|
| Q |
279 |
agtaataaaatgaatagctttgaatgaagggaacaaatcaacaacatcgaaaccactcgccatttcca |
346 |
Q |
| |
|
|||||| |||||||||| ||| |||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
12426297 |
agtaattaaatgaataggtttaaatgaaggaaacaaatcagcaacatcaaaaccacttgccatttcca |
12426364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 12266714 - 12266612
Alignment:
| Q |
79 |
ctaacccatattacggctttgacattctcttgtgtgattgggacctcgagatagccactttgttgaacacgcaaaagaacatcaactaaattttcatctt |
178 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||| | ||| ||| ||||| |||| |||| |||||||||||||| ||||||| ||| |
|
|
| T |
12266714 |
ctaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcgcagaagaacatcaactatattttcacctt |
12266615 |
T |
|
| Q |
179 |
gca |
181 |
Q |
| |
|
||| |
|
|
| T |
12266614 |
gca |
12266612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University