View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_52 (Length: 350)
Name: NF7550_low_52
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 65 - 329
Target Start/End: Original strand, 15276540 - 15276805
Alignment:
| Q |
65 |
caagatgaccatggcatttttaaatcatttttgtgatgatgaaaatgtagtttgtcnnnnnnnatgtgtaatcctttttcgtgttgccctggagatctga |
164 |
Q |
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| T |
15276540 |
caagatgaccatggcatttttaaatcatttttgtgatgatgaaaatgtagtttgtctttttttatgtgtaatcctttttcgtgttgccctggagatctga |
15276639 |
T |
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| Q |
165 |
gg-gnnnnnnnnttgtttcagtcatgtttgcctaatattaagaattaaatatcttttgacaaacctaatatgannnnnnnncttctacgggcctagtgat |
263 |
Q |
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| T |
15276640 |
ggaaaaaaaaatttgtttcagtcatgtttgcctaatattaagaattaaatatcttttgacaaacctaatatgattttttttcttctacgggccaagtgat |
15276739 |
T |
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| Q |
264 |
caacaaatgcttaaataaacacacataagaaggagaaatatggtgattcaggtttgaacttggatt |
329 |
Q |
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| T |
15276740 |
caacaaatgcttaaataaacacacataagatggagaaatatggtgattcgggtttgaacctggatt |
15276805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15276452 - 15276499
Alignment:
| Q |
1 |
gattatttcaaccatgagcttgtcactctaattctgcatttttccttc |
48 |
Q |
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| T |
15276452 |
gattatttcaaccatgagcttgtcactctaatgctgcatttttccttc |
15276499 |
T |
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