View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_54 (Length: 340)

Name: NF7550_low_54
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_54
NF7550_low_54
[»] chr8 (7 HSPs)
chr8 (18-329)||(38874694-38875005)
chr8 (142-188)||(14926893-14926939)
chr8 (142-180)||(42215219-42215257)
chr8 (141-186)||(9700113-9700158)
chr8 (81-125)||(31884856-31884900)
chr8 (154-190)||(34769427-34769463)
chr8 (142-190)||(35534522-35534570)
[»] chr3 (14 HSPs)
chr3 (47-123)||(25459548-25459624)
chr3 (84-125)||(51929854-51929895)
chr3 (46-109)||(37273209-37273272)
chr3 (142-184)||(50760704-50760746)
chr3 (142-179)||(584159-584196)
chr3 (151-180)||(9832674-9832703)
chr3 (141-178)||(48364834-48364871)
chr3 (141-178)||(48807811-48807848)
chr3 (84-125)||(53762310-53762351)
chr3 (46-122)||(3775770-3775846)
chr3 (33-125)||(4534291-4534382)
chr3 (154-186)||(43046789-43046821)
chr3 (68-132)||(43948751-43948815)
chr3 (141-185)||(51929853-51929897)
[»] chr7 (7 HSPs)
chr7 (81-124)||(24363517-24363560)
chr7 (128-188)||(23214954-23215014)
chr7 (142-187)||(34083520-34083565)
chr7 (144-180)||(5010390-5010426)
chr7 (79-119)||(32410648-32410688)
chr7 (154-186)||(40371567-40371599)
chr7 (144-180)||(40598404-40598440)
[»] chr4 (10 HSPs)
chr4 (143-186)||(44638139-44638182)
chr4 (55-109)||(28615608-28615662)
chr4 (154-189)||(10205851-10205886)
chr4 (79-122)||(22796763-22796806)
chr4 (54-109)||(25487489-25487544)
chr4 (81-122)||(10172172-10172213)
chr4 (142-171)||(34430626-34430655)
chr4 (84-120)||(3637299-3637335)
chr4 (83-123)||(35571549-35571589)
chr4 (45-121)||(44320023-44320099)
[»] chr2 (14 HSPs)
chr2 (142-189)||(2416426-2416473)
chr2 (67-125)||(15370239-15370297)
chr2 (19-123)||(32821858-32821961)
chr2 (78-126)||(33503105-33503153)
chr2 (145-180)||(9395245-9395280)
chr2 (67-122)||(11513992-11514047)
chr2 (67-110)||(14302918-14302961)
chr2 (154-188)||(6772444-6772478)
chr2 (81-123)||(10285970-10286012)
chr2 (142-188)||(35378443-35378489)
chr2 (142-180)||(37448696-37448734)
chr2 (141-181)||(3458707-3458747)
chr2 (81-125)||(40759270-40759314)
chr2 (85-125)||(42868397-42868437)
[»] chr1 (10 HSPs)
chr1 (142-180)||(42556525-42556563)
chr1 (67-122)||(12763419-12763475)
chr1 (142-189)||(11695975-11696021)
chr1 (46-120)||(4549462-4549536)
chr1 (144-182)||(28467548-28467586)
chr1 (83-125)||(37631475-37631517)
chr1 (141-178)||(24279861-24279898)
chr1 (142-178)||(1662686-1662722)
chr1 (83-123)||(11695974-11696014)
chr1 (142-174)||(29723602-29723634)
[»] chr6 (9 HSPs)
chr6 (46-123)||(8010432-8010509)
chr6 (149-186)||(29249513-29249550)
chr6 (55-128)||(31461756-31461829)
chr6 (83-126)||(103542-103585)
chr6 (83-123)||(835179-835219)
chr6 (142-178)||(5977042-5977078)
chr6 (81-125)||(12111077-12111121)
chr6 (142-174)||(12111080-12111112)
chr6 (142-174)||(31338090-31338122)
[»] chr5 (11 HSPs)
chr5 (141-186)||(9174928-9174973)
chr5 (127-174)||(31723903-31723950)
chr5 (67-122)||(36326104-36326159)
chr5 (141-171)||(1899265-1899295)
chr5 (84-122)||(9174929-9174967)
chr5 (154-192)||(34736434-34736472)
chr5 (141-186)||(8651265-8651310)
chr5 (24-109)||(11457152-11457236)
chr5 (83-124)||(16937800-16937841)
chr5 (81-125)||(6938649-6938693)
chr5 (142-186)||(7705911-7705955)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 38874694 - 38875005
Alignment:
Q  18 aaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874694 aaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatcc 38874793  T
Q  118 aaacaggcttagtctcattggtctttatgctagtaaataagctcaaataagtcaatctaaacatgccctaattggttattttgttaatgctgtcagcact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874794 aaacaggcttagtctcattggtctttatgctagtaaataagctcaaataagtcaatctaaacatgccctaattggttattttgttaatgctgtcagcact 38874893  T
Q  218 ttggtggttgcactggttatggtcatgatgaagctggggggcgtgaagctctcgaccaggcttttgcagaaattgttggagcagaatcagctattgttcg 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38874894 ttggtggttgcactggttatggtcatgatgaaactggggggcgtgaagctcttgaccaggcttttgcagaaattgttggagcagaatcagctattgttcg 38874993  T
Q  318 ttcacaggttct 329  Q
    ||||||||||||    
T  38874994 ttcacaggttct 38875005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 14926939 - 14926893
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 188  Q
    |||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  14926939 ttatgccagtaaataagttcaaataagtcaatccaaacaagccctaa 14926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 42215257 - 42215219
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  42215257 ttatgccagtaaataagctcaaataagttaatctaaaca 42215219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 9700113 - 9700158
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    |||||||||||| |||||||||||||||| |||| ||||| |||||    
T  9700113 tttatgctagtagataagctcaaataagttaatccaaacaggccct 9700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 31884900 - 31884856
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||||| |||||||||||||||||  |||||||| |||||    
T  31884900 tgcttatgctagtagataagctcaaataacgcaatccaagcaggc 31884856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 34769463 - 34769427
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccctaatt 190  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  34769463 ataagctcaaatatgtcaatccaaacatgccctaatt 34769427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 35534570 - 35534522
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaatt 190  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||| ||||    
T  35534570 ttatgttagtagataagctcaaataagtcattctaaacaggccccaatt 35534522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 25459624 - 25459548
Alignment:
Q  47 tgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    ||||||| ||||||||||  |||| ||| || | ||||||||||| | |||||||||||||||| ||||||||||||    
T  25459624 tgtttctctaagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacag 25459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 51929854 - 51929895
Alignment:
Q  84 ttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  51929854 ttatgctaatagataagctcaaataagtcaatccaaacaggc 51929895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 37273209 - 37273272
Alignment:
Q  46 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 109  Q
    ||||||| ||||||||| |  |||||||| |||| |||||||||||||| ||||| ||||||||    
T  37273209 ttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataa 37273272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 50760704 - 50760746
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgcc 184  Q
    ||||||| ||| || ||||||||||||||||||||||||||||    
T  50760704 ttatgcttgtagatgagctcaaataagtcaatctaaacatgcc 50760746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaac 179  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 9832703 - 9832674
Alignment:
Q  151 taaataagctcaaataagtcaatctaaaca 180  Q
    ||||||||||||||||||||||||||||||    
T  9832703 taaataagctcaaataagtcaatctaaaca 9832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 48364871 - 48364834
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaa 178  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  48364871 tttatactagtaaataaactcaaataagtcaatctaaa 48364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 48807811 - 48807848
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaa 178  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  48807811 tttatgctagtaaataagcttaaataactcaatctaaa 48807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 53762351 - 53762310
Alignment:
Q  84 ttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    |||||||| |||||||||||||||||| |||||||| |||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagcaggc 53762310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 3775846 - 3775770
Alignment:
Q  46 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    ||||||||||||||||| |  |||||||| || | || |||||| | ||||||| |||||||||  |||||||||||    
T  3775846 ttgtttctataagctctgccaaacagtctaacaattgtttatgccagtagataaactcaaataaggcaatccaaaca 3775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 4534382 - 4534291
Alignment:
Q  33 acgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    |||||||||| ||| |||||||||| |||| |  || ||| |||| |  |||||||  |||||||||||||||||||| ||||| ||||||||    
T  4534382 acgtgttataagtt-gtttctataacctctaccaaatagttttacaagggcttatgtgaatagataagctcaaataaatcaatcgaaacaggc 4534291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 43046789 - 43046821
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccct 186  Q
    ||||| |||||||||||||||||||||||||||    
T  43046789 ataagttcaaataagtcaatctaaacatgccct 43046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 43948751 - 43948815
Alignment:
Q  68 acagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtct 132  Q
    ||||||| || ||||||||||  ||||||| | ||||||| |  |||||||||||||||||||||    
T  43948751 acagtctcacaaatgcttatgacaatagattaactcaaattagccaatccaaacaggcttagtct 43948815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 51929853 - 51929897
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaacatgccc 185  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||    
T  51929853 tttatgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 24363560 - 24363517
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacagg 124  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  24363560 tgcttatgctagtagataaactcaaataaaacaatccaaacagg 24363517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 23214954 - 23215014
Alignment:
Q  128 agtctcattggtctttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 188  Q
    ||||||||  || |||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  23214954 agtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaacatgctctaa 23215014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 34083565 - 34083520
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgcccta 187  Q
    |||||| |||| || |||||||||||||||||| ||||||||||||    
T  34083565 ttatgcaagtagatgagctcaaataagtcaatccaaacatgcccta 34083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 5010426 - 5010390
Alignment:
Q  144 atgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    |||||||||||||| |||||||||||||||| |||||    
T  5010426 atgctagtaaataaactcaaataagtcaatcaaaaca 5010390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 32410648 - 32410688
Alignment:
Q  79 aatgcttatgctaatagataagctcaaataaaacaatccaa 119  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  32410648 aatgcttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 40371599 - 40371567
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccct 186  Q
    ||||||||||||||||||||| |||||||||||    
T  40371599 ataagctcaaataagtcaatccaaacatgccct 40371567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  144 atgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 44638182 - 44638139
Alignment:
Q  143 tatgctagtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  44638182 tatgctagtaaataaactcaaataagtcaatccaaacatgccct 44638139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 28615608 - 28615662
Alignment:
Q  55 taagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 109  Q
    ||||||||||| ||||||||||| ||||||||||  | |||||||||||||||||    
T  28615608 taagctcttcgaaacagtcttacaaatgcttatgtcattagataagctcaaataa 28615662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 10205886 - 10205851
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccctaat 189  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10205886 ataagctcaaataagtcaatctaaacatgccataat 10205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 22796763 - 22796806
Alignment:
Q  79 aatgcttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  22796763 aatgcttatgctagtagataaactcaaataaatcaatccaaaca 22796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 25487544 - 25487489
Alignment:
Q  54 ataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 109  Q
    |||||||||||  |||| |||||| | ||||||||||||||||||| |||||||||    
T  25487544 ataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaataa 25487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 10172172 - 10172213
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    |||||||||  ||||||||||||||||||| |||||||||||    
T  10172172 tgcttatgcatatagataagctcaaataaatcaatccaaaca 10172213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 34430655 - 34430626
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtca 171  Q
    ||||||||||||||||||||||||||||||    
T  34430655 ttatgctagtaaataagctcaaataagtca 34430626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 3637335 - 3637299
Alignment:
Q  84 ttatgctaatagataagctcaaataaaacaatccaaa 120  Q
    ||||||||||||||||||||||||||  |||||||||    
T  3637335 ttatgctaatagataagctcaaataagtcaatccaaa 3637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 35571589 - 35571549
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  35571589 cttatgctagtagataagctcaaataagccaatccaaacag 35571549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 44320023 - 44320099
Alignment:
Q  45 tttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaac 121  Q
    |||||||  ||||||||| |  |||||||| || | || |||||| ||||| |||||||||||||| ||||||||||    
T  44320023 tttgttttcataagctctcccaaacagtctcacaattgtttatgccaataggtaagctcaaataaaccaatccaaac 44320099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 2416426 - 2416473
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 189  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  2416426 ttatgttagtagataaactcaaataagtcaatctaaacatgccctaat 2416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 15370297 - 15370239
Alignment:
Q  67 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    |||||||| || ||||||||||| | |||||||||||||||||  ||||||||||||||    
T  15370297 aacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 32821858 - 32821961
Alignment:
Q  19 aaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatcca 118  Q
    |||| ||||||||||| ||| ||| ||| |||||||||| ||||||  ||||||||| | |||||||| | |  |||||||||||||||||  ||||| |    
T  32821858 aaaacagcttatggacatgtcataagtt-gtttctataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaataagtcaatcta 32821956  T
Q  119 aacag 123  Q
    |||||    
T  32821957 aacag 32821961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 33503105 - 33503153
Alignment:
Q  78 caatgcttatgctaatagataagctcaaataaaacaatccaaacaggct 126  Q
    |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  33503105 caatgcttatgctagtagataagctcaaataagccaatacaaacaggct 33503153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 9395245 - 9395280
Alignment:
Q  145 tgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    |||||||||||||||||||||||||||||| |||||    
T  9395245 tgctagtaaataagctcaaataagtcaatccaaaca 9395280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 11513992 - 11514047
Alignment:
Q  67 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    |||||||| || | ||||||||||| ||||||| |||||||||| |||||||||||    
T  11513992 aacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 14302918 - 14302961
Alignment:
Q  67 aacagtcttaccaatgcttatgctaatagataagctcaaataaa 110  Q
    |||||||| || |||| |||||||||||||||||||||||||||    
T  14302918 aacagtctcacaaatgtttatgctaatagataagctcaaataaa 14302961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 6772478 - 6772444
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccctaa 188  Q
    ||||||||||||||||||||| |||||||||||||    
T  6772478 ataagctcaaataagtcaatccaaacatgccctaa 6772444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 10285970 - 10286012
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    ||||||||| |||||||||||| |||||| |||||||||||||    
T  10285970 tgcttatgcaaatagataagcttaaataagacaatccaaacag 10286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 35378489 - 35378443
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 188  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||||    
T  35378489 ttatgctattatataagctcaaataagccaatccaaacatgccctaa 35378443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 37448734 - 37448696
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  37448734 ttatgctggtagataagctcaaataagtcaatctaaaca 37448696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 3458707 - 3458747
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaacat 181  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  3458707 tttatgccagtaagtaagctcaaataagtcaatcttaacat 3458747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 40759270 - 40759314
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||    
T  40759270 tgcttatgtcaatagataagctcaaataaggcaatccaaacaggc 40759314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 42868437 - 42868397
Alignment:
Q  85 tatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  42868437 tatgccaatagataagctcaaataaggcaatccaaacaggc 42868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 42556563 - 42556525
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaaca 180  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42556563 ttatgctagtatataagctcaaataagtcaatctaaaca 42556525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 12763419 - 12763475
Alignment:
Q  67 aacagtcttaccaatgcttatgctaatagataagctc-aaataaaacaatccaaaca 122  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||||||    
T  12763419 aacagtcttacaaatgcttatgctaatagataaactcaaaataagccaatccaaaca 12763475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 11695975 - 11696021
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 189  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  11695975 ttatgctaataaataagctcaaataagtcaatccaaaca-gccctaat 11696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 4549536 - 4549462
Alignment:
Q  46 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaa 120  Q
    ||||||||||||||||| |  |||||||| |  ||||||||||| | ||||||| |||||||||  |||||||||    
T  4549536 ttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 28467548 - 28467586
Alignment:
Q  144 atgctagtaaataagctcaaataagtcaatctaaacatg 182  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28467548 atgctagtaaataaactcaaataagtcaatccaaacatg 28467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 37631517 - 37631475
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||||||||| |||||||||||  ||||||||||||||    
T  37631517 cttatgctaatagatgagctcaaataagccaatccaaacaggc 37631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 24279861 - 24279898
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaa 178  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  24279861 tttatgctagtaaataagttcaaataagacaatctaaa 24279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 1662686 - 1662722
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaa 178  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1662686 ttatgctagtagataagctcaaataagccaatctaaa 1662722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 11695974 - 11696014
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  11695974 cttatgctaataaataagctcaaataagtcaatccaaacag 11696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 29723602 - 29723634
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatc 174  Q
    |||||||||||||||||||||||| ||||||||    
T  29723602 ttatgctagtaaataagctcaaattagtcaatc 29723634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 8010432 - 8010509
Alignment:
Q  46 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    ||||||||||||||||| | | || |||| || |||| |||||| |||||||||||||| ||||  ||||||||||||    
T  8010432 ttgtttctataagctctcctggactgtctcacaaatgtttatgccaatagataagctcacataagtcaatccaaacag 8010509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 29249513 - 29249550
Alignment:
Q  149 agtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29249513 agtaaataagctcaaataagtcaatccaaacatgccct 29249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 31461756 - 31461829
Alignment:
Q  55 taagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggctta 128  Q
    |||||||||  ||||||||| || | | ||||||| |||||||||||||||||||| | || ||||||||||||    
T  31461756 taagctcttgcgaacagtctcacaagtacttatgcaaatagataagctcaaataaaccgatgcaaacaggctta 31461829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 103542 - 103585
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacaggct 126  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  103542 cttatgctaatatataagctcaaataagtcaatccaaacaggct 103585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 835219 - 835179
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacag 123  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  835219 cttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 5977042 - 5977078
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaa 178  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  5977042 ttatgctagtagataagctcgaataagtcaatctaaa 5977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 12111077 - 12111121
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  12111077 tgcttatgctagtagataagctcaaataagtcaatccaaataggc 12111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 12111080 - 12111112
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatc 174  Q
    ||||||||||| |||||||||||||||||||||    
T  12111080 ttatgctagtagataagctcaaataagtcaatc 12111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 31338090 - 31338122
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatc 174  Q
    ||||||||||| |||||||||||||||||||||    
T  31338090 ttatgctagtagataagctcaaataagtcaatc 31338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 9174928 - 9174973
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||    
T  9174928 tttatgctaatagataagctcaaataagtcaatccaaacatgccct 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 31723903 - 31723950
Alignment:
Q  127 tagtctcattggtctttatgctagtaaataagctcaaataagtcaatc 174  Q
    |||||||||  || |||||||||||| |||||||||||||||||||||    
T  31723903 tagtctcataagtgtttatgctagtacataagctcaaataagtcaatc 31723950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 36326104 - 36326159
Alignment:
Q  67 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    |||| ||| |||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  36326104 aacaatctcaccagtgcttatgccaatagataagctaaaataagacaatccaaaca 36326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 1899265 - 1899295
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtca 171  Q
    |||||||||||||||||||||||||||||||    
T  1899265 tttatgctagtaaataagctcaaataagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 9174929 - 9174967
Alignment:
Q  84 ttatgctaatagataagctcaaataaaacaatccaaaca 122  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  9174929 ttatgctaatagataagctcaaataagtcaatccaaaca 9174967  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 34736472 - 34736434
Alignment:
Q  154 ataagctcaaataagtcaatctaaacatgccctaattgg 192  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  34736472 ataagctcaaataagtcaatccaaacatgccctatttgg 34736434  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 8651310 - 8651265
Alignment:
Q  141 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||    
T  8651310 tttatgctagaagataagctcaaataaggcaatccaaacatgccct 8651265  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 11457152 - 11457236
Alignment:
Q  24 agcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 109  Q
    ||||||||||| ||| ||| ||| ||||| |||||||||||  |||||||| || | || || ||| |||||||||||||||||||    
T  11457152 agcttatggacatgtcataagtt-gtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataa 11457236  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 16937841 - 16937800
Alignment:
Q  83 cttatgctaatagataagctcaaataaaacaatccaaacagg 124  Q
    ||||||||| |||||||||||||||||  |||||||||||||    
T  16937841 cttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 6938693 - 6938649
Alignment:
Q  81 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 125  Q
    ||||||||||| |||||||||||||||||   |||||||||||||    
T  6938693 tgcttatgctagtagataagctcaaataacctaatccaaacaggc 6938649  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 7705955 - 7705911
Alignment:
Q  142 ttatgctagtaaataagctcaaataagtcaatctaaacatgccct 186  Q
    ||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  7705955 ttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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