View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_61 (Length: 299)
Name: NF7550_low_61
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 28926397 - 28926646
Alignment:
| Q |
15 |
aatattcaaatatataaatccccttgaaagacaaaatagaaacaataatgtagttaactgcagaaaaaataatcttaaacatgcaatctaactgatagaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28926397 |
aatattcaaatatataaatccccttgaaagacaaaatagaaacaataatgtagttaactgcagaaaaaataatcttaaacatgcaatctaactaatagaa |
28926496 |
T |
|
| Q |
115 |
agattttttatgg--aaagtgttggtttatggaatctatgtttcgaggactctcttgattccaa-ctcttagcaatgcttctgcatctcagattcctctt |
211 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28926497 |
agatttcttatggaaaaagtgttggtttatggaatctatgtttcgaggactctcttgattccaatctcttagcaatgcttctgcatctcagattcctctt |
28926596 |
T |
|
| Q |
212 |
gcttttgtatcttccaccttgctttttctgcaaaacccaacatctataac |
261 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28926597 |
gcttttgtatctcccaccttgctttttctgtaaaacccaacatctataac |
28926646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 14286373 - 14286447
Alignment:
| Q |
189 |
cttctgcatctcagattcctcttgcttttgtatcttccaccttgctttttctgcaaaacccaacatctataactt |
263 |
Q |
| |
|
|||||||||| |||||||| | ||| | ||| | |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
14286373 |
cttctgcatcacagattccaatagctctcgtaccctccaccattccttttctgcaaaacccaacatctataactt |
14286447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 7120370 - 7120246
Alignment:
| Q |
161 |
actctcttgattccaa-ctcttagcaatgcttctgcatctcagattcctcttgcttttgtatcttccaccttgctttttctgcaaaacccaacatctata |
259 |
Q |
| |
|
|||||| ||||||||| |||||||||| |||||||||| || |||| || |||||||||| ||| | ||| ||||||||||||| |||||| |||| |
|
|
| T |
7120370 |
actctcctgattccaatctcttagcaaaacttctgcatcacaaattcttccaacttttgtatccaccatcatgccttttctgcaaaactcaacatgtata |
7120271 |
T |
|
| Q |
260 |
acttttattcacgtgtgaacttggt |
284 |
Q |
| |
|
|||| || || ||||||||||||| |
|
|
| T |
7120270 |
acttctactcttgtgtgaacttggt |
7120246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 7233468 - 7233412
Alignment:
| Q |
213 |
cttttgtatcttccaccttgctttttctgcaaaacccaacatctataacttttattc |
269 |
Q |
| |
|
||||||||| |||||| | |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
7233468 |
cttttgtattctccaccatcctttttttgcaaaacccaacatctataacttctattc |
7233412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University