View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_63 (Length: 297)
Name: NF7550_low_63
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 36219154 - 36218872
Alignment:
| Q |
8 |
atggagttaaagggtcaccttcctttaggcctatttgaatattaatttcgtccgtatgatttccattaacaaggatagacatgttttcccaaatacacaa |
107 |
Q |
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| T |
36219154 |
atggaattaaaggatcaccttcctttaggcctatttgaatattaatttcctccgtatgatttccattaacaaggatagacatgttttcccaaatacacaa |
36219055 |
T |
|
| Q |
108 |
gccctcatgcaaattacccatttatttcaaaaacccacccgtctcatcatatatt----nnnnnnnnntcaaatcaaatcaaca----atgtacattttc |
199 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||| |
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| T |
36219054 |
gccctcatccaaatcacccatttatttcaaaaacccacccgtctcatcatatactaaaaaaaataaaaaaaaatcaaatcaacaagttatacacattttc |
36218955 |
T |
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| Q |
200 |
aaaactgatctttgaaatcaaacattcacgcttcaatttactcgccatattgacctattcatttaccaaaaccaccccatatc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
36218954 |
aaaactgatctttgaaatcaaacattcacgcttcaatttactcgtcatatcgacctattcatttaccaaaaccaccccatatc |
36218872 |
T |
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