View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_64 (Length: 281)
Name: NF7550_low_64
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 3011826 - 3012099
Alignment:
| Q |
13 |
aatatgtcattactacgtttgctggaggacacaattttcgtgtagactctaggaactcatcaatttagaatattaattggacacaactcgatcccatata |
112 |
Q |
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| T |
3011826 |
aatatgtcattactacgtttgttggaggacgcaattttcgtgtagactctgggaactcatcaatttagaatattaattggacacaacttgatcccatata |
3011925 |
T |
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| Q |
113 |
cgagttggttctgtttgttaacattagtgattcaattatctgtttcaggcaagtgttgtatgatggtaatgttacaatgtgtgaattttaatttatcata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
3011926 |
cgagttggttctgtttgttaacattagtgattcaattatgtgtttcagacacgtgttgtatgatggtaatgttataatgtgtaaattttaatttatcata |
3012025 |
T |
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| Q |
213 |
tttaatcgggt-------gaaaaatcggtttaagagtgtgtgagtatctcttaaagtgaatgttttatattaatat |
281 |
Q |
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| T |
3012026 |
ttcaatcgggtttgatccgaaaaatcggtttaagagtgtgcgag--tctcttaaagtgaatgttttatattaatat |
3012099 |
T |
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