View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_67 (Length: 274)

Name: NF7550_low_67
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_67
NF7550_low_67
[»] chr1 (13 HSPs)
chr1 (19-274)||(4511362-4511615)
chr1 (37-120)||(11238019-11238100)
chr1 (15-54)||(22869917-22869956)
chr1 (87-121)||(50575972-50576006)
chr1 (85-134)||(19866544-19866593)
chr1 (37-112)||(2643814-2643887)
chr1 (37-119)||(9768801-9768881)
chr1 (87-121)||(1721211-1721245)
chr1 (20-120)||(2903018-2903116)
chr1 (85-134)||(33844686-33844735)
chr1 (85-134)||(33949243-33949292)
chr1 (85-129)||(3553263-3553307)
chr1 (68-120)||(52765721-52765773)
[»] chr6 (3 HSPs)
chr6 (17-118)||(30668177-30668276)
chr6 (40-101)||(18247542-18247601)
chr6 (85-134)||(26669636-26669685)
[»] chr5 (8 HSPs)
chr5 (40-120)||(37986858-37986936)
chr5 (17-58)||(22867043-22867084)
chr5 (17-120)||(28537138-28537239)
chr5 (85-129)||(40384320-40384364)
chr5 (68-114)||(22687878-22687924)
chr5 (72-114)||(33599965-33600007)
chr5 (84-114)||(39684306-39684336)
chr5 (37-120)||(31556841-31556922)
[»] chr4 (6 HSPs)
chr4 (87-134)||(23226682-23226729)
chr4 (84-129)||(20610807-20610852)
chr4 (37-120)||(49319416-49319498)
chr4 (19-57)||(3465898-3465936)
chr4 (37-125)||(33076553-33076638)
chr4 (72-129)||(40051283-40051340)
[»] chr7 (5 HSPs)
chr7 (72-114)||(41000816-41000858)
chr7 (68-134)||(7392283-7392349)
chr7 (68-114)||(28968680-28968726)
chr7 (37-114)||(32814850-32814925)
chr7 (19-114)||(10020466-10020559)
[»] chr2 (11 HSPs)
chr2 (37-114)||(44487764-44487839)
chr2 (37-117)||(31088991-31089069)
chr2 (37-119)||(4529755-4529835)
chr2 (72-114)||(2057535-2057577)
chr2 (85-114)||(2971138-2971167)
chr2 (63-104)||(7889305-7889346)
chr2 (85-114)||(9418978-9419007)
chr2 (72-129)||(39118449-39118506)
chr2 (85-129)||(1244638-1244682)
chr2 (37-120)||(14307685-14307766)
chr2 (90-134)||(33124342-33124386)
[»] scaffold0002 (1 HSPs)
scaffold0002 (38-114)||(440423-440497)
[»] chr8 (6 HSPs)
chr8 (62-114)||(19925096-19925148)
chr8 (85-124)||(18123930-18123969)
chr8 (17-114)||(7345431-7345526)
chr8 (87-120)||(22847253-22847286)
chr8 (87-120)||(27821896-27821929)
chr8 (86-114)||(22438581-22438609)
[»] chr3 (10 HSPs)
chr3 (38-129)||(4478350-4478439)
chr3 (19-58)||(26583106-26583145)
chr3 (62-121)||(32080101-32080160)
chr3 (17-129)||(3955308-3955419)
chr3 (17-114)||(28951869-28951964)
chr3 (17-58)||(6951841-6951882)
chr3 (17-129)||(21248972-21249081)
chr3 (85-114)||(47497147-47497176)
chr3 (68-120)||(40160787-40160839)
chr3 (88-120)||(44592071-44592103)
[»] scaffold0119 (1 HSPs)
scaffold0119 (85-134)||(1108-1157)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 4511615 - 4511362
Alignment:
Q  19 cataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatag 118  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||  |||||||||||||||| |||||||||||||||||||||||||||||||||| ||     
T  4511615 cataactcaattggcaaggacatgcattattatatgcaggggt--cggtgtttgaatcccggacgtcccacttattcaccttaaaaaaggtgaattctaa 4511518  T
Q  119 ccgctatactaattgatnnnnnnnncacaactcaaatgtagtatttaactcggtaccgattgaggctttaagaaaaacacataagtcaaatgtgacattt 218  Q
    || ||||||||||||||        || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4511517 ccactatactaattgatagaaaaaacataactcaaatgtagtatttaacccggtaccgattgaggctttaagaaaaacacataagtcaaatgtgacattt 4511418  T
Q  219 aatttgagatgaagtgagtacttattggaaataggaacgtgtaggctattttgttt 274  Q
    |||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  4511417 aatttgagatgaagtgggtacttattggaaataggcaagtgtatgctattttgttt 4511362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 11238100 - 11238019
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||||||||||||||| ||  ||| ||| |||||||| ||  |||||||||||| ||| ||||||||||||| |||||    
T  11238100 gacatgcattattatatgcaggggt--cggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaattctagcc 11238019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 22869956 - 22869917
Alignment:
Q  15 tcagcataactcaattgacaatgacatgcattattatatg 54  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  22869956 tcagcataactcaattaacaatgacatgcattattatatg 22869917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 50575972 - 50576006
Alignment:
Q  87 cacttattcaccttaaaaaaggtgaattatagccg 121  Q
    |||||||||||||||||||||||||||||||||||    
T  50575972 cacttattcaccttaaaaaaggtgaattatagccg 50576006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 19866544 - 19866593
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||| ||||    
T  19866544 cccacttattcaccttaaaaaaggtgaattctagccactaaactacttga 19866593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 2643887 - 2643814
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaa 112  Q
    ||||||||||||||||||||  || ||||| ||||||| |||  ||  |||||||||||||||||||||| |||||    
T  2643887 gacatgcattattatatgca--tgggtcggggtttgaaccccagacaccccacttattcaccttaaaaaatgtgaa 2643814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 9768881 - 9768801
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagc 119  Q
    |||||||||| ||||||||||| ||  ||| ||| ||| |||| ||  |||||||||||||||| ||||||||||||| ||||    
T  9768881 gacatgcattgttatatgcaggggt--cggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagc 9768801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 1721211 - 1721245
Alignment:
Q  87 cacttattcaccttaaaaaaggtgaattatagccg 121  Q
    |||||||||||||||||||||||||||| ||||||    
T  1721211 cacttattcaccttaaaaaaggtgaattctagccg 1721245  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 2903116 - 2903018
Alignment:
Q  20 ataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagc 119  Q
    |||||||| ||| ||  |||||||||| ||||||||||  ||  ||| ||| ||| |||||||  |||||||||||||||| ||||||| ||||| ||||    
T  2903116 ataactcagttgccagggacatgcattgttatatgcagaggt--cggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaattctagc 2903019  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 33844686 - 33844735
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    ||||||||||||| || ||||||||||||||||||| ||| |||| ||||    
T  33844686 cccacttattcactttgaaaaaggtgaattatagccactagactacttga 33844735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 33949292 - 33949243
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    ||||||||||||| || ||||||||||||||||||| ||| |||| ||||    
T  33949292 cccacttattcactttgaaaaaggtgaattatagccactagactacttga 33949243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 3553307 - 3553263
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    ||||| |||||||||||||||| ||||||||||||| ||| ||||    
T  3553307 cccacgtattcaccttaaaaaaagtgaattatagccactaaacta 3553263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 52765773 - 52765721
Alignment:
Q  68 gtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||||| || || ||||||||||| | |||||||||||||| |||||    
T  52765773 gtttgaatcccggacatctcacttattcacttaaaaaaaggtgaattctagcc 52765721  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 30668276 - 30668177
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattat 116  Q
    ||||||||||| ||| ||  |||||||||||||||||||||| ||  | | ||| ||| | |||||  |||||||||||||||||||||| |||||||||    
T  30668276 agcataactcagttggcatagacatgcattattatatgcaggggt--cagagttcgaaccacgaacaccccacttattcaccttaaaaaatgtgaattat 30668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 18247542 - 18247601
Alignment:
Q  40 atgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcacctta 101  Q
    ||||||||||||||||||| || |||| ||||||||||||||| || |||||||||| ||||    
T  18247542 atgcattattatatgcagg-gt-tcggggtttgaatcccgaacatctcacttattcatctta 18247601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 26669685 - 26669636
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    |||||||||||||||| ||||||||||||| ||||| ||| |||| ||||    
T  26669685 cccacttattcaccttgaaaaaggtgaattctagccactaaactacttga 26669636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 37986936 - 37986858
Alignment:
Q  40 atgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    ||||||||||||||||||  ||  ||| ||||||| |||| || ||||||||||||||||| ||||||||||||| |||||    
T  37986936 atgcattattatatgcagaggt--cggagtttgaaccccggacatcccacttattcaccttgaaaaaggtgaattctagcc 37986858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 22867084 - 22867043
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcagg 58  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  22867084 agcataactcagttgacaaggacatgcattattatatgcagg 22867043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 28537138 - 28537239
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattat 116  Q
    ||||||||||||||||||  |||||||||| |||||||||  || | ||| ||| ||| |||| ||  ||||||||||||| || |||| |||||||| |    
T  28537138 agcataactcaattgacatggacatgcattgttatatgca--tgggccggggttcgaaccccggacaccccacttattcactttgaaaatggtgaattct 28537235  T
Q  117 agcc 120  Q
    ||||    
T  28537236 agcc 28537239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 40384320 - 40384364
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||    
T  40384320 cccacttattcaccttaaaaaaggtgaattctagccactaaacta 40384364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 22687924 - 22687878
Alignment:
Q  68 gtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||| |||||||  |||||||||||||||| |||||||||||||    
T  22687924 gtttgaaccccgaacaccccacttattcaccttgaaaaaggtgaatt 22687878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 33599965 - 33600007
Alignment:
Q  72 gaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||| || |||||||||||||||||||||||||| ||||    
T  33599965 gaatcccggacatcccacttattcaccttaaaaaaggtaaatt 33600007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 39684306 - 39684336
Alignment:
Q  84 tcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||||||||||||||||||||||||||    
T  39684306 tcccacttattcaccttaaaaaaggtgaatt 39684336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 31556841 - 31556922
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||| ||||||||||| ||  ||| ||| ||| |||| ||  |||||||||||||||| |||| |||||||| |||||    
T  31556841 gacatgcattgttatatgcaggggt--cggagttcgaaccccggacaccccacttattcaccttgaaaagggtgaattctagcc 31556922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 23226729 - 23226682
Alignment:
Q  87 cacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  23226729 cacttattcaccttaaaaaatgtgaattatagccactatactacttga 23226682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 20610807 - 20610852
Alignment:
Q  84 tcccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  20610807 tcccacttattcaccttaaaaaaggtgaattctagccactagacta 20610852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 49319416 - 49319498
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcacctt-aaaaaaggtgaattatagcc 120  Q
    |||||||||||||||||||||| ||  ||| |||  || |||| ||  |||||||||||||||| ||||||||||||||||||||    
T  49319416 gacatgcattattatatgcaggggt--cggggttccaaccccggacaccccacttattcaccttgaaaaaaggtgaattatagcc 49319498  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 3465936 - 3465898
Alignment:
Q  19 cataactcaattgacaatgacatgcattattatatgcag 57  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  3465936 cataactcagttgacaaagacatgcattattatatgcag 3465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 33076553 - 33076638
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccgctat 125  Q
    |||||||||||||||||||||  | ||||| ||| ||| |||| ||  || ||||||||||||| |||||| |||||||||||| ||||    
T  33076553 gacatgcattattatatgcag--gggtcggggttcgaaccccggacaccctacttattcacctt-aaaaagatgaattatagccactat 33076638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 40051340 - 40051283
Alignment:
Q  72 gaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    |||||||||||  |||||||||||||||||||||||  ||||| || || ||||||||    
T  40051340 gaatcccgaacaccccacttattcaccttaaaaaagaagaattctaaccactatacta 40051283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 41000816 - 41000858
Alignment:
Q  72 gaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||| ||||||||||||||||||||||| |||||||    
T  41000816 gaatcccgaacatcccacttattcaccttaaaaaatgtgaatt 41000858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 7392349 - 7392283
Alignment:
Q  68 gtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    ||||||| |||||||  |||||||||||||||| |||||  |||||||||||| ||| |||| ||||    
T  7392349 gtttgaaccccgaacaccccacttattcaccttgaaaaatatgaattatagccactaaactacttga 7392283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 28968726 - 28968680
Alignment:
Q  68 gtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||||    
T  28968726 gtttgaaccccgaacatctcacttattcaccttgaaaaaggtgaatt 28968680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 32814850 - 32814925
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||||||||||||||||  | ||||| ||| |||||||| ||  ||||||||||||  | ||||||||||||||    
T  32814850 gacatgcattattatatgcag--gggtcggagttcgaatcccggacaccccacttattcatataaaaaaaggtgaatt 32814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 10020559 - 10020466
Alignment:
Q  19 cataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||| |||| ||||||  |||||||||| ||||||||||| ||   || ||| ||| |||||||  |||||||||||| ||| |||||||||||||    
T  10020559 catagctcagttgacagggacatgcattgttatatgcaggggtt--ggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaatt 10020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 44487839 - 44487764
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||||||||||||||| | |   ||| ||| ||| |||| || |||||||||||||||||||||||||||||||    
T  44487839 gacatgcattattatatgcaagggc--cggagttcgaaccccggacatcccacttattcaccttaaaaaaggtgaatt 44487764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 31089069 - 31088991
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattata 117  Q
    ||||||||||||| |||| ||| ||  ||| ||||||||||||||| |||||||||||| | || ||||| ||||||||||    
T  31089069 gacatgcattattttatgtaggggt--cggagtttgaatcccgaacatcccacttattcgctttgaaaaaagtgaattata 31088991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 4529835 - 4529755
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagc 119  Q
    |||||||||||||||||||||| ||  ||| ||| |||  ||||||  ||||||||||||| || ||||||||||||| ||||    
T  4529835 gacatgcattattatatgcaggggt--cggagttcgaactccgaacaccccacttattcactttgaaaaaggtgaattttagc 4529755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 2057535 - 2057577
Alignment:
Q  72 gaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||| ||  ||||||||||||||||||||||||||||||    
T  2057535 gaatcccggacaccccacttattcaccttaaaaaaggtgaatt 2057577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 2971167 - 2971138
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||||||||||||||||||||||    
T  2971167 cccacttattcaccttaaaaaaggtgaatt 2971138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 7889305 - 7889346
Alignment:
Q  63 tcggtgtttgaatcccgaacgtcccacttattcaccttaaaa 104  Q
    |||||||| ||| ||||||||||||| |||||||||||||||    
T  7889305 tcggtgttcgaaccccgaacgtcccatttattcaccttaaaa 7889346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 9419007 - 9418978
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||||||||||||||||||||||    
T  9419007 cccacttattcaccttaaaaaaggtgaatt 9418978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 39118449 - 39118506
Alignment:
Q  72 gaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    |||||||||||  ||||||||||| |||||||||||| ||||| ||||| ||| ||||    
T  39118449 gaatcccgaacaccccacttattctccttaaaaaaggagaattctagccactagacta 39118506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 1244638 - 1244682
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    |||||||||||||||| ||||||||||||| ||||| ||| ||||    
T  1244638 cccacttattcaccttgaaaaaggtgaattctagccactagacta 1244682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 14307766 - 14307685
Alignment:
Q  37 gacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||| ||||||||||| ||  ||  ||| ||| |||||||  ||||||||||||| |||||||| ||||||| |||||    
T  14307766 gacatgcattgttatatgcaggggt--cgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaattctagcc 14307685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 33124386 - 33124342
Alignment:
Q  90 ttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    ||||||||||||||||||||||||| || || |||||||| ||||    
T  33124386 ttattcaccttaaaaaaggtgaattctaaccactatactacttga 33124342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 440423 - 440497
Alignment:
Q  38 acatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||||||||| ||| |   ||| ||| || ||||||||  ||||||||||||||||||||||||||||||    
T  440423 acatgcattattatatgtaggggc--cggggttcgactcccgaacaccccacttattcaccttaaaaaaggtgaatt 440497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 19925148 - 19925096
Alignment:
Q  62 gtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||| ||| |||||||||||  | ||||||||||||||||||||||||||||    
T  19925148 gtcggggttcgaatcccgaacacctcacttattcaccttaaaaaaggtgaatt 19925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 18123930 - 18123969
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgcta 124  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  18123930 cccacttattctccttaaaaaaggtgaattctagccgcta 18123969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 7345431 - 7345526
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||| ||| ||  |||||||||||||||||||||| ||  |||  ||  ||  || |||  ||||||||||||||||||||||||||||||    
T  7345431 agcataactcagttggcagggacatgcattattatatgcaggggt--cgggcttccaactccaaacaccccacttattcaccttaaaaaaggtgaatt 7345526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 22847286 - 22847253
Alignment:
Q  87 cacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||||||||||||||||||||| |||||    
T  22847286 cacttattcaccttaaaaaaggtgaattctagcc 22847253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 27821929 - 27821896
Alignment:
Q  87 cacttattcaccttaaaaaaggtgaattatagcc 120  Q
    |||||||||||||||||||||||||||| |||||    
T  27821929 cacttattcaccttaaaaaaggtgaattctagcc 27821896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 22438609 - 22438581
Alignment:
Q  86 ccacttattcaccttaaaaaaggtgaatt 114  Q
    |||||||||||||||||||||||||||||    
T  22438609 ccacttattcaccttaaaaaaggtgaatt 22438581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 4478439 - 4478350
Alignment:
Q  38 acatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccgctatacta 129  Q
    ||||||||||||||||||||| ||  ||| ||| |||||||| || ||||||||||||| ||| ||||| || |||| ||||| ||| ||||    
T  4478439 acatgcattattatatgcaggggt--cggggttcgaatcccggacatcccacttattcatctttaaaaatgtaaattttagccactagacta 4478350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 26583106 - 26583145
Alignment:
Q  19 cataactcaattgacaatgacatgcattattatatgcagg 58  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  26583106 cataactcaattgacagggacatgcattattatatgcagg 26583145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32080101 - 32080160
Alignment:
Q  62 gtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagccg 121  Q
    ||||| ||| ||| |||||||  |||||||||||||||| ||||||||||||| ||||||    
T  32080101 gtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaattctagccg 32080160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 3955308 - 3955419
Alignment:
Q  17 agcataactcaattgacaatgaca-tgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatta 115  Q
    |||||| |||||||||||  |||| |||||||||||||||||| | | ||| ||| ||| |||| ||  ||||||||||||| |||||||  |||||||     
T  3955308 agcatagctcaattgacagggacaatgcattattatatgcaggggggccggggttcgaaccccggacaccccacttattcactttaaaaa--gtgaattc 3955405  T
Q  116 tagccgctatacta 129  Q
    ||||| ||| ||||    
T  3955406 tagccactaaacta 3955419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 28951869 - 28951964
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||| ||| ||   ||||||||||||||||||||| ||  | | ||| ||| |||||||  |||||||||||||||| ||||| |||||||    
T  28951869 agcataactcagttggcagatacatgcattattatatgcaggggt--cagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaatt 28951964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6951882 - 6951841
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcagg 58  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  6951882 agcataactcagttgacagggacatgcattattatatgcagg 6951841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 21249081 - 21248972
Alignment:
Q  17 agcataactcaattgacaatgacatgcattattatatgcaggtgtgtcggtgtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattat 116  Q
    |||||| |||| ||||||  |||||| ||||||||||||||| |   ||| ||| ||| || ||||  |||||||||||||||| ||||||||||||| |    
T  21249081 agcatagctcagttgacagagacatg-attattatatgcaggggc--cggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaattct 21248985  T
Q  117 agccgctatacta 129  Q
    |||| ||| ||||    
T  21248984 agccactagacta 21248972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 47497147 - 47497176
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaatt 114  Q
    ||||||||||||||||||||||||||||||    
T  47497147 cccacttattcaccttaaaaaaggtgaatt 47497176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 40160787 - 40160839
Alignment:
Q  68 gtttgaatcccgaacgtcccacttattcaccttaaaaaaggtgaattatagcc 120  Q
    ||||||| |||| ||  |||||||||||||||| ||||||||||||| |||||    
T  40160787 gtttgaaccccggacaccccacttattcacctttaaaaaggtgaattctagcc 40160839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 44592071 - 44592103
Alignment:
Q  88 acttattcaccttaaaaaaggtgaattatagcc 120  Q
    ||||||||||||| |||||||||||||||||||    
T  44592071 acttattcaccttgaaaaaggtgaattatagcc 44592103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 1108 - 1157
Alignment:
Q  85 cccacttattcaccttaaaaaaggtgaattatagccgctatactaattga 134  Q
    |||||||||||||||| ||||||||||||| ||||| ||| |||| ||||    
T  1108 cccacttattcaccttgaaaaaggtgaattctagccactaaactacttga 1157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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