View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_low_72 (Length: 260)
Name: NF7550_low_72
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_72 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 15276218 - 15276462
Alignment:
| Q |
16 |
atcaaaaggatcttaaaaatatgaatgagaataaatctgaatttttaatgaatcaacacaaaacatcacaattgcaagtgagacttcttagattggtggc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15276218 |
atcaaaaggatcttaaaaatatgaatgagaataaatctgaatttttaatgaatcaacacaaaacatcacaattgcaagtgagacttcttagattggtggc |
15276317 |
T |
|
| Q |
116 |
cattttttattgaacaaccaaatttttattattcaacatcatatatatnnnnnnnnnnnnnnnnnnnnnnncaataacattacactataaaaccggtaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15276318 |
cattttttattgaacaaccaaatttttattattcaacatcatatatataaaaaaataaataaaataaaaaacaataacattacactataaaactggtaac |
15276417 |
T |
|
| Q |
216 |
atagacaccctgtcgaatttgctgttgtacaaacgattatttcaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15276418 |
atagacaccctgtcgaatttgctgttgtacaaacgattatttcaa |
15276462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 479337 - 479269
Alignment:
| Q |
16 |
atcaaaaggatcttaaaaatatgaatgagaataaatctgaattt-ttaatgaatcaacacaaaacatca |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||| |
|
|
| T |
479337 |
atcaaaaggatcttaaaaatatgaatgagaatataactggatttcaaaatgaatcaacacaaaacatca |
479269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 15264400 - 15264433
Alignment:
| Q |
16 |
atcaaaaggatcttaaaaatatgaatgagaataa |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15264400 |
atcaaaaggatcttaaaaatatgaatgagaataa |
15264433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 43131791 - 43131819
Alignment:
| Q |
131 |
aaccaaatttttattattcaacatcatat |
159 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43131791 |
aaccaaatttttattattcaacatcatat |
43131819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University