View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_73 (Length: 260)
Name: NF7550_low_73
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 46238377 - 46238148
Alignment:
| Q |
13 |
gacatcacaagcaaacgaaaaacttataggttgcttagcttcaatagaagtgaagtgtacacttcagatcctgctaatattgagcatatactggcgacga |
112 |
Q |
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| T |
46238377 |
gacatcacaagcaaacgaaaaatttataggttgcttagcttcaatagaagtgaagtgtacacttcagatcctgctaatattgagcatatactggcgacga |
46238278 |
T |
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| Q |
113 |
acttctcaaactatggcaaggtataactcatagttactaataagtcgacatgtcattaaagcgagaatgttccccctaggtttggcccaaacatttgttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238277 |
acttctcaaactatggcaaggtataactcatagttactaatacgtcgacatgtcattaaagcgagaatgttccccctaggtttggcccaaacatttgttg |
46238178 |
T |
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| Q |
213 |
gactgcgaccggggtgctggaggcaacttc |
242 |
Q |
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| T |
46238177 |
gactgcgaccggggtgctggaggcaacttc |
46238148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 46164813 - 46165010
Alignment:
| Q |
17 |
tcacaagcaaacgaaaaacttataggttgcttagcttcaatagaagtgaagtgtacacttcagatcctgctaatattgagcatatactggcgacgaactt |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46164813 |
tcacaagcaaaagaaaaacttataggttgcttagctttaatagaagtgaagtgtacacttcagatcctgctaatattgagcatatgatggcgacgaactt |
46164912 |
T |
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| Q |
117 |
ctcaaactatggcaaggtataactcatagttactaataagtcgacatgtcattaaagcgagaatgttccccctaggtttggcccaaacatttgttgga |
214 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||| |||||| | ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
46164913 |
ctcaaactatggcaaggtataactcgtagttactaataaatcgatatgtcacttaagatagaatgttccccctaggtttggcccaaacttttgttgga |
46165010 |
T |
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