View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_75 (Length: 254)
Name: NF7550_low_75
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_75 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 7129424 - 7129171
Alignment:
| Q |
1 |
aaacttccaagattggattggaatcttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaatgcaaaggagacaaattt |
100 |
Q |
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| T |
7129424 |
aaacttccaagattggattggaatcttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaacgcaaaggagacaaattt |
7129325 |
T |
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| Q |
101 |
ctatgaattagacttattgatttgtacatacactgccaattatctaatctcacttcaccaagagaacgaataacagacccaccactgcattgtaccattc |
200 |
Q |
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| T |
7129324 |
ctatgaattagacttatcgatttgtacatccactgccaattatctaatctcacttcaccaagagaacgaataacagacccaccactgccttgtagcattc |
7129225 |
T |
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| Q |
201 |
ttcaagtgataaacctttgacatctacatacaaaaatatcattcccctgcttct |
254 |
Q |
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| T |
7129224 |
ttcaagtgataaacctttgacatctacatacaaaaatatcagtcccctgcttct |
7129171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 3408710 - 3408932
Alignment:
| Q |
26 |
ttggaacaacaaccggcatttgatttaatggtaaagagatgacttgtaaaggaagaatgcaaaggag--acaaatttctatgaattagacttattgattt |
123 |
Q |
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| T |
3408710 |
ttggaacaacaaccggcatttgattta--ggtaaagagacgacttgaaaaggaagaatgcaaaggaggaacaaatttctataaagtagacttattaattt |
3408807 |
T |
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| Q |
124 |
gtacatacactgccaattatctaatctcacttcaccaagagaacgaataacagacccaccactg----------cattgtaccattcttcaagtgataaa |
213 |
Q |
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| T |
3408808 |
gtacatccaccgtcaattatctaatgtcacttcaccaagagaacgaataacagacccatcactgcatgcccccacattgcagcattcttcaagtgataaa |
3408907 |
T |
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| Q |
214 |
cctttgacatctacatacaaaaata |
238 |
Q |
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| T |
3408908 |
cctttgacaactacatacaaaaata |
3408932 |
T |
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