View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_77 (Length: 251)
Name: NF7550_low_77
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_77 |
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| [»] chr3 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 33331747 - 33331985
Alignment:
| Q |
13 |
aatatatgcagaaatttagactcttaaacactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaactt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33331747 |
aatatatgcagaaatttagactcttaaacactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaactt |
33331846 |
T |
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| Q |
113 |
gggcccttatacatttctaattaatgtttttgggggaattgaggccatgtgccatagtcaatcttgcacatgataatggttgtccctactggtgtctgac |
212 |
Q |
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| T |
33331847 |
gggcccttatacatttctaattaatgtttttgggggaattgaggccatgtgccatagtctatgttgcacatgataatggttgtccctacttgtgtctgac |
33331946 |
T |
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| Q |
213 |
accaacacatgtcattacatttaatcacttttattttct |
251 |
Q |
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| T |
33331947 |
accgacacatgtaattacatttaatcacttttattttct |
33331985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 40486939 - 40486850
Alignment:
| Q |
15 |
tatatgcagaaatttagactcttaaa-cactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttga |
103 |
Q |
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| T |
40486939 |
tatatgaagaaatttagactcttaaaacactttgaagccctcaaaatttgaaatttattgctgcaattaagttaagactatcaaatttga |
40486850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 22720596 - 22720497
Alignment:
| Q |
47 |
gaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttctaattaatgtttttggg |
146 |
Q |
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| T |
22720596 |
gaagccctcaaattttaggatttattggcataattaagttcataatttcaaatttgattaaaagttgggccctcaaccatttttatttaatgtgtttggg |
22720497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 22729020 - 22728902
Alignment:
| Q |
35 |
cttaaacactttg-aagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttctaat |
133 |
Q |
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| T |
22729020 |
cttaaatactttggaagccctcaaaatttaggatttatttacataattatgttcataatttcatatttgattaatatttgggccctcaagcatttttatt |
22728921 |
T |
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| Q |
134 |
taatgtttttgggggaatt |
152 |
Q |
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| T |
22728920 |
taatgtgtttgggggaatt |
22728902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 36895421 - 36895381
Alignment:
| Q |
209 |
tgacaccaacacatgtcattacatttaatcacttttatttt |
249 |
Q |
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| T |
36895421 |
tgacaccaacacatgtgattacattcaatcacttatatttt |
36895381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 13467688 - 13467578
Alignment:
| Q |
35 |
cttaaacactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttctaatt |
134 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||||||||| |||| | ||||||| |||||||||||| || ||||||| ||||||| | || |
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| T |
13467688 |
cttaaacactttgaagccctaaaaatttgggatttgttgatataattaagttcataatttcatatttgattaaaatttaagcccttaaacatttccattt |
13467589 |
T |
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| Q |
135 |
aatgtttttgg |
145 |
Q |
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| T |
13467588 |
aatgtttttgg |
13467578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 38284961 - 38285098
Alignment:
| Q |
16 |
atatgcagaaatttagactcttaaacactttgaagcc-ctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgg |
114 |
Q |
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||||||| |||||| ||| |||||||||||| || | ||||| | ||||||||||||| |||||| |||| ||||||||| |||||||||||| |||| |
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| T |
38284961 |
atatgcaaaaatttggacccttaaacacttttgagacactcaaaacttgggatttattgccataattaagtttagaatttcagatttgattaaaatttgg |
38285060 |
T |
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| Q |
115 |
gcccttatacatttctaattaatgtttttgggggaatt |
152 |
Q |
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| T |
38285061 |
ccccttgaacatttttatttaatgtttttggaggaatt |
38285098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 5590532 - 5590650
Alignment:
| Q |
35 |
cttaaacactttg-aagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttctaat |
133 |
Q |
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|||||| |||||| |||||||||| |||| ||||||||| | |||||| ||| | ||||||| |||||||||| | ||||||||| | ||||| || | |
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| T |
5590532 |
cttaaatactttggaagccctcaaaatttaggatttatttacataattatgttcataatttcatatttgattaatatttgggccctcaagcatttttatt |
5590631 |
T |
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| Q |
134 |
taatgtttttgggggaatt |
152 |
Q |
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|||||| |||||||||||| |
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| T |
5590632 |
taatgtgtttgggggaatt |
5590650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 13911656 - 13911616
Alignment:
| Q |
211 |
acaccaacacatgtcattacatttaatcacttttattttct |
251 |
Q |
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| T |
13911656 |
acaccaacacatgtaattacatttgatcacatttattttct |
13911616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 9845605 - 9845471
Alignment:
| Q |
15 |
tatatgcagaaatttagactcttaaacactttgaagccctcaagatttgggatttattgatataattgagttaagaatttcaaatttga-ttaaaacttg |
113 |
Q |
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| T |
9845605 |
tatatgtagtaatttggacccttatacactttggaggcctcaaaatttggaattgattgatataaataagttaagaattttcaatttgatttaaaatttg |
9845506 |
T |
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| Q |
114 |
ggcccttatacatttctaattaatgtttttggggg |
148 |
Q |
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| T |
9845505 |
ggtagttaaacatttctatttattgtgtttggggg |
9845471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 3504675 - 3504603
Alignment:
| Q |
59 |
atttgggatttattgatataattgagttaagaatttcaaatttgattaaaacttgggcccttatacatttcta |
131 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||| ||||||| |||| | ||| ||||||||| |
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| T |
3504675 |
atttgggatttattgatataattaagttcagaatttcatatttcattaaaatttggacggttaaacatttcta |
3504603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 18304975 - 18305017
Alignment:
| Q |
209 |
tgacaccaacacatgtcattacatttaatcacttttattttct |
251 |
Q |
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| T |
18304975 |
tgacaccgatacatgtcatttcatttaatcacttttattttct |
18305017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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