View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_78 (Length: 250)
Name: NF7550_low_78
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 38447857 - 38447651
Alignment:
| Q |
15 |
tataggtaaaattccagcgccacccctgaaattgacgaaagtaattgtaaatttaacgtataannnnnnnacggaaaactattattaatattggcaacac |
114 |
Q |
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| T |
38447857 |
tataggtgaaattccagcgccacccctgaaattgacgaaagtaattgtaaatttaacgtataatttttttacagaaaactattattaatattggcaacac |
38447758 |
T |
|
| Q |
115 |
taatagatatatataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattat |
214 |
Q |
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| T |
38447757 |
taatagatgtata------------gcaatgcataatctactcacctatcaatcaatctcgaggtagtatgattgcttgtagaagtacttcccacattat |
38447670 |
T |
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| Q |
215 |
tgtagaacatatttgaatc |
233 |
Q |
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||||||||||||||||||| |
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| T |
38447669 |
tgtagaacatatttgaatc |
38447651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 38181178 - 38181145
Alignment:
| Q |
196 |
gaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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| T |
38181178 |
gaagtacttcccacattattgtagaacatgtttg |
38181145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 38189953 - 38189986
Alignment:
| Q |
196 |
gaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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| T |
38189953 |
gaagtacttcccacattattgtagaacatgtttg |
38189986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 38208402 - 38208369
Alignment:
| Q |
196 |
gaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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| T |
38208402 |
gaagtacttcccacattattgtagaacatgtttg |
38208369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 38217178 - 38217211
Alignment:
| Q |
196 |
gaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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||||||||||||||||||||||||||||| |||| |
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|
| T |
38217178 |
gaagtacttcccacattattgtagaacatgtttg |
38217211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 38456538 - 38456505
Alignment:
| Q |
196 |
gaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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||||||||||||||||||||||||||||| |||| |
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|
| T |
38456538 |
gaagtacttcccacattattgtagaacatgtttg |
38456505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 38343063 - 38342955
Alignment:
| Q |
125 |
atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacat |
224 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcccacattattgaagaacat |
38342964 |
T |
|
| Q |
225 |
atttgaatc |
233 |
Q |
| |
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||||||||| |
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| T |
38342963 |
atttgaatc |
38342955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 38447256 - 38447148
Alignment:
| Q |
125 |
atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacat |
224 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcccacattattgaagaacat |
38447157 |
T |
|
| Q |
225 |
atttgaatc |
233 |
Q |
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||||||||| |
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| T |
38447156 |
atttgaatc |
38447148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 6067706 - 6067776
Alignment:
| Q |
159 |
cctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacatatttg |
229 |
Q |
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| T |
6067706 |
cctatcaatcaatgttgaagtagtatgattgcttgtagaagtacttcccacgttattgtagaacatgtttg |
6067776 |
T |
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