View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_79 (Length: 250)
Name: NF7550_low_79
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 12911464 - 12911281
Alignment:
| Q |
50 |
cgatcatagttttgtattagtccttgaaaaatttgtatattttagaattaatcgtgtaatatatatgtgtacagtatttatcttagtttttatgtagcca |
149 |
Q |
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| T |
12911464 |
cgatcatagttttgtattagtccttgaaaattttgtatattttagaattaatcatgtaatatatatgtgtacagtatttatcttagtttttatgtagcca |
12911365 |
T |
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| Q |
150 |
ttattagaatgactaaaatcaaatactctatagaaatgccatgaacacactctacacactcccttaaacacactagcatatatt |
233 |
Q |
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| T |
12911364 |
ttattagaatgactaaaatcaaatactctaaagaaatgccatgaacacactctacacactcccttaaacacactagcatatatt |
12911281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 12927921 - 12927804
Alignment:
| Q |
58 |
gttttgtattagtccttgaaaaatttgtatattttagaattaat-cgtgtaatatatatgtgtacagtatttatcttagtttttatgtagccattattag |
156 |
Q |
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| T |
12927921 |
gttttgttttagtgcttgtgaaatttgtatatgttagaattaatccctgtaatatatacatgcataatatttattttcgtctttatgtagccgatattgg |
12927822 |
T |
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| Q |
157 |
aatgactaaaatcaaata |
174 |
Q |
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| T |
12927821 |
aatgacaaaaaccaaata |
12927804 |
T |
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