View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_8 (Length: 649)
Name: NF7550_low_8
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 281 - 632
Target Start/End: Original strand, 31573349 - 31573700
Alignment:
| Q |
281 |
tttttgtttgtacttacagaaaatgatgaaggatcttattattgaaacgaggggtatatcaatgagagagtaacgaaaatcgtagttgtggaaatgagaa |
380 |
Q |
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| T |
31573349 |
tttttgtttgtacttacagaaaatgatgaaggatcttattattgaaacgaggggtatatcaatgagagagtaacgaaaatcgtagttgtggaaatgagaa |
31573448 |
T |
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| Q |
381 |
gagagtgttgttaaggaaagagaaacaggtgaaagtgttgagagaagagctgaaggaagaagagcatcggcaataaccaatagaaccggggcagaaaata |
480 |
Q |
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| T |
31573449 |
gagagtgttgttaaggaaagagaaacaggtgaaagtgttgagagaagagctgaaggaagaagagcatcagcaataaccaatagaaccggggcagaaaata |
31573548 |
T |
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| Q |
481 |
gaagaagtgaaagaatcatagtgattaagaaaaacaaagttttcaccactcttaatattcttttagatttctcttcttttgatgaaaaacccatttcagc |
580 |
Q |
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| T |
31573549 |
gaagaagtgaaagaatcatagtgattaagaaaaacaaagttttcaccactcttaatattcttttagatttctcttctttagatgaaaaacccatttcagc |
31573648 |
T |
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| Q |
581 |
tcctttgaataataatttgcttccaattctcatgatgatgatttattataag |
632 |
Q |
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| T |
31573649 |
tcctttgaataataatttgcttccaattctcatgatgatgatttattataag |
31573700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 31573090 - 31573278
Alignment:
| Q |
23 |
cgcacaaggacacacaaacaaagcaatttctgatcctccaacatagccacttccatttccaaacacataaacagctttaaacgaaacaaataacaaagac |
122 |
Q |
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| T |
31573090 |
cgcacaagaacacacaaacaaagcaatttctgatcctccaacatagccacttccatttccaaacacataaacagctttaaacgaaacaaataacaaagac |
31573189 |
T |
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| Q |
123 |
aaaacagaacacatcgttgttatacacaaataaggtcctcttgaccgtgaaagtcttggtccatcacataaactgtaaacacctacatc |
211 |
Q |
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| T |
31573190 |
aaaacagaacacatcgttgttatacacaaataaggtcctcttgaccgtgaaagtcttggtccatcacataaactgtaaacacctacatc |
31573278 |
T |
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