View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_82 (Length: 250)
Name: NF7550_low_82
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_82 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 55959912 - 55959684
Alignment:
| Q |
13 |
aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgc |
112 |
Q |
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| T |
55959912 |
aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgc |
55959813 |
T |
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| Q |
113 |
ttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacggtgattattggagacaaat |
212 |
Q |
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| T |
55959812 |
ttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactgg----tattgtctttgctccatacggtgattattggagacaa-- |
55959719 |
T |
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| Q |
213 |
gacatgaggaaaatatgtacatcagaacttcttatatt |
250 |
Q |
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| T |
55959718 |
---atgaggaaaatatgtacatcagaacttcttatatt |
55959684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 55956463 - 55956239
Alignment:
| Q |
13 |
aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgc |
112 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| || | ||||| ||||| |||||||| |||||||||||| ||||||||| ||||||| | |
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| T |
55956463 |
aatatggacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttc |
55956364 |
T |
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| Q |
113 |
ttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacggtgattattggagacaaat |
212 |
Q |
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| T |
55956363 |
ttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaac----agatattgtttatgctccatacggtgattattggagac---- |
55956272 |
T |
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| Q |
213 |
gacatgaggaaaatatgtacatcagaacttctta |
246 |
Q |
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| T |
55956271 |
-agatgaggaaaatatgtacatcacagcttctta |
55956239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 12426793 - 12426569
Alignment:
| Q |
13 |
aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgc |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||| |||| | ||||||||| ||||||||| ||||||| | |
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| T |
12426793 |
aatatggacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaatttgactaaagagataatgaagacacatgatctttc |
12426694 |
T |
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| Q |
113 |
ttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacggtgattattggagacaaat |
212 |
Q |
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| T |
12426693 |
ttttgttcagaggccacaattcctagctccaaatatattaacatatgaatcaa----aagatattatctttgcttcatatggtgattattggagac---- |
12426602 |
T |
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| Q |
213 |
gacatgaggaaaatatgtacatcagaacttctta |
246 |
Q |
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| T |
12426601 |
-agatgagaaaaatatgtacatcagaacttctta |
12426569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 12266027 - 12266251
Alignment:
| Q |
13 |
aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgc |
112 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||| |||| ||||||| ||| ||| ||||| ||||||| | |
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| T |
12266027 |
aatatggacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaatttgaccaaagaaataatgaggacacatgatctttc |
12266126 |
T |
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| Q |
113 |
ttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacggtgattattggagacaaat |
212 |
Q |
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| T |
12266127 |
tttcgttgagaggccacgattccttgctccgaatataataacctatgaatcaa----aagatattctcatgtcttcatatggtgattattggagac---- |
12266218 |
T |
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| Q |
213 |
gacatgaggaaaatatgtacatcagaacttctta |
246 |
Q |
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| T |
12266219 |
-agatgagaaaaatatgtacatcagaacttctta |
12266251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 7140645 - 7140686
Alignment:
| Q |
173 |
atattgtctttgctccatacggtgattattggagacaaatga |
214 |
Q |
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| T |
7140645 |
atattgtattttctccatatggtgattattggagacaaatga |
7140686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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