View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_83 (Length: 248)
Name: NF7550_low_83
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 43385765 - 43385864
Alignment:
| Q |
20 |
tgtttagcagaaaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc |
119 |
Q |
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| T |
43385765 |
tgtttagcagaaaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc |
43385864 |
T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 43385911 - 43385984
Alignment:
| Q |
156 |
gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacaccaaa |
229 |
Q |
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| T |
43385911 |
gattaacttagcattaattggaagaagaggttgcagaagggttctgctgtggccattcattggaatacaccaaa |
43385984 |
T |
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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 8775189 - 8775288
Alignment:
| Q |
20 |
tgtttagcagaaaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc |
119 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
8775189 |
tgtttagcagaaaataactctgattagataacaggaagatagccaatacaacttaccaactcgatcagacctttctagccttttattaagagcagctagc |
8775288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 8775319 - 8775388
Alignment:
| Q |
156 |
gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacac |
225 |
Q |
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| T |
8775319 |
gattaacttagcattaattggaagaagaggttgcagaagggtgctgcagcggccattcgttggaatacac |
8775388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 1692183 - 1692084
Alignment:
| Q |
20 |
tgtttagcagaaaataactatgattagataacaggaagatagccaatacaacttaccaactcgatcaaaccttcctagccttttattaagagcagctagc |
119 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
1692183 |
tgtttagcagaaaataactgtgattagataacaggaagatagccaatacaacttaccaactcgatcagacctttctagccttttattaagagcagttagc |
1692084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 1692053 - 1691984
Alignment:
| Q |
156 |
gattaacttagcattaattggaagaagaggttgctgaagggttctgctgtggccattcattggaatacac |
225 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||| |
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| T |
1692053 |
gattaacttagcattaattggaagaagaggttgcagaagggtgctgcagcggccattcattggaatacac |
1691984 |
T |
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