View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_84 (Length: 247)
Name: NF7550_low_84
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 33332076 - 33332307
Alignment:
| Q |
1 |
cttatgcctttaccgccgccaccccatgatgccttgatcattgcagggtaacctacaacttgacaacttgcaattgcttcctttgttgtataaacacatg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
33332076 |
cttatgcctttaccgccgcccccccatgatgccttgatcattgcagggtaacctacaacttgacaacttgcaattgcttcttctgttgtataaacacatg |
33332175 |
T |
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| Q |
101 |
atgcacggtaaatttcatcaggaatagtaatcaagtcgctttctggaggaaatttcacctggaaaaaa-ttgaaaagtcataagttgggaaccccataca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33332176 |
atgcacggtaaatttcatcaggaatagtaatcaagtcgctttctggaggaaatttcacctggaaaaaatttgaaaagtcataagttgggaaccccataca |
33332275 |
T |
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| Q |
200 |
aaagaaataaactaaagggggaggtgaaactt |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33332276 |
aaagaaataaactaaagggggaggtgaaactt |
33332307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 33353365 - 33353578
Alignment:
| Q |
1 |
cttatgcctttaccgccgccaccccatgatgccttgatcattgcagggtaacctacaacttgacaacttgcaattgcttcctttgttgtataaacacatg |
100 |
Q |
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|||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
33353365 |
cttatgcctttaccaccaccaccccaagatgccttgatcattgcagggtaacctactacttgacaacttgcaattgcttcttctgttgtataaacacatg |
33353464 |
T |
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| Q |
101 |
atgcacggtaaatttcatcaggaatagtaatcaagtcgctttctggaggaaatttcacctg-gaaaaaattgaaaagtcataagttgggaaccccataca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||| |
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| T |
33353465 |
ctgcacggtaaatttcatcaggaatagtaatcaagtcgctttctggaggaattttcacctgcaaaaaaattgcaaagtcatgagttgcgaaccccataca |
33353564 |
T |
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| Q |
200 |
aaagaaataaacta |
213 |
Q |
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|||||||| ||||| |
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| T |
33353565 |
aaagaaatgaacta |
33353578 |
T |
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