View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_88 (Length: 242)

Name: NF7550_low_88
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_88
NF7550_low_88
[»] chr7 (6 HSPs)
chr7 (57-238)||(4568155-4568336)
chr7 (67-204)||(28490161-28490298)
chr7 (114-189)||(21935561-21935636)
chr7 (114-160)||(11969077-11969123)
chr7 (114-160)||(11977081-11977127)
chr7 (114-204)||(20232830-20232919)
[»] chr2 (8 HSPs)
chr2 (57-238)||(27878473-27878651)
chr2 (93-189)||(27180650-27180746)
chr2 (93-189)||(27830192-27830288)
chr2 (128-194)||(15699916-15699982)
chr2 (128-194)||(15712455-15712521)
chr2 (114-230)||(18830449-18830563)
chr2 (77-209)||(27488774-27488906)
chr2 (115-189)||(21872596-21872670)
[»] chr1 (3 HSPs)
chr1 (69-238)||(30984966-30985137)
chr1 (119-199)||(19354472-19354552)
chr1 (119-235)||(14458480-14458592)
[»] chr5 (3 HSPs)
chr5 (67-238)||(24189526-24189701)
chr5 (129-197)||(30074614-30074682)
chr5 (114-199)||(23189837-23189920)
[»] scaffold0402 (1 HSPs)
scaffold0402 (114-226)||(5739-5850)
[»] chr8 (5 HSPs)
chr8 (93-229)||(28914448-28914582)
chr8 (128-194)||(18692176-18692242)
chr8 (119-199)||(17816855-17816935)
chr8 (114-189)||(8989612-8989689)
chr8 (129-181)||(17729460-17729512)
[»] chr6 (6 HSPs)
chr6 (105-205)||(23649226-23649326)
chr6 (162-238)||(22919103-22919178)
chr6 (131-226)||(26272774-26272868)
chr6 (94-174)||(18561385-18561463)
chr6 (162-238)||(22904253-22904328)
chr6 (162-238)||(22886297-22886372)
[»] scaffold0062 (3 HSPs)
scaffold0062 (128-194)||(48828-48894)
scaffold0062 (128-194)||(61367-61433)
scaffold0062 (128-194)||(64095-64161)
[»] chr4 (1 HSPs)
chr4 (128-194)||(14118264-14118330)
[»] chr3 (2 HSPs)
chr3 (57-158)||(8364820-8364920)
chr3 (156-212)||(8364777-8364833)
[»] scaffold0054 (1 HSPs)
scaffold0054 (162-238)||(9813-9888)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 4568336 - 4568155
Alignment:
Q  57 aaatttcagtactagacaaactcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaat 156  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  4568336 aaattccagtattagacaaactcaaatcagacataattgcaataaatcatactaactctaatgaatataaggtatatgaattaatgatttgaaacttaat 4568237  T
Q  157 tgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4568236 tgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagggtaaaaattaat 4568155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 28490298 - 28490161
Alignment:
Q  67 actagacaaactcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaa 166  Q
    ||||||||| ||||| ||| || |||||||||||||  | |||||  |||| ||||| ||  |||| |||||||||||||||||||||| ||||| | ||    
T  28490298 actagacaagctcaagtcaaacctaattgcaataaagcaaactaacactaaggaacacaaaatatacgaattaatgatttgaaacttaagtgaagttaaa 28490199  T
Q  167 ttgtgatataattgaatttgaaaagaatcttaactcaa 204  Q
    | |||| | |||||||||||||||||||||||| ||||    
T  28490198 tcgtgagaaaattgaatttgaaaagaatcttaattcaa 28490161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 21935561 - 21935636
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaa 189  Q
    |||||||||| | ||||||||||| |||| |||||||||||||||||  || ||||| ||| ||||||||||||||    
T  21935561 ctaatgaacacatggtatatgaatcaatggtttgaaacttaattgaattttgattgtaataaaattgaatttgaaa 21935636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 11969123 - 11969077
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaa 160  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||    
T  11969123 ctaatgaacagaaggtatatgaactaatgaattgaaacttaattgaa 11969077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 11977127 - 11977081
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaa 160  Q
    |||||||||| |||||||||||| |||||| ||||||||| ||||||    
T  11977127 ctaatgaacacaaggtatatgaactaatgaattgaaacttgattgaa 11977081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 20232830 - 20232919
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaa 204  Q
    |||||||||| |||||||||||| |||||| |||||  || ||||||  | |||||||||  |||||| || |||||||||||||| ||||    
T  20232830 ctaatgaacacaaggtatatgaactaatgaattgaactttgattgaa-ttcaattgtgatcaaattgacttagaaaagaatcttaattcaa 20232919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 27878651 - 27878473
Alignment:
Q  57 aaatttcagtactagacaaactcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaat 156  Q
    ||||||||  ||||||||| || ||| || || |||||||||||||  |||| ||  |||||||||| || |||||| ||||||||||||||||||||||    
T  27878651 aaatttcaaaactagacaa-cttaaaccaaacttaattgcaataaaccacacgaacactaatgaacacaaagtatatcaattaatgatttgaaacttaat 27878553  T
Q  157 tgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||| |||||||| ||| |||| |||||||||| |||||||| |||||||||   ||||||||||| ||||||||||||||    
T  27878552 tgaaggttaattgtaataaaattaaatttgaaaataatcttaattcaaggaat--gagattaggttaggtgtaaaaattaat 27878473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 27180746 - 27180650
Alignment:
Q  93 ttgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaa 189  Q
    |||||| |||| |||||||  |||||||||| |||||||| |||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27180746 ttgcaacaaatcacactaacactaatgaacacaaggtataagaatcaatggtttgaaacttaattgaagcttgattgtgataaaattgaatttgaaa 27180650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 27830288 - 27830192
Alignment:
Q  93 ttgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaa 189  Q
    |||||| |||| |||||||  |||||||||| |||||||| |||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27830288 ttgcaacaaatcacactaacactaatgaacacaaggtataagaatcaatggtttgaaacttaattgaagcttgattgtgataaaattgaatttgaaa 27830192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 15699982 - 15699916
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  15699982 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 15699916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 15712521 - 15712455
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  15712521 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 15712455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 18830449 - 18830563
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaa 213  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||||||| ||| ||||||||| ||||||||||| ||||||||| |||| ||| |||   |    
T  18830449 ctaatgaacacaaggtatatgaatcaatggtttgagacttaattgaaccttgattgtgataaaattgaatttg-aaagaatctcaactgaagtaat-tga 18830546  T
Q  214 gattaggttaagtgtaa 230  Q
    ||||||| |||||||||    
T  18830547 gattaggctaagtgtaa 18830563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 27488906 - 27488774
Alignment:
Q  77 ctcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatata 176  Q
    ||||| ||| || |||||||||||||  | |||||  |||| ||||| || |||||||||||||||||||||||  ||||||||| | |||||| ||  |    
T  27488906 ctcaattcaaacctaattgcaataaaacaaactaacactaaggaacaaaaagtatatgaattaatgatttgaaatctaattgaagttcaattgtaatgaa 27488807  T
Q  177 attgaatttgaaaagaatcttaactcaaggaat 209  Q
    |||||||||||||||||| |||| |||| ||||    
T  27488806 attgaatttgaaaagaattttaattcaatgaat 27488774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 21872670 - 21872596
Alignment:
Q  115 taatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaa 189  Q
    ||||||||| ||| ||||||||| ||||  || ||||||| ||||| ||| ||||||||| ||||||||||||||    
T  21872670 taatgaacacaagatatatgaatcaatggcttaaaacttatttgaaccttgattgtgataaaattgaatttgaaa 21872596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 30984966 - 30985137
Alignment:
Q  69 tagacaaactcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaatt 168  Q
    |||||||||||||| || || |||||||||||||  ||||||   |||| | ||| ||  ||||||||||||||||||||||||||||||||| ||||||    
T  30984966 tagacaaactcaaaccaaacctaattgcaataaaccacactagcactaaagcacaaaaaatatatgaattaatgatttgaaacttaattgaagtttaatt 30985065  T
Q  169 gtgatataattgaatttgaaaagaatc---ttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    |||||| |||||||||| |||||||||    ||| |||| |||||||| ||||||||||||||||||||||||    
T  30985066 gtgataaaattgaatttaaaaagaatcctactaattcaatgaatcaaa-attaggttaagtgtaaaaattaat 30985137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 19354472 - 19354552
Alignment:
Q  119 gaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaa 199  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  19354472 gaacacaagatatatgaattaatgatttgaaacttaactgaagtttaattgtgataaaattgaatttgaaaagaatcttaa 19354552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 14458480 - 14458592
Alignment:
Q  119 gaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagatta 218  Q
    ||||| || |||||||||||||||||||||||   |||||||| |||||||||||| |||||||||||||||||| ||| | |||| ||||  |||||||    
T  14458480 gaacacaaagtatatgaattaatgatttgaaa---aattgaagtttaattgtgataaaattgaatttgaaaagaaccttgattcaatgaat-taagatta 14458575  T
Q  219 ggttaagtgtaaaaatt 235  Q
    | |||||| | ||||||    
T  14458576 gtttaagtatgaaaatt 14458592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 24189701 - 24189526
Alignment:
Q  67 actagacaaactcaaatcagacataattgcaataaatta-----cactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaag 161  Q
    |||||||||||||||| || || ||||||||||| | ||     ||||||  |||| ||||| || |||||||| |||| ||||||||||||||||||||    
T  24189701 actagacaaactcaaaccaaacctaattgcaatataataaaccacactaacactaaggaacacaaagtatatgagttaaggatttgaaacttaattgaag 24189602  T
Q  162 cttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
     |||||||||||| ||||||||||||||| |||||||| |||| ||||| ||||| |||||||||| |||| |||||    
T  24189601 tttaattgtgataaaattgaatttgaaaaaaatcttaattcaatgaatc-aagataaggttaagtgaaaaagttaat 24189526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 30074682 - 30074614
Alignment:
Q  129 tatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatctt 197  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||| ||||||||||||||||||||||    
T  30074682 tatatgaattaatgattcgaaacttaatagaagtttaattttgataaaattgaatttgaaaagaatctt 30074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 23189837 - 23189920
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaa 199  Q
    ||||||||||  ||||||||||| |||||| ||||||||| ||||||  | |||||||||  |||||| || ||||||||||||||    
T  23189837 ctaatgaacactaggtatatgaactaatgaattgaaactt-attgaa-ttcaattgtgatcaaattgacttagaaaagaatcttaa 23189920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 5739 - 5850
Alignment:
Q  114 ctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaa 213  Q
    |||| ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||  ||| ||||  ||    
T  5739 ctaaggaacacaagatatatgaattaatgatttgaaacttaactgaagtttaattgtgataaaattgaatttgaaaagaatcttaatccaacgaat-taa 5837  T
Q  214 gattaggttaagt 226  Q
    |||||||||||||    
T  5838 gattaggttaagt 5850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 28914448 - 28914582
Alignment:
Q  93 ttgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaaga 192  Q
    ||||||||||| |||||||  ||||| |||| |||||||||||||||||  |||||| |||||||||||||| ||||||||| ||| ||||||| |||||    
T  28914448 ttgcaataaatcacactaacactaataaacacaaggtatatgaattaatagtttgaagcttaattgaagcttgattgtgataaaatggaatttg-aaaga 28914546  T
Q  193 atcttaactcaaggaatcaaagattaggttaagtgta 229  Q
    ||||||| ||||| |||  ||||||||||||||||||    
T  28914547 atcttaattcaagtaat-taagattaggttaagtgta 28914582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 18692242 - 18692176
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  18692242 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 18692176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 17816935 - 17816855
Alignment:
Q  119 gaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaa 199  Q
    ||||| || |||||||||||||||| ||||||||||||||||  |  ||||||||| |||||| ||||| |||||||||||    
T  17816935 gaacacaaagtatatgaattaatgaattgaaacttaattgaatttcgattgtgataaaattgactttgataagaatcttaa 17816855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 8989689 - 8989612
Alignment:
Q  114 ctaatgaacataaggtatat--gaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaa 189  Q
    ||||||||||  ||||||||  |||| |||||||||||||||||||||| ||| || |||||| | || |||||||||    
T  8989689 ctaatgaacaagaggtatatttgaatcaatgatttgaaacttaattgaaccttgatcgtgataaagtttaatttgaaa 8989612  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 17729460 - 17729512
Alignment:
Q  129 tatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattga 181  Q
    ||||||||||||||||| ||||| ||||||| | | |||||||||| ||||||    
T  17729460 tatatgaattaatgattagaaacctaattgacgttcaattgtgataaaattga 17729512  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 23649226 - 23649326
Alignment:
Q  105 acactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaa 204  Q
    |||||||  |||||| ||| || ||||||| |||||||||| |||||| |||||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  23649226 acactaacactaatggacacaaagtatatgcattaatgattcgaaactcaattgaagctaaattgtgataaaattgaattcgaaaagaatcttaattcaa 23649325  T
Q  205 g 205  Q
    |    
T  23649326 g 23649326  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 22919178 - 22919103
Alignment:
Q  162 cttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||||| ||||  |||||||||||||||||||||||| |||| ||||| ||||||| |||||||| ||||||||||    
T  22919178 cttaattatgatcaaattgaatttgaaaagaatcttaattcaatgaatc-aagattatgttaagtgaaaaaattaat 22919103  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 26272774 - 26272868
Alignment:
Q  131 tatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagt 226  Q
    ||||||||||||||||||||| ||||||||| | |||||||||  |||||||||| ||||| || |||| |||| ||||  || ||||||||||||    
T  26272774 tatgaattaatgatttgaaacctaattgaagttcaattgtgatgaaattgaatttaaaaaggattttaattcaatgaat-taatattaggttaagt 26272868  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 18561385 - 18561463
Alignment:
Q  94 tgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaattgaagcttaattgtgata 174  Q
    |||||||||  |||||||  |||||||||| |||||||||||||||||| |||| ||| |||||||| |||||||||||||    
T  18561385 tgcaataaaccacactaacactaatgaacacaaggtatatgaattaatgttttg-aacataattgaa-cttaattgtgata 18561463  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 22904328 - 22904253
Alignment:
Q  162 cttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||||| ||||  |||||||||||||||||||||||| |||| |||||  |||||| |||||||  ||||||||||    
T  22904328 cttaattatgatcaaattgaatttgaaaagaatcttaattcaatgaatc-gagattatgttaagttaaaaaattaat 22904253  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 22886372 - 22886297
Alignment:
Q  162 cttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||||| ||||  ||||||||||||||||||| |||| |||| |||||  |||||| |||||||  ||||||||||    
T  22886372 cttaattatgatcaaattgaatttgaaaagaatattaattcaatgaatc-gagattatgttaagttaaaaaattaat 22886297  T

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Target: scaffold0062 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 48894 - 48828
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  48894 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 48828  T

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Target: scaffold0062; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 61433 - 61367
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  61433 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 61367  T

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Target: scaffold0062; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 64161 - 64095
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  64161 gtatatgaataaatgatttgaaatttaattgaagtttaattgtgataaaattgaatttgaaaagaat 64095  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 14118264 - 14118330
Alignment:
Q  128 gtatatgaattaatgatttgaaacttaattgaagcttaattgtgatataattgaatttgaaaagaat 194  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||    
T  14118264 gtatataaattaatgatttgaaactcaattgaagtttaattgtgataaaattgaatttaaaaagaat 14118330  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 8364920 - 8364820
Alignment:
Q  57 aaatttcagtactagacaaactcaaatcagacataattgcaataaattacactaattctaatgaacataaggtatatgaattaatgatttgaaacttaat 156  Q
    ||||||||  |||||||||||||||| || || |||||||||||||  | |||||   |||  |||| ||  ||||||||||||||||||||||||||||    
T  8364920 aaatttcaaaactagacaaactcaaaccaaacctaattgcaataaacaa-actaacattaagaaacacaaaatatatgaattaatgatttgaaacttaat 8364822  T
Q  157 tg 158  Q
    ||    
T  8364821 tg 8364820  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 8364833 - 8364777
Alignment:
Q  156 ttgaagcttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaa 212  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| |||| |||||||    
T  8364833 ttgaaacttaattgtgataaaaatgaatttgaaaaaaatcttaattcaatgaatcaa 8364777  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 9888 - 9813
Alignment:
Q  162 cttaattgtgatataattgaatttgaaaagaatcttaactcaaggaatcaaagattaggttaagtgtaaaaattaat 238  Q
    ||||||| ||||  ||||||||||||||||||| |||| |||| |||||  |||||| |||||||  ||||||||||    
T  9888 cttaattatgatcaaattgaatttgaaaagaatattaattcaatgaatc-gagattatgttaagttaaaaaattaat 9813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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