View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_low_93 (Length: 237)
Name: NF7550_low_93
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48557000 - 48556767
Alignment:
| Q |
1 |
tacattcaatgtcacattgctcttctatagatagcaggacttgcgataaggtagataatttccattcaagagaatctagacaaaaatgatactagtaaga |
100 |
Q |
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| T |
48557000 |
tacattcaatgtcacattgctcttctatagatagcaggacttgcgataaggtagataatttccattcaagagaatcaagacaaaaatgatactagtaaga |
48556901 |
T |
|
| Q |
101 |
gactactagcatttctttttgagagaaagagagtaaagagagtctgtttttgtcatagtttagtcgtattgtatatcatctcacttgtcttacatcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48556900 |
gactactagcatttctttttgagagaaagagagtaaagagagtctgtttttgtcatagtttagtcgtattgtatatcatctcacttgtcttacatcaaca |
48556801 |
T |
|
| Q |
201 |
gagttattgtaatcttatccttggcgtactagat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48556800 |
gagttattgtaatcttatccttggcgtactagat |
48556767 |
T |
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