View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_low_98 (Length: 221)

Name: NF7550_low_98
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_low_98
NF7550_low_98
[»] chr5 (26 HSPs)
chr5 (124-221)||(39030563-39030660)
chr5 (115-221)||(33669940-33670046)
chr5 (115-221)||(39030576-39030682)
chr5 (113-211)||(38958050-38958148)
chr5 (129-216)||(42324898-42324985)
chr5 (111-209)||(30293364-30293461)
chr5 (115-221)||(34252708-34252814)
chr5 (130-218)||(15119303-15119391)
chr5 (150-210)||(28023947-28024007)
chr5 (128-221)||(2424451-2424544)
chr5 (117-210)||(9956522-9956615)
chr5 (130-211)||(504130-504209)
chr5 (128-198)||(14646398-14646468)
chr5 (141-191)||(26730097-26730147)
chr5 (115-221)||(34252730-34252836)
chr5 (160-217)||(2884064-2884121)
chr5 (130-191)||(26835273-26835334)
chr5 (128-221)||(33669931-33670024)
chr5 (130-206)||(33498367-33498443)
chr5 (124-221)||(15119310-15119407)
chr5 (185-218)||(26835291-26835324)
chr5 (157-206)||(37040136-37040185)
chr5 (129-201)||(968315-968387)
chr5 (114-218)||(2424428-2424532)
chr5 (158-206)||(38958089-38958137)
chr5 (150-210)||(39290808-39290868)
[»] chr1 (15 HSPs)
chr1 (130-221)||(3739827-3739918)
chr1 (112-221)||(3739802-3739911)
chr1 (128-221)||(29855062-29855155)
chr1 (128-209)||(5056319-5056400)
chr1 (114-209)||(3694012-3694107)
chr1 (130-201)||(19758304-19758375)
chr1 (130-195)||(30693341-30693406)
chr1 (130-201)||(47543605-47543676)
chr1 (129-207)||(6061487-6061565)
chr1 (130-208)||(29855084-29855162)
chr1 (128-182)||(35310304-35310358)
chr1 (114-209)||(37918904-37918999)
chr1 (129-195)||(30295927-30295993)
chr1 (155-208)||(3564211-3564264)
chr1 (161-209)||(46335501-46335549)
[»] chr2 (31 HSPs)
chr2 (128-221)||(31469075-31469168)
chr2 (128-221)||(31469084-31469177)
chr2 (115-221)||(10459257-10459363)
chr2 (115-221)||(10459279-10459385)
chr2 (124-209)||(944771-944856)
chr2 (124-210)||(19924304-19924390)
chr2 (128-221)||(16180448-16180541)
chr2 (115-218)||(11386325-11386428)
chr2 (115-194)||(17437166-17437245)
chr2 (128-210)||(43398862-43398944)
chr2 (129-206)||(41374557-41374634)
chr2 (130-209)||(7932749-7932828)
chr2 (148-211)||(13724136-13724199)
chr2 (71-116)||(17794265-17794310)
chr2 (176-221)||(41099030-41099075)
chr2 (130-209)||(16564384-16564461)
chr2 (10-50)||(17794202-17794242)
chr2 (142-206)||(33615269-33615333)
chr2 (141-221)||(35311198-35311277)
chr2 (163-203)||(37104892-37104932)
chr2 (128-208)||(38935367-38935447)
chr2 (128-211)||(16180439-16180522)
chr2 (130-209)||(38935388-38935467)
chr2 (140-198)||(35693934-35693992)
chr2 (124-209)||(41912102-41912188)
chr2 (149-210)||(10069242-10069303)
chr2 (130-183)||(15660702-15660755)
chr2 (125-206)||(43398839-43398920)
chr2 (130-198)||(2884262-2884330)
chr2 (157-221)||(7932756-7932820)
chr2 (163-211)||(23227321-23227369)
[»] chr7 (14 HSPs)
chr7 (134-221)||(16866414-16866501)
chr7 (115-221)||(16866392-16866498)
chr7 (128-193)||(6803311-6803376)
chr7 (130-196)||(30794447-30794513)
chr7 (128-208)||(47967917-47967997)
chr7 (129-195)||(44816472-44816538)
chr7 (128-201)||(5026144-5026217)
chr7 (141-221)||(18732003-18732083)
chr7 (117-173)||(27147590-27147646)
chr7 (136-184)||(34515855-34515903)
chr7 (122-217)||(18731988-18732083)
chr7 (132-209)||(4259331-4259408)
chr7 (176-209)||(27147622-27147655)
chr7 (114-186)||(1554883-1554955)
[»] chr3 (13 HSPs)
chr3 (115-221)||(46829062-46829161)
chr3 (116-221)||(32221483-32221588)
chr3 (130-208)||(31280161-31280239)
chr3 (113-195)||(47783067-47783149)
chr3 (120-201)||(26914482-26914563)
chr3 (130-221)||(46829055-46829139)
chr3 (128-221)||(32221474-32221567)
chr3 (124-217)||(47783095-47783188)
chr3 (129-195)||(26439322-26439387)
chr3 (155-208)||(15282665-15282718)
chr3 (150-195)||(22756913-22756958)
chr3 (180-221)||(40905815-40905856)
chr3 (146-210)||(30443762-30443826)
[»] chr4 (22 HSPs)
chr4 (115-193)||(55762905-55762983)
chr4 (115-193)||(55827282-55827360)
chr4 (130-221)||(12276826-12276917)
chr4 (128-201)||(4423153-4423226)
chr4 (130-174)||(36494421-36494465)
chr4 (131-195)||(54235261-54235325)
chr4 (126-211)||(12276843-12276928)
chr4 (112-171)||(2734167-2734226)
chr4 (155-210)||(6924725-6924780)
chr4 (126-221)||(18995146-18995239)
chr4 (115-186)||(30848640-30848711)
chr4 (115-221)||(24980616-24980722)
chr4 (134-195)||(3249695-3249756)
chr4 (160-193)||(39973991-39974024)
chr4 (160-193)||(39978342-39978375)
chr4 (141-210)||(41615703-41615772)
chr4 (132-221)||(54009997-54010085)
chr4 (176-221)||(55827293-55827338)
chr4 (141-201)||(4479609-4479669)
chr4 (145-181)||(4780358-4780394)
chr4 (115-192)||(21606029-21606108)
chr4 (141-209)||(25855118-25855186)
[»] chr6 (20 HSPs)
chr6 (128-221)||(31323818-31323911)
chr6 (113-209)||(28004612-28004708)
chr6 (115-195)||(31522647-31522726)
chr6 (129-195)||(8437813-8437879)
chr6 (128-207)||(28004650-28004729)
chr6 (115-221)||(31323827-31323933)
chr6 (130-208)||(35003765-35003843)
chr6 (131-209)||(9829898-9829976)
chr6 (115-168)||(14446687-14446740)
chr6 (130-171)||(28756663-28756704)
chr6 (157-221)||(9675775-9675839)
chr6 (128-208)||(30531182-30531262)
chr6 (113-221)||(30531191-30531299)
chr6 (115-217)||(2282415-2282517)
chr6 (124-198)||(13422132-13422206)
chr6 (115-221)||(14446709-14446815)
chr6 (173-210)||(6068999-6069036)
chr6 (125-174)||(7549844-7549893)
chr6 (141-221)||(2282415-2282495)
chr6 (130-174)||(7549781-7549825)
[»] scaffold2113 (2 HSPs)
scaffold2113 (112-209)||(565-661)
scaffold2113 (128-206)||(604-682)
[»] chr8 (13 HSPs)
chr8 (130-221)||(33557788-33557879)
chr8 (128-210)||(7974810-7974892)
chr8 (137-210)||(13209977-13210050)
chr8 (130-209)||(35901060-35901139)
chr8 (148-221)||(13209977-13210050)
chr8 (130-206)||(8777775-8777851)
chr8 (120-196)||(29110997-29111073)
chr8 (130-209)||(9548074-9548153)
chr8 (163-209)||(30171517-30171563)
chr8 (157-218)||(8777785-8777846)
chr8 (136-193)||(15114629-15114686)
chr8 (128-209)||(28725590-28725670)
chr8 (124-201)||(37627943-37628019)
[»] scaffold0027 (1 HSPs)
scaffold0027 (115-201)||(13165-13251)
[»] scaffold0034 (1 HSPs)
scaffold0034 (130-217)||(94952-95039)
[»] scaffold0650 (1 HSPs)
scaffold0650 (149-211)||(20-82)
[»] scaffold0097 (1 HSPs)
scaffold0097 (149-195)||(37936-37982)
[»] scaffold0126 (1 HSPs)
scaffold0126 (127-191)||(28170-28234)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 39030563 - 39030660
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  39030563 cgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgctt 39030660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 33670046 - 33669940
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||| | ||| ||||||| ||||||||| |||||||| ||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||  ||    
T  33670046 tactccatccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatt 33669947  T
Q  215 tttgctt 221  Q
    |||||||    
T  33669946 tttgctt 33669940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 39030682 - 39030576
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| | | ||||||||||||||||| || ||||| ||||||||||||||||| |  ||| |||  ||||||||||||||||||||||||||| ||    
T  39030682 tactccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 39030583  T
Q  215 tttgctt 221  Q
    |||||||    
T  39030582 tttgctt 39030576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 38958050 - 38958148
Alignment:
Q  113 tgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    |||||| ||| |||||||||||||||| |||| ||| | || ||||||||||||||||| || ||| |||||||||||||||| ||||  |||||||||    
T  38958050 tgtacttcctccgttccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttgacca 38958148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 42324985 - 42324898
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttt 216  Q
    ||||||||||| |||| |||||||| ||||||||||||||||| || ||||||| |||||||||||| || || | ||||||| ||||    
T  42324985 caaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaatttt 42324898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 30293364 - 30293461
Alignment:
Q  111 aatgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||||||| ||||| | |||||||||| |||||||| |||| |||||| ||||||||||||| ||||||| || ||||||||| ||| | |||||||    
T  30293364 aatgtactcc-ttcgtactaaaatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgac 30293461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 34252708 - 34252814
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| ||| ||||||| ||||||||| |||||||| ||||||||||||||||| || ||||||| | ||| || ||| ||||| |||| |||  ||    
T  34252708 tactccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatt 34252807  T
Q  215 tttgctt 221  Q
    |||||||    
T  34252808 tttgctt 34252814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 15119303 - 15119391
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttg 218  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||| ||||||||||  ||||| |||||||| | || |||| ||||||    
T  15119303 aaaatataagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttg 15119391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 28024007 - 28023947
Alignment:
Q  150 tcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||    
T  28024007 tcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaacttatattgacc 28023947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 2424544 - 2424451
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||| ||||| ||||| |||||| | ||||||||||||||||| || ||||||||||||| |||||| | ||| |||| || | |||||||||    
T  2424544 ccaaattataaacaaaaattggtcgataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgctt 2424451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 9956615 - 9956522
Alignment:
Q  117 ctcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    |||||| ||| ||||||| |||| |||| ||||| || |||||||||||||||||||| ||||||| || || |||||| ||| | ||||||||    
T  9956615 ctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacc 9956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 504130 - 504209
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    ||||||||||||||| | |||||| |||| |||||  ||||| || | |||||||| |||||||||||| ||||||||||||    
T  504130 aaaatataagcaaaaatcggtcaacaaaaattaat--atttggttcagaatttgtatcaaatacattaatttttgttgacca 504209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 14646468 - 14646398
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaa 198  Q
    ||||||||||||| ||| ||| | || |||| ||||||||| ||||| ||||||||||| |||||||||||    
T  14646468 ccaaaatataagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaa 14646398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 26730147 - 26730097
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaat 191  Q
    |||| ||||| || ||||||||||||||||||||||||||||||| |||||    
T  26730147 aaaaattggttaacaaaagttaatgtatttgattaaaaatttgtatcaaat 26730097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 34252836 - 34252730
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| ||| ||||||| ||||||||| | ||| || | ||||| ||| || ||    ||| |||| ||||||||||||||||||||||||||| ||    
T  34252836 tactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatt 34252737  T
Q  215 tttgctt 221  Q
    |||||||    
T  34252736 tttgctt 34252730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 2884064 - 2884121
Alignment:
Q  160 ttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccacttttt 217  Q
    ||||||||||||||| ||||||||||  ||||||||||| |||| ||||||| |||||    
T  2884064 ttaatgtatttgatttaaaatttgtattaaatacattaaattttattgaccaattttt 2884121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 26835334 - 26835273
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaat 191  Q
    ||||||||| |||||  ||||||| |||||||||| |||||| ||||||||||||| |||||    
T  26835334 aaaatataaacaaaaagtggtcaacaaaagttaatatatttggttaaaaatttgtatcaaat 26835273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 33669931 - 33670024
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||| ||||||||| | |||||| | |||||| ||||| || |  ||| |||  ||||||||||||||||||| ||||||| |||||||||    
T  33669931 ccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgctt 33670024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 33498367 - 33498443
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    ||||||||||||||| |||| ||| |||| | ||| |||||| || ||||||||||| |||||||| ||||| ||||    
T  33498367 aaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 15119407 - 15119310
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||| ||||||||| ||||| ||||| || | |||||||| ||||| ||  ||| |||| | |||||||||||| |||| ||||| | |||||||||    
T  15119407 cgttctaaaatataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaatttttgctt 15119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 26835291 - 26835324
Alignment:
Q  185 accaaatacattaacttttgttgaccactttttg 218  Q
    |||||||| |||||||||||||||||||||||||    
T  26835291 accaaatatattaacttttgttgaccactttttg 26835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 37040136 - 37040185
Alignment:
Q  157 aagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    |||||||||||||||||| ||||||||||||  |||||| ||||| ||||    
T  37040136 aagttaatgtatttgatttaaaatttgtacctcatacatcaacttatgtt 37040185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 968387 - 968315
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    ||||||||||| |||| |  ||||| |||| ||||| |||||  || |||||||||||||||||||| |||||    
T  968387 caaaatataagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttgtaccaaatacatcaactt 968315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 2424428 - 2424532
Alignment:
Q  114 gtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccact 213  Q
    ||||||||| ||| | ||||||||||||||| || || || | ||| | |||||| || |  ||| |||| ||||||||||||||||||| | ||||| |    
T  2424428 gtactccctccgtgctaaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaat 2424527  T
Q  214 ttttg 218  Q
    |||||    
T  2424528 ttttg 2424532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 38958137 - 38958089
Alignment:
Q  158 agttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    |||| ||||||||| |  |||||||| ||||||||||||||||||||||    
T  38958137 agttgatgtatttggtacaaaatttgaaccaaatacattaacttttgtt 38958089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 39290868 - 39290808
Alignment:
Q  150 tcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    |||| |||||||||||||| | |||||||||||   |||||||||| || |||||||||||    
T  39290868 tcaacaaaagttaatgtatctaattaaaaatttaatccaaatacatcaatttttgttgacc 39290808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 3739918 - 3739827
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3739918 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgctt 3739827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 3739802 - 3739911
Alignment:
Q  112 atgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| |  ||| |||  |||||||||||||||||||||||||||    
T  3739802 atgtactccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgacca 3739901  T
Q  212 ctttttgctt 221  Q
     |||||||||    
T  3739902 atttttgctt 3739911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 29855062 - 29855155
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||| ||| ||  |||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||    
T  29855062 ccaaaatataagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgctt 29855155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 5056400 - 5056319
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||| ||||| |||||||| |||| |||| |||||||||| |||||||||| ||||||||| ||||| |||||||    
T  5056400 ccaaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgac 5056319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 3694107 - 3694012
Alignment:
Q  114 gtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||| ||| || ||||||||||||| | || |||||||| |||| ||||||||||||||| ||||||||||  |||||||| || || |||||||    
T  3694107 gtacttcctccgctccaaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgac 3694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 19758375 - 19758304
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    |||||||||| |||| |||||||| ||||||||||||||||  || | |||||||||||||||||| |||||    
T  19758375 aaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaactt 19758304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 30693341 - 30693406
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||||||  |||| ||| |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  30693341 aaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 30693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 47543605 - 47543676
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    |||||||||  |||| |||||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  47543605 aaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaactt 47543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 6061565 - 6061487
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttg 207  Q
    |||||| | ||||||  |||||||| |||| |||||||||||| || ||||||||||| | |||||||||||| |||||    
T  6061565 caaaatgtgagcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttg 6061487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 29855162 - 29855084
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    ||||||||||||||| ||| |||| ||||||||||||||||  |  ||| |||  ||||||||||| ||||||||||||    
T  29855162 aaaatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttga 29855084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 35310358 - 35310304
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaattt 182  Q
    |||||||||||| |||| |||||||| |||| ||||||||||||||| |||||||    
T  35310358 ccaaaatataagtaaaaattggtcaacaaaaattaatgtatttgatttaaaattt 35310304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 37918904 - 37918999
Alignment:
Q  114 gtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||||| |||| ||||||| ||||||||| |   |||| | ||||| |||||||||||  ||| |||  |||||||||||| ||||||||||||    
T  37918904 gtactcccatcgtcccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgttgac 37918999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 30295927 - 30295993
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    ||||||| |||  ||| |||||||| |||||||| ||||||||||| |||| || ||||||||||||    
T  30295927 caaaatacaagttaaaattggtcaacaaaagttattgtatttgattcaaaaattataccaaatacat 30295993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 3564211 - 3564264
Alignment:
Q  155 aaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    |||||||||| |||||||||||||| ||| | ||||||||| ||| ||||||||    
T  3564211 aaaagttaatatatttgattaaaaagttggatcaaatacatcaacctttgttga 3564264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 46335549 - 46335501
Alignment:
Q  161 taatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||||  ||||| |||||||| |||| ||||||||||||||||||||    
T  46335549 taatgtaaatgatttaaaatttgaaccagatacattaacttttgttgac 46335501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 31469075 - 31469168
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  31469075 ccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgctt 31469168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 31469177 - 31469084
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||  ||| |||  ||||||||||||||||||||||||||| |||||||||    
T  31469177 ccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgctt 31469084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 10459257 - 10459363
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| | | ||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| || || ||| ||||| ||||||||| |     
T  10459257 tactccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatc 10459356  T
Q  215 tttgctt 221  Q
    |||||||    
T  10459357 tttgctt 10459363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 10459385 - 10459279
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| ||| ||||||| ||||||||  |||||||| | ||||| ||| || ||||  ||| |||| ||||||||||||||||||||||||||| ||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatt 10459286  T
Q  215 tttgctt 221  Q
    |||||||    
T  10459285 tttgctt 10459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 944771 - 944856
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||| |||||||||||||||| | | |||| ||||||||||||||||  || |||||||||||||||||||| ||||| |||||||    
T  944771 cgtttcaaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgac 944856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 19924304 - 19924390
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||||||| |||| |||| || ||||| |||||||||||||| || || |||||||||||||||||||| |||||  |||||||    
T  19924304 cgttccaaaatgtaagtaaaagttagtcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaacttacgttgacc 19924390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 16180541 - 16180448
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| || ||||||| ||   ||||||| || || ||||||| | |||||||||    
T  16180541 ccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgctt 16180448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 11386428 - 11386325
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    ||||| ||||||| |||||||||||||||||||| |||| | ||||| |||||||||||  ||| |||| |  ||||| ||||| ||||||||| || ||    
T  11386428 tactctcttcgtttcaaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatt 11386329  T
Q  215 tttg 218  Q
    ||||    
T  11386328 tttg 11386325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 17437245 - 17437166
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaataca 194  Q
    |||||||| ||| ||||||||||| ||||| || ||||| |||| |||||||||||  || |||||||||||||||||||    
T  17437245 tactccctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 43398944 - 43398862
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||| ||| ||||| || || || ||||||||||||||||| || |||||||||||||||||||| ||||| | ||||||    
T  43398944 ccaaaatctaaacaaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacc 43398862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 41374634 - 41374557
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    ||||||||||| |||| || |||||  ||||||||||||||||||| ||| ||| |||||||||||| ||||| ||||    
T  41374634 caaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgtt 41374557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 7932749 - 7932828
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||||||| || ||||| ||||||||| ||||||| || ||||||| || || |||||| ||||| |||||||    
T  7932749 aaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgac 7932828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 13724136 - 13724199
Alignment:
Q  148 ggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    |||||| ||||||| ||||||||| ||||||| ||| |||| |||||| |||||||||||||||    
T  13724136 ggtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 17794265 - 17794310
Alignment:
Q  71 ttgatgtattaaaaataaagaatacgacaacttctattgtaatgta 116  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||    
T  17794265 ttgatgtaccaaaaataaagaatatgacaacttctattgtaatgta 17794310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 41099030 - 41099075
Alignment:
Q  176 aaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgctt 41099075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 16564384 - 16564461
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||||||| |||||| | ||| |||| |||  ||| || |||||||||||||||||||| ||||| |||||||    
T  16564384 aaaatataagcaaaaattggtctacaaacgttagtgt--ttggttcaaaatttgtaccaaatacatcaacttatgttgac 16564461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 17794202 - 17794242
Alignment:
Q  10 aagaatattcttcctttaatgtttatgattttataatgtat 50  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  17794202 aagaatattcttcgtttaatgtttatgattttttaatgtat 17794242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 33615269 - 33615333
Alignment:
Q  142 aaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    |||||||||||| |||  ||||| ||||||||| |||||||||| ||||||||| ||||| ||||    
T  33615269 aaatttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 33615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 35311277 - 35311198
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||||| | ||| | |||||| ||||||||  |||||||||    
T  35311277 aaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatata-taacttatgttgacccatttttgctt 35311198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 37104892 - 37104932
Alignment:
Q  163 atgtatttgattaaaaatttgtaccaaatacattaactttt 203  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  37104892 atgtatttgattaagaatttgaaccaaatacattaactttt 37104932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 38935367 - 38935447
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    ||||||||||||||||| |  ||||| | ||||| |||||||||||  | | |||| || |||||||||||||||||||||    
T  38935367 ccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttga 38935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 16180439 - 16180522
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    ||||||| ||||||||| || ||||| | || || |||||||  ||  ||| |||| |||||||||||||||||||||||||||    
T  16180439 ccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgacca 16180522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 38935467 - 38935388
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||| ||||| ||  |||| ||||||||||||||||  || ||||| |||| ||||||||| ||||| |||||||    
T  38935467 aaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgac 38935388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 35693934 - 35693992
Alignment:
Q  140 caaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaa 198  Q
    ||||| |||||||| |||| |||||||||||| || |||||| ||| ||||||||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaa 35693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 41912188 - 41912102
Alignment:
Q  124 cgttccaaaatataagcaaaat-ttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||| |||||||||||||||  ||| |||| |||| ||||||||| || || |||||||||||||  || |||||||| |||||||    
T  41912188 cgttctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgac 41912102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 10069242 - 10069303
Alignment:
Q  149 gtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||| ||||||| |||||| || ||||||| ||| || | |||||||||||||||||||||    
T  10069242 gtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacc 10069303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 15660755 - 15660702
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttg 183  Q
    ||||||||||||||| ||| |||| | || ||||||||||||||| ||||||||    
T  15660755 aaaatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttg 15660702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 43398839 - 43398920
Alignment:
Q  125 gttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    |||| ||||| |||| |||| | |||||| | ||||| ||||||||| |  ||| |||| ||||||||||||||||||||||    
T  43398839 gttctaaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgtt 43398920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 2884262 - 2884330
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaa 198  Q
    |||||||||| |||| || ||||| |||| |||||||||||| || ||||||| || |||||| |||||    
T  2884262 aaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaa 2884330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 7932820 - 7932756
Alignment:
Q  157 aagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||| |||||| ||||  ||| |||| ||||||||| ||||||||||||||| | |||||||||    
T  7932820 aagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgctt 7932756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 23227321 - 23227369
Alignment:
Q  163 atgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    |||||| ||| ||| |||||| ||||||||||| |||||||||||||||    
T  23227321 atgtatctgactaagaatttggaccaaatacatcaacttttgttgacca 23227369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 16866501 - 16866414
Alignment:
Q  134 tataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| || |||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgctt 16866414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 16866392 - 16866498
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| | | ||||||||||||||||| ||| |||| ||||||||||||||| | |  ||| |||  ||||||||||||||||||||||||||| ||    
T  16866392 tactccctccatcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatt 16866491  T
Q  215 tttgctt 221  Q
    |||||||    
T  16866492 tttgctt 16866498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 6803311 - 6803376
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||||||||||||||||||||||||| ||||||||||||||||  || ||||||||||||||||||    
T  6803311 ccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatac 6803376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 30794447 - 30794513
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacatt 196  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||    
T  30794447 aaaatataagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacatt 30794513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 47967917 - 47967997
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    ||||||||||| ||||||| |||||| |||| || ||||||||  || ||||||||||| |||||||||||||| ||||||    
T  47967917 ccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttga 47967997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 44816472 - 44816538
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||| ||| ||||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||    
T  44816472 caaaatgtaaacaaaaattggccaacaaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 5026144 - 5026217
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    ||||||||||||||||| ||||| || |||||||||| |||||  |  |||||||||||||||||||| |||||    
T  5026144 ccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt 5026217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 18732083 - 18732003
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||| |||||||| ||||||||||||||||| || ||||||| ||||| |||||| || || |||||| |  |||||||||    
T  18732083 aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgctt 18732003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 27147590 - 27147646
Alignment:
Q  117 ctcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgat 173  Q
    |||||| ||||| |||||||||| |||| || ||||| |||||||||||||||||||    
T  27147590 ctccctccgttctaaaatataagtaaaaattagtcaacaaaagttaatgtatttgat 27147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 34515903 - 34515855
Alignment:
Q  136 taagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgt 184  Q
    |||||||||||||||||| ||||||||||||||||  || |||||||||    
T  34515903 taagcaaaatttggtcaataaaagttaatgtattttgttcaaaatttgt 34515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 18731988 - 18732083
Alignment:
Q  122 ttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccacttttt 217  Q
    ||||| ||||||||||||||||| | | |||| | || || |||||| || |  ||| |||| ||||||||||||||||||| ||||||| |||||    
T  18731988 ttcgtcccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 4259408 - 4259331
Alignment:
Q  132 aatataagcaaaatttggtc-aagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||||| ||| || || ||||||||||||||||| || ||||||| ||  |||||||||||||| |||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtatttg-ttcaaaatttatagtaaatacattaacttatgttgac 4259331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 27147655 - 27147622
Alignment:
Q  176 aaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||||||| |||||||||||||||||||||||    
T  27147655 aaaatttgtatcaaatacattaacttttgttgac 27147622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 1554955 - 1554883
Alignment:
Q  114 gtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtac 186  Q
    ||||||||| ||| | ||||||||| ||||| |||||||| ||||||| | ||||||  || |||||||||||    
T  1554955 gtactccctccgtcctaaaatataaacaaaaattggtcaataaaagttcacgtattttgtttaaaatttgtac 1554883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 46829161 - 46829062
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||| ||       ||||||||||||| |||||||||||||| ||    
T  46829161 tactcccttcgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttgataaa-------taccaaatacattgacttttgttgaccaatt 46829069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 32221588 - 32221483
Alignment:
Q  116 actcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccacttt 215  Q
    ||||||| |||  |||||| ||||||||| || ||||| ||||||||||||||||| || |||||||||||||||||||| || || || ||| || |||    
T  32221588 actccctccgtatcaaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaattt 32221489  T
Q  216 ttgctt 221  Q
    ||||||    
T  32221488 ttgctt 32221483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 31280161 - 31280239
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    |||||||||| |||| ||| |||| |||| |||||||||||| || ||||||||||||| ||||||||| || ||||||    
T  31280161 aaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttga 31280239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 47783067 - 47783149
Alignment:
Q  113 tgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||||| | | ||||||||| |||| |||| |||||||| ||||||||||||||||| || |||||||||| || ||||||    
T  47783067 tgtactccttccattccaaaatgtaagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacat 47783149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 26914563 - 26914482
Alignment:
Q  120 ccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    ||||||||||||||| ||||||||| ||| |||| |||| ||||||||| || || ||||||| ||| |||||||| |||||    
T  26914563 ccttcgttccaaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaactt 26914482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 46829055 - 46829139
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||||| |||||||| |||||| |||||||||| |     |||| |  ||||||||||||||||||||||||| |||||||||    
T  46829055 aaaatataagcaaaaattggtcaacaaaagtcaatgtatttggt-----atttat--caaatacattaacttttgttgaccaatttttgctt 46829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 32221474 - 32221567
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||| ||||||||| ||| |||  | || || ||||||||| |  ||| |||| ||||||||||||||||||||||||| | |||||||||    
T  32221474 ccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgctt 32221567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 47783188 - 47783095
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccacttttt 217  Q
    ||||||||||||||||||||| |  ||||| | |||   |||||| ||||  ||| |||| ||||||||||||||||||| ||||||| |||||    
T  47783188 cgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttttttgaccaattttt 47783095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 26439322 - 26439387
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||||||||||||  || | ||| |||| ||||||||||||||| |||||||||| |||||||||    
T  26439322 caaaatataagcaaatattagccaaaaaaa-ttaatgtatttgattcaaaatttgtatcaaatacat 26439387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 15282718 - 15282665
Alignment:
Q  155 aaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    |||||||||||||||||||| |||||||||| || || ||| ||||| ||||||    
T  15282718 aaaagttaatgtatttgatttaaaatttgtatcagattcatcaacttatgttga 15282665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 22756958 - 22756913
Alignment:
Q  150 tcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  22756958 tcaacaaaagttaacgtatttgattcaaaatttataccaaatacat 22756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 40905856 - 40905815
Alignment:
Q  180 tttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||| |||||||| |||||||||||||||||| |||||||||    
T  40905856 tttgaaccaaataaattaacttttgttgaccaatttttgctt 40905815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 30443826 - 30443762
Alignment:
Q  146 ttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||||  |||||| ||||||||| || | ||| |  ||||||||||||||||||||||||||    
T  30443826 ttggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacc 30443762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 55762983 - 55762905
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||||||| ||| ||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||| |||||||    
T  55762983 tactccctccgtcccaaaatataaacaaaaattggtcaacaaaagttaatatatttgattaaaaatttgtagcaaatac 55762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 55827360 - 55827282
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||| |||||| |||||||    
T  55827360 tactccattcgtcccaaaatataagcaaaaattggtcaacaaaagttaatatatttggttaaaattttgtagcaaatac 55827282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 12276826 - 12276917
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||||||| |||  |||||||  |||||||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||  |||||||||    
T  12276826 aaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgctt 12276917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 4423153 - 4423226
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    ||||||||||||  ||| ||| |||| |||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  4423153 ccaaaatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaactt 4423226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 36494421 - 36494465
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgatt 174  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  36494421 aaaatgtaagtaaaatttggtcaagaaaagttaatgtatttgatt 36494465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 54235325 - 54235261
Alignment:
Q  131 aaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||||| ||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacat 54235261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 12276928 - 12276843
Alignment:
Q  126 ttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    ||||||||||||||||||| | |||||| | ||||| ||||||||  |  ||| |||| | |||||||||||||||||| ||||||    
T  12276928 ttccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgacca 12276843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 2734167 - 2734226
Alignment:
Q  112 atgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttg 171  Q
    ||||||||| | ||| |||||||||||| |||| || ||||| |||||||||||||||||    
T  2734167 atgtactccttccgtcccaaaatataagtaaaaattagtcaacaaaagttaatgtatttg 2734226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 6924725 - 6924780
Alignment:
Q  155 aaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||| ||| || ||||| |||||||  ||||||||||||||||||||||||||    
T  6924725 aaaagttgatgcatctgattcaaaatttagaccaaatacattaacttttgttgacc 6924780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 18995239 - 18995146
Alignment:
Q  126 ttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||| ||||||||  || || || ||||||||||||||||| || |||||||||| || |||||| ||||| | ||||| |||||||||||    
T  18995239 ttccaaaatgtaagcaaacattagttaataaaagttaatgtatttggttcaaaatttgta-cagatacatcaacttat-ttgactactttttgctt 18995146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 30848711 - 30848640
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtac 186  Q
    |||||| | ||||| ||||| ||||||||| |||||||| |||| |||||||||||  || |||||||||||    
T  30848711 tactccatccgttctaaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtac 30848640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 24980616 - 24980722
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| ||||| ||||| |||| |||| | | |||| | ||||| |||||| |||   ||| ||||||| ||||||||||| |||||||||| | ||    
T  24980616 tactccctccgttctaaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatt 24980715  T
Q  215 tttgctt 221  Q
    |||||||    
T  24980716 tttgctt 24980722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 3249695 - 3249756
Alignment:
Q  134 tataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||| |||| |||||| | ||||||||||||||||| || ||||||| ||||| ||||||    
T  3249695 tataagtaaaaattggtcgacaaaagttaatgtatttggttcaaaatttataccagatacat 3249756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 39974024 - 39973991
Alignment:
Q  160 ttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||||||||||||||||||||||| |||||||||    
T  39974024 ttaatgtatttgattaaaaatttgaaccaaatac 39973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 39978375 - 39978342
Alignment:
Q  160 ttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||||||||||||||||||||||| |||||||||    
T  39978375 ttaatgtatttgattaaaaatttgaaccaaatac 39978342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 41615703 - 41615772
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    |||||| | |||| ||||||| ||||||||  |||||||||    |||||||||||||||||||||||||    
T  41615703 aaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttttgttgacc 41615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 54010085 - 54009997
Alignment:
Q  132 aatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||||||||| ||  | || |||| ||||||||||||||| ||||||| ||||||||| |   |||| ||||||||| |||||||||    
T  54010085 aatataagcaaaaatttataaacaaaacttaatgtatttgattcaaaatttataccaaataga-acacttatgttgaccaatttttgctt 54009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 55827293 - 55827338
Alignment:
Q  176 aaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||||  |||||||| |||||||||||||||||| |||||||||    
T  55827293 aaaattttaaccaaatatattaacttttgttgaccaatttttgctt 55827338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 4479669 - 4479609
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    |||| ||| |||| |||| ||||| ||||||||| ||||||| ||||| ||||||||||||    
T  4479669 aaaaattgatcaacaaaaattaatatatttgattcaaaatttataccagatacattaactt 4479609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4780394 - 4780358
Alignment:
Q  145 tttggtcaagaaaagttaatgtatttgattaaaaatt 181  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  4780394 tttggtcaacaaaagttaatgtatctgattaaaaatt 4780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 21606108 - 21606029
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgatt--aaaaatttgtaccaaata 192  Q
    ||||| || ||| |||||||||||||||||| ||||||  |||||||||||| | || ||  |||||| |||||||||||    
T  21606108 tactcactccgtcccaaaatataagcaaaatgtggtcagcaaaagttaatgtgtctggttcaaaaaatatgtaccaaata 21606029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 25855186 - 25855118
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||| |||| | ||||||  ||||||||| |||||||||    ||||||||||||||||||||||||    
T  25855186 aaaattgggtctacaaaagtcgatgtatttggttaaaaattcagtccaaatacattaacttttgttgac 25855118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 31323818 - 31323911
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||  || ||||||||||||| |||||| ||||| ||||||||  |||||||||    
T  31323818 ccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgctt 31323911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 28004612 - 28004708
Alignment:
Q  113 tgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||||||| ||||||||| |||||||| ||||||| ||| |||| |||||||||||| |  ||| ||||  ||||||||||||||||||||||||    
T  28004612 tgtactccctccgttccaaagtataagcataatttggccaacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgac 28004708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 31522726 - 31522647
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||||||||| ||||||    
T  31522726 tactcccttcgtcccaaaatgtaagcaaaatt-ggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacat 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 8437879 - 8437813
Alignment:
Q  129 caaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  8437879 caaaatataagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 28004729 - 28004650
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttg 207  Q
    ||||||||||||  ||| || ||||| |||||||||||||||||  | ||||||||||||||||||||||| ||||||||    
T  28004729 ccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgttg 28004650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 31323933 - 31323827
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    ||||||||  || ||||||| ||||||||| | |||||| | ||||| |||||| || |  ||| |||| || |||||||||||||||||||||||| ||    
T  31323933 tactccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatt 31323834  T
Q  215 tttgctt 221  Q
    |||||||    
T  31323833 tttgctt 31323827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 35003765 - 35003843
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    |||||||||| |||| ||||| || |||| ||||||||||||||| ||||||||||| ||||| || ||||| ||||||    
T  35003765 aaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttga 35003843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 9829898 - 9829976
Alignment:
Q  131 aaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||| |||| || ||||| |||| |||||||||||  || |||||||||||||||||||| || || |||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgac 9829976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 14446687 - 14446740
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtat 168  Q
    ||||||||| || ||||||| ||||||||| |||||||| ||||||||||||||    
T  14446687 tactccctttgtcccaaaatgtaagcaaaagttggtcaacaaaagttaatgtat 14446740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 28756663 - 28756704
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttg 171  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  28756663 aaaatataagcaaaatttggtcaacgaaagttaatgtatttg 28756704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 9675839 - 9675775
Alignment:
Q  157 aagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||||||||||| ||  ||||||||||||| || ||| ||||| ||||||||| |||||||||    
T  9675839 aagttaatgtatttaatacaaaatttgtaccagatgcatcaacttatgttgaccaatttttgctt 9675775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 30531182 - 30531262
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttga 208  Q
    ||||||| |||||||||   |||||| | ||||| ||||||||| || ||| |||||||||||||||| ||||| ||||||    
T  30531182 ccaaaatgtaagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttga 30531262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 30531299 - 30531191
Alignment:
Q  113 tgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccac 212  Q
    |||||||||| ||| ||||||| ||||||||| |   |||| | ||||| ||||||||| |  ||| |||| ||||||||||| ||||| ||||||||      
T  30531299 tgtactccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccg 30531200  T
Q  213 tttttgctt 221  Q
    |||||||||    
T  30531199 tttttgctt 30531191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 2282517 - 2282415
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||| ||| ||| |||| |||||||||||| || || || | || || |||||||||||  ||  |||| || |||||||||||||||||||||||| ||    
T  2282517 tacttcctccgtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaatt 2282418  T
Q  215 ttt 217  Q
    |||    
T  2282417 ttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 13422132 - 13422206
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaa 198  Q
    ||||| ||||| |||| |||| ||| |||| |||| ||||||||||||||| ||||||| ||||| ||| |||||    
T  13422132 cgttctaaaatgtaagtaaaaattgctcaataaaaattaatgtatttgatttaaaatttataccagatatattaa 13422206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 14446815 - 14446709
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactt 214  Q
    |||||||| ||| ||||||| |||| |||| ||||||||   ||||| |||||| | ||  ||| |||| || | ||||||||||||||||||||||  |    
T  14446815 tactccctccgtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttgttgaccaact 14446716  T
Q  215 tttgctt 221  Q
    |||||||    
T  14446715 tttgctt 14446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 6068999 - 6069036
Alignment:
Q  173 ttaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  6068999 ttaaaaatttagaccaaatacattaacttttgttgacc 6069036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 7549893 - 7549844
Alignment:
Q  125 gttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgatt 174  Q
    |||||||||||||||||||| |||||  | |||||||||| |||||||||    
T  7549893 gttccaaaatataagcaaaaattggtgtacaaaagttaatatatttgatt 7549844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 2282415 - 2282495
Alignment:
Q  141 aaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||| |||||||| ||||||||||||||||  || |||| ||||| ||||||||| || || |||| || | |||||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgctt 2282495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 7549781 - 7549825
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgatt 174  Q
    ||||||||||||||| |||||  | ||||||||||||||||||||    
T  7549781 aaaatataagcaaaaattggtgtacaaaagttaatgtatttgatt 7549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 565 - 661
Alignment:
Q  112 atgtactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||| ||| ||||| ||||||||||||||||| || |||||||||| |||||| |  ||| |||| || ||||||| ||||||||||||||    
T  565 atgtactccctccgtcccaaagtataagcaaaatttggt-aacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgac 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 682 - 604
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    ||||||||||||  ||| || ||||| |||||||| |||||||  || ||||||||||||||||| |||||||||||||    
T  682 ccaaaatataagtgaaaattagtcaacaaaagttattgtatttagttcaaaatttgtaccaaataaattaacttttgtt 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 33557879 - 33557788
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||| ||||| |||| ||| |||| ||||||||||||||||  || |||||||||| ||||||||| ||||| |||||| || |||||||||    
T  33557879 aaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgctt 33557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 7974892 - 7974810
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||   | |||||||||||||||||| | || || ||||||||    
T  7974892 ccaaaatataaacaaaaattggtcaataaaagttaatgtatttttgtcaaaatttgtaccaaatacgtcaatttatgttgacc 7974810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 13209977 - 13210050
Alignment:
Q  137 aagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacc 210  Q
    |||||||| ||| |||| ||||||||||||||||| || |||||||||| || |||||| ||||| ||||||||    
T  13209977 aagcaaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgacc 13210050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 35901139 - 35901060
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||||||||| | |||||| ||||||||||||||| |  | ||||||||||| || ||||| ||||| |||||||    
T  35901139 aaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgac 35901060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 13210050 - 13209977
Alignment:
Q  148 ggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttgctt 221  Q
    |||||| | ||||| |||||| ||||  ||| |||| |||||||||||||||||||||||| || |||||||||    
T  13210050 ggtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 8777775 - 8777851
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgtt 206  Q
    ||||||||| ||||| ||| |||| |||||||||| |||||| || ||||||| ||  |||||||||||||| ||||    
T  8777775 aaaatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgtt 8777851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 29111073 - 29110997
Alignment:
Q  120 ccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacatt 196  Q
    |||||||  |||||||||| ||||| ||| ||||  ||| |||||||||||| || ||||||| |||||||||||||    
T  29111073 ccttcgtctcaaaatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacatt 29110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 9548153 - 9548074
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||||| ||||| ||| |||| |||| ||| | |||||| || ||||||||||| |||||||| ||||| |||||||    
T  9548153 aaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgac 9548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 30171563 - 30171517
Alignment:
Q  163 atgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    |||||| ||||||| |||||| ||||| |||||||||||||||||||    
T  30171563 atgtatctgattaagaatttggaccaagtacattaacttttgttgac 30171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 8777846 - 8777785
Alignment:
Q  157 aagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccactttttg 218  Q
    |||||||||||||| ||  ||| |||| |||||||| ||||||||||||||| || ||||||    
T  8777846 aagttaatgtatttaatataaattttgaaccaaatatattaacttttgttgatcaatttttg 8777785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 15114629 - 15114686
Alignment:
Q  136 taagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatac 193  Q
    |||| |||| |||||||| |||| ||||||||||||||| ||||||||| | ||||||    
T  15114629 taagaaaaaattggtcaacaaaaattaatgtatttgattcaaaatttgttctaaatac 15114686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 28725590 - 28725670
Alignment:
Q  128 ccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgac 209  Q
    ||||||| ||||||||| |||||||| |||| ||| ||||||||||| | ||||| || || |||||| ||||||| |||||    
T  28725590 ccaaaatgtaagcaaaaattggtcaataaaatttattgtatttgattcagaatttata-cagatacatcaacttttattgac 28725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 37628019 - 37627943
Alignment:
Q  124 cgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    ||||||||||||||| ||||| ||  | || |||||||||| | ||||||| |||||||||| ||||||||| |||||    
T  37628019 cgttccaaaatataaacaaaaatttattaacaaaagttaatat-tttgattcaaaatttgtatcaaatacatcaactt 37627943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 13165 - 13251
Alignment:
Q  115 tactcccttcgttccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaactt 201  Q
    |||||||| | ||||||||| ||||||||| | | |||| ||||||||||||||||| || ||||||||||| | |||||| |||||    
T  13165 tactccctccattccaaaatgtaagcaaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacatcaactt 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 94952 - 95039
Alignment:
Q  130 aaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgaccacttttt 217  Q
    ||||| ||||| ||| ||| |||| |||| ||||||||||   || |||||||||||||||||||| ||||| ||||||||| |||||    
T  94952 aaaatgtaagcgaaaattgatcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttt 95039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 20 - 82
Alignment:
Q  149 gtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacattaacttttgttgacca 211  Q
    ||||| ||||||| ||||||||| ||||||||||   |||||||||| |||||||||||||||    
T  20 gtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgacca 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 37936 - 37982
Alignment:
Q  149 gtcaagaaaagttaatgtatttgattaaaaatttgtaccaaatacat 195  Q
    ||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  37936 gtcaacaaaagttaatgtatttggtttaaaatttataccaaatacat 37982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 28170 - 28234
Alignment:
Q  127 tccaaaatataagcaaaatttggtcaagaaaagttaatgtatttgattaaaaatttgtaccaaat 191  Q
    ||||||||||||  |||| ||| | || ||||||||||||||||| || |||||| |||||||||    
T  28170 tccaaaatataaataaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat 28234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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