View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_high_11 (Length: 370)
Name: NF7551_high_11
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 60 - 354
Target Start/End: Complemental strand, 38930983 - 38930688
Alignment:
| Q |
60 |
tggtatcattttgatggttgtgtttttctatctggcctaagatgactgagggcctcattaagaaaacaccatcaatttg-taagacataatctaggtaaa |
158 |
Q |
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| T |
38930983 |
tggtatcattttgatggttatgtttttctatctggcctaagacgactgagggcctcattaagaaaataccatcaatttggtaagacataatttaggtaaa |
38930884 |
T |
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| Q |
159 |
attctttgtaaagcaaccctaaattctttaaacgattttaaaatttgttgataatcttagcatatgtttagtgtgaatgagttagtcatcaaggttaagg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38930883 |
attctttgtaaagcaaccctaaattctttaaacgattttaaaatttgttgataatcttagcatatgtttagtgtgaatgagttagtcatcaaggttaagg |
38930784 |
T |
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| Q |
259 |
ttgtatactaagcctatattannnnnnnnaacaaaccaaaataaaatatattaaccacacaaatgttctcctatgcacaagaagtgtgtacataaa |
354 |
Q |
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| T |
38930783 |
ttgtatactaagcctatatttttttttttaataaaccaaaataaaatatattaaccacacaaatgttctcctatgcacaagaagtgtgtacataaa |
38930688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 38931111 - 38931067
Alignment:
| Q |
16 |
atttaccatataatttttaaatttagttgtttttatcaaatatat |
60 |
Q |
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| T |
38931111 |
atttaccatataatttttaaatttagttgtttttatcaaatatat |
38931067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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