View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7551_high_12 (Length: 348)

Name: NF7551_high_12
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7551_high_12
NF7551_high_12
[»] chr5 (21 HSPs)
chr5 (51-285)||(40937875-40938113)
chr5 (152-229)||(42199302-42199379)
chr5 (152-248)||(31636109-31636205)
chr5 (1-49)||(40938177-40938225)
chr5 (57-112)||(39322153-39322207)
chr5 (164-248)||(33667213-33667297)
chr5 (57-128)||(28005660-28005730)
chr5 (82-116)||(14749432-14749466)
chr5 (155-229)||(28676611-28676685)
chr5 (168-229)||(4496400-4496461)
chr5 (82-119)||(5305761-5305798)
chr5 (82-119)||(6859503-6859540)
chr5 (152-229)||(10082928-10083005)
chr5 (168-229)||(12492589-12492650)
chr5 (152-193)||(14667823-14667864)
chr5 (82-119)||(15489615-15489652)
chr5 (83-128)||(18698907-18698952)
chr5 (297-326)||(40937828-40937857)
chr5 (56-84)||(2066165-2066193)
chr5 (58-86)||(7678644-7678672)
chr5 (58-86)||(14667937-14667965)
[»] chr1 (27 HSPs)
chr1 (58-198)||(5338771-5338907)
chr1 (57-229)||(13827667-13827836)
chr1 (82-253)||(38868874-38869041)
chr1 (56-106)||(109079-109129)
chr1 (59-193)||(43375687-43375817)
chr1 (152-229)||(40416387-40416464)
chr1 (152-239)||(14226018-14226105)
chr1 (82-253)||(2544591-2544757)
chr1 (57-119)||(17233858-17233919)
chr1 (152-198)||(17640242-17640288)
chr1 (82-128)||(44008692-44008738)
chr1 (152-193)||(19908228-19908269)
chr1 (152-229)||(43423735-43423812)
chr1 (152-229)||(48431595-48431672)
chr1 (84-128)||(6025718-6025762)
chr1 (56-104)||(17640153-17640200)
chr1 (57-120)||(37591127-37591190)
chr1 (82-128)||(30834100-30834146)
chr1 (151-189)||(35828738-35828776)
chr1 (82-128)||(42501221-42501267)
chr1 (82-128)||(52442651-52442697)
chr1 (168-229)||(1210761-1210822)
chr1 (168-229)||(34792554-34792615)
chr1 (168-229)||(38807876-38807937)
chr1 (168-229)||(51602072-51602133)
chr1 (154-198)||(10569258-10569302)
chr1 (57-85)||(30834064-30834092)
[»] chr2 (12 HSPs)
chr2 (152-244)||(23714450-23714542)
chr2 (152-244)||(24102122-24102214)
chr2 (61-119)||(13240854-13240911)
chr2 (152-229)||(13240934-13241011)
chr2 (157-219)||(9556563-9556625)
chr2 (82-193)||(18958963-18959070)
chr2 (168-230)||(24583837-24583899)
chr2 (82-128)||(26784463-26784509)
chr2 (58-119)||(11412842-11412901)
chr2 (168-229)||(38452890-38452951)
chr2 (152-248)||(12141541-12141637)
chr2 (83-119)||(45436964-45437000)
[»] chr7 (26 HSPs)
chr7 (82-227)||(38135336-38135476)
chr7 (152-255)||(42187460-42187563)
chr7 (84-192)||(48202827-48202931)
chr7 (58-136)||(28542032-28542109)
chr7 (152-228)||(12966039-12966115)
chr7 (82-198)||(28628056-28628168)
chr7 (58-119)||(36101865-36101925)
chr7 (82-229)||(47848690-47848833)
chr7 (168-229)||(12841480-12841541)
chr7 (168-229)||(13859213-13859274)
chr7 (57-86)||(30144941-30144970)
chr7 (82-119)||(30814794-30814831)
chr7 (168-229)||(35906406-35906467)
chr7 (152-253)||(36514396-36514497)
chr7 (168-229)||(44855377-44855438)
chr7 (82-119)||(45601598-45601635)
chr7 (168-229)||(49029292-49029353)
chr7 (58-86)||(1569182-1569210)
chr7 (58-86)||(24549776-24549804)
chr7 (59-135)||(27893652-27893727)
chr7 (152-248)||(28020961-28021057)
chr7 (82-118)||(28562489-28562525)
chr7 (58-86)||(30664734-30664762)
chr7 (168-244)||(31682807-31682883)
chr7 (167-247)||(40169647-40169727)
chr7 (58-86)||(45601642-45601670)
[»] chr4 (37 HSPs)
chr4 (58-119)||(31339657-31339718)
chr4 (152-253)||(54470199-54470300)
chr4 (168-229)||(33191053-33191114)
chr4 (152-198)||(28497536-28497582)
chr4 (168-229)||(33227225-33227286)
chr4 (82-119)||(49987530-49987567)
chr4 (152-248)||(17900477-17900573)
chr4 (58-110)||(31459137-31459188)
chr4 (54-86)||(44047455-44047487)
chr4 (82-126)||(44719487-44719531)
chr4 (168-215)||(8286461-8286508)
chr4 (152-227)||(20605215-20605290)
chr4 (152-219)||(47372677-47372744)
chr4 (94-229)||(29398834-29398965)
chr4 (82-119)||(7682033-7682070)
chr4 (82-119)||(13805388-13805425)
chr4 (57-86)||(22420804-22420833)
chr4 (155-192)||(31339589-31339626)
chr4 (168-229)||(31960019-31960080)
chr4 (152-229)||(35555836-35555913)
chr4 (57-86)||(41192227-41192256)
chr4 (160-229)||(41192852-41192921)
chr4 (168-229)||(43433940-43434001)
chr4 (82-119)||(45569132-45569169)
chr4 (152-229)||(46715561-46715638)
chr4 (57-86)||(47147539-47147568)
chr4 (168-229)||(50286978-50287039)
chr4 (168-229)||(52569720-52569781)
chr4 (86-119)||(53540412-53540445)
chr4 (168-229)||(53707810-53707871)
chr4 (168-245)||(56375290-56375367)
chr4 (58-86)||(25574990-25575018)
chr4 (58-86)||(26024938-26024966)
chr4 (58-86)||(26025007-26025035)
chr4 (82-118)||(35690394-35690430)
chr4 (88-120)||(47611848-47611880)
chr4 (58-86)||(50680906-50680934)
[»] chr8 (19 HSPs)
chr8 (82-182)||(38178383-38178479)
chr8 (82-133)||(45512618-45512669)
chr8 (82-119)||(35643729-35643766)
chr8 (82-126)||(4011198-4011242)
chr8 (67-247)||(9695629-9695804)
chr8 (82-198)||(29520697-29520808)
chr8 (59-133)||(41971879-41971952)
chr8 (57-86)||(1549478-1549507)
chr8 (82-119)||(2216410-2216447)
chr8 (57-86)||(10079994-10080023)
chr8 (168-229)||(12491343-12491404)
chr8 (168-229)||(36545165-36545226)
chr8 (57-86)||(38483056-38483085)
chr8 (154-198)||(79090-79134)
chr8 (58-86)||(30783130-30783158)
chr8 (57-85)||(39388950-39388978)
chr8 (152-228)||(39953453-39953529)
chr8 (82-119)||(41444463-41444502)
chr8 (82-118)||(45419358-45419394)
[»] chr3 (19 HSPs)
chr3 (154-253)||(36820152-36820251)
chr3 (152-229)||(21200564-21200641)
chr3 (82-128)||(31261065-31261111)
chr3 (82-118)||(54365098-54365134)
chr3 (82-198)||(39600804-39600916)
chr3 (158-229)||(46140448-46140519)
chr3 (58-112)||(19758028-19758081)
chr3 (58-119)||(29475810-29475880)
chr3 (153-191)||(30572988-30573026)
chr3 (56-86)||(41452826-41452856)
chr3 (159-253)||(54128370-54128464)
chr3 (152-193)||(2968263-2968304)
chr3 (58-111)||(19737126-19737178)
chr3 (168-229)||(28245453-28245514)
chr3 (82-119)||(33755465-33755502)
chr3 (58-119)||(36304100-36304160)
chr3 (176-228)||(31453151-31453203)
chr3 (58-118)||(44571562-44571621)
chr3 (82-118)||(50960760-50960796)
[»] chr6 (7 HSPs)
chr6 (152-229)||(2079356-2079433)
chr6 (82-119)||(34628-34665)
chr6 (152-197)||(21870254-21870299)
chr6 (57-118)||(3963922-3963984)
chr6 (152-198)||(6293575-6293621)
chr6 (82-119)||(1747764-1747801)
chr6 (82-118)||(9593831-9593867)
[»] scaffold0050 (1 HSPs)
scaffold0050 (82-119)||(58349-58386)
[»] scaffold0018 (2 HSPs)
scaffold0018 (168-229)||(31484-31545)
scaffold0018 (152-253)||(44057-44158)
[»] scaffold0015 (1 HSPs)
scaffold0015 (88-120)||(66658-66690)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 40938113 - 40937875
Alignment:
Q  51 ccatattatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40938113 ccatattatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgactatccttggtatcatctactc 40938014  T
Q  151 tctctccttactacataatctacgg----gtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccacccca 246  Q
    ||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40938013 tctctccttactacataatctacaggtctgtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctacgatatgtgccacccca 40937914  T
Q  247 acactcttttcatttctaatcataaatttctaaacttgt 285  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40937913 acactcttttcatttctaatcataaatttctaaacttgt 40937875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 42199379 - 42199302
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||||    
T  42199379 ctctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 42199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 31636109 - 31636205
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaac 248  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |  |||||||| |||| ||| |||||||||  ||| |||| ||||||||    
T  31636109 ctctccttactacaacatccacgggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaac 31636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40938225 - 40938177
Alignment:
Q  1 ttgaatatccaaaacagaagcaatcataaccctaaattttaaaacttac 49  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40938225 ttgaatatccaaaatagaagcaaccataaccctaaattttaaaacttac 40938177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 39322153 - 39322207
Alignment:
Q  57 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctct 112  Q
    |||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||    
T  39322153 tatccaactcattaatctttagatctttct-taatagtttttctaggtcttcctct 39322207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 33667297 - 33667213
Alignment:
Q  164 cataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaac 248  Q
    ||||||| || ||||||||||||||||||| |||| |  |||||||| |||| ||| |||||||||  ||| |||| ||||||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaac 33667213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 28005730 - 28005660
Alignment:
Q  57 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    |||| ||||||||||||||||||||||||| | ||| |||||||||||||| | | |||| ||| |||||||    
T  28005730 tatcaaactcattaatctctagatctttct-taatagtttttctaggtctttcccggcctataatgatttga 28005660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 14749466 - 14749432
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcct 116  Q
    ||||||||||| |||||||||||||||||||||||    
T  14749466 tttctcttatagtttttctaggtcttcctctgcct 14749432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 28676685 - 28676611
Alignment:
Q  155 tccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||||| ||||||| ||  ||||||||||||||||||| |||| |  |||| ||| |||||||| |||||||||    
T  28676685 tccttacgacataatttaaaggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttcta 28676611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 4496461 - 4496400
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  4496461 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccagcttttcta 4496400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 5305798 - 5305761
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  5305798 tttctcatatagtttttctaggtcttcctctgcctcta 5305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 6859540 - 6859503
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  6859540 tttctcttatagtttttctaggtcttcctcttcctcta 6859503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 10082928 - 10083005
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||| |||||||| |||| ||  |||||||||||||||||| |||| |  |||||||| |||| ||| |||||||||    
T  10082928 ctctctttactacagaatccacaagtcttctctctacatgccgaaaccacttaagtctagtttctaccatcttttcta 10083005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 12492589 - 12492650
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  12492589 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 12492650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 14667864 - 14667823
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcc 193  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  14667864 ctctccttactacataatgtacatgtcttctctctacatgcc 14667823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 15489615 - 15489652
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  15489615 tttctcttattgtttttctaggtcttcctctgcctcta 15489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 18698952 - 18698907
Alignment:
Q  83 ttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    |||||||||| ||||||||||| ||||||||||||||  |||||||    
T  18698952 ttctcttatagtttttctaggtattcctctgcctctagtgatttga 18698907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 40937857 - 40937828
Alignment:
Q  297 cctatagccctaggtaaatcctacagcacg 326  Q
    ||||||||||||||||||||||||||||||    
T  40937857 cctatagccctaggtaaatcctacagcacg 40937828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 2066193 - 2066165
Alignment:
Q  56 ttatccaactcattaatctctagatcttt 84  Q
    |||||||||||||||||||||||||||||    
T  2066193 ttatccaactcattaatctctagatcttt 2066165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 7678672 - 7678644
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  7678672 atccaactcattaatctctagatctttct 7678644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 14667965 - 14667937
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  14667965 atccaactcattaatctctagatctttct 14667937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 5338907 - 5338771
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctcc 157  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||  ||| ||||||||||   | | |||||    ||||||    
T  5338907 atccaactcattaatctctagatctttctcttatagtttttctaggtctacttctgcctctagtgatctgaatatcctccatctgatcta----ctctcc 5338812  T
Q  158 ttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    |||||| |  |||||| |||||||||||| |||||| ||||    
T  5338811 ttactaaagcatctacaggtcttctctctgcatgcccaaac 5338771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 13827667 - 13827836
Alignment:
Q  57 tatccaactcattaatctctagatctttctctta-tattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctct 155  Q
    |||||||||||||||||||||||  ||| ||||| || ||||||||||||||||||||||||||  ||| ||| |||  |   ||| |||||    ||||    
T  13827667 tatccaactcattaatctctagacttttttcttaatagtttttctaggtcttcctctgcctctagtgatctgactatgttccatatgatcta----ctct 13827762  T
Q  156 ccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||| |||||||   ||||||||||||||| | |||| |  | |  ||| ||||||||||||||||||    
T  13827763 ccttactacagaatctacacttcttctctctacatgtccaaaccaccttaccctagtttccaccgtcttttcta 13827836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 38869041 - 38868874
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactct-ctctccttactacataatctacgggtctt 180  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||| || |||      |||||| ||| |||||||  ||| | |||||||  || ||    
T  38869041 tttctcttatagtttttctaggtcttcttctgcctctaatgatttgactaccct-----ccatctaatctactctcctcgctagagaatctactagtgtt 38868947  T
Q  181 ctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacactct 253  Q
    ||||||||||||| |||| |  |||| | | |||||||| |||||||||||||| |||| || ||||| ||||    
T  38868946 ctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggtgctactccaaccctct 38868874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 109079 - 109129
Alignment:
Q  56 ttatccaactcattaatctctagatctttctcttatattttttctaggtct 106  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  109079 ttatccaactcattaatgtctatatctttctcttatagtttttctaggtct 109129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 43375687 - 43375817
Alignment:
Q  59 tccaactcattaatctctagatctttctcttata-ttttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctcc 157  Q
    ||||||||||||||||||| |||||||| | ||| || ||||||||||| ||||||||||||  ||||| | |||||    | | |||||||||||        
T  43375687 tccaactcattaatctctaaatctttct-taatagttatttctaggtctccctctgcctctagtgattttactatccaccatctgatctactctct---- 43375781  T
Q  158 ttactacataatctacgggtcttctctctacatgcc 193  Q
    |||||||||||||||  |||||||||||||||||||    
T  43375782 ttactacataatctataggtcttctctctacatgcc 43375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 40416464 - 40416387
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||| |  |||| ||  |||||||| |||||||||    
T  40416464 ctctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttcta 40416387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 14226018 - 14226105
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgc 239  Q
    |||||||||||||| ||||||| ||  | ||||||||||||| |||| |  |||| ||| |||||||| |||||||||||||| ||||    
T  14226018 ctctccttactacaaaatctacaggaatcctctctacatgcccaaaccacctaagcctattttccaccatcttttctatgataggtgc 14226105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 2544757 - 2544591
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||| ||| ||||||||||||||||||| ||||||  | ||||| ||||||   | | ||||||||||    ||||||| | ||||||  |||||||    
T  2544757 tttctctgatagtttttctaggtcttcctctacctctagtg-tttgactatcctccatctgatctactctc----cttactatagaatctataggtcttc 2544663  T
Q  182 tctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacactct 253  Q
    |||||||||| | |||| |  |||||||  |||||||| |||||||||  ||| |||| |||||||| ||||    
T  2544662 tctctacatgtccaaaccacctaagtctgttttccaccatcttttctactataggtgctaccccaactctct 2544591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 17233858 - 17233919
Alignment:
Q  57 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||| || ||||||||| | ||| ||||||||||||||||||||||||||    
T  17233858 tatccaactcaataatcgctggatctttct-taatagtttttctaggtcttcctctgcctcta 17233919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 17640242 - 17640288
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  17640242 ctctccttactacaaaatccacgggtctcctctctacatgcctaaac 17640288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 44008738 - 44008692
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||    
T  44008738 tttctcttagattttttctaggtcttcctctgcctctagtgatttga 44008692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 19908228 - 19908269
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcc 193  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  19908228 ctctccttactacataatctacaggttttctctctacatgcc 19908269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 43423812 - 43423735
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||| |||||||||||||||||  |||||||||||||||| | |||| |  |||| ||| |||||||| |||||||||    
T  43423812 ctctacttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttcta 43423735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 48431595 - 48431672
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||| |||||||| |||||||  |||||||||||||||||| |||| |  |||| ||| |||||||| |||||||||    
T  48431595 ctctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttcta 48431672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 6025762 - 6025718
Alignment:
Q  84 tctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||    
T  6025762 tctcttatagtttttctaggtcttcctctgcctctagtgatttga 6025718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 17640153 - 17640200
Alignment:
Q  56 ttatccaactcattaatctctagatctttctcttatattttttctaggt 104  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  17640153 ttatccaactcattaatctctagatccttc-cttatagtttttctaggt 17640200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 37591190 - 37591127
Alignment:
Q  57 tatccaactcattaatctctagatctttctctta-tattttttctaggtcttcctctgcctctaa 120  Q
    |||||||||||||||||||||||| ||| ||||| || |||||| ||||||||||||||| ||||    
T  37591190 tatccaactcattaatctctagattttt-tcttaatagtttttccaggtcttcctctgccactaa 37591127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 30834100 - 30834146
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    |||||||||||  |||||||||||||||||| |||||| ||||||||    
T  30834100 tttctcttatagcttttctaggtcttcctctccctctatcgatttga 30834146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 35828738 - 35828776
Alignment:
Q  151 tctctccttactacataatctacgggtcttctctctaca 189  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35828738 tctctccttactacataatctataggtcttctctctaca 35828776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 42501267 - 42501221
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    ||||||||||| ||||||||||| ||||||| ||||||| |||||||    
T  42501267 tttctcttatagtttttctaggttttcctctacctctaatgatttga 42501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 52442651 - 52442697
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    |||||||||||||| |||||||||||||||| ||||||  |||||||    
T  52442651 tttctcttatatttgttctaggtcttcctctacctctagagatttga 52442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 1210822 - 1210761
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  1210822 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 1210761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 34792554 - 34792615
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  34792554 atctacgggtcttctctctacatgcccaaaccatctaagcctactttctaccaacttttcta 34792615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 38807876 - 38807937
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||| ||||||||||| ||||||||||||| || |||||||| |||| |||  ||||||||    
T  38807876 atctaagggtcttctctttacatgcctaaaccatctaagtctattttctaccaacttttcta 38807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 51602133 - 51602072
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  51602133 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 51602072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 10569258 - 10569302
Alignment:
Q  154 ctccttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    |||| ||||||| ||||||| ||||||||||||||||||| ||||    
T  10569258 ctccgtactacagaatctacaggtcttctctctacatgcccaaac 10569302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 30834064 - 30834092
Alignment:
Q  57 tatccaactcattaatctctagatctttc 85  Q
    |||||||||||||||||||||||||||||    
T  30834064 tatccaactcattaatctctagatctttc 30834092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 23714450 - 23714542
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccc 244  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||| |  |||||||| |||||||| |||||||||  |||||||| ||||    
T  23714450 ctctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctaccc 23714542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 24102122 - 24102214
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccc 244  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||| |  |||||||| |||||||| |||||||||  |||||||| ||||    
T  24102122 ctctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctaccc 24102214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 13240854 - 13240911
Alignment:
Q  61 caactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  13240854 caactcgttaatctctagatctttct-taatagtttttctaggtcttcctctgcctcta 13240911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 13240934 - 13241011
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||| | |||||||  |||||||||||||||||| |||| |  |||| ||| |||||||| |||||||||    
T  13240934 ctctccttactaaagaatctacatgtcttctctctacatgcccaaaccacctaagcctagtttccaccatcttttcta 13241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 9556563 - 9556625
Alignment:
Q  157 cttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccacc 219  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |  |||| ||| ||||||||    
T  9556563 cttactacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccacc 9556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 18959070 - 18958963
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    |||||||| || ||||||||||||||||||||||||| | ||| ||| ||||||   | | |||||    |||||||||||||| || || | |||||||    
T  18959070 tttctcttgtagtttttctaggtcttcctctgcctctgatgatctgactatcctccatctgatcta----ctctccttactacaaaagctgcaggtcttc 18958975  T
Q  182 tctctacatgcc 193  Q
    ||||| ||||||    
T  18958974 tctctgcatgcc 18958963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 24583837 - 24583899
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctat 230  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  |||||||||    
T  24583837 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctat 24583899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 26784463 - 26784509
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    ||||||||||| |||||||||||||| |||||||||||  |||||||    
T  26784463 tttctcttatagtttttctaggtctttctctgcctctagtgatttga 26784509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 11412901 - 11412842
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||| |||||||| |||||    
T  11412901 atccaactcattaatctcta-atctttc-ctaatagtttttctaggttttcctctggctcta 11412842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 38452890 - 38452951
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  38452890 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 38452951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 12141637 - 12141541
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaac 248  Q
    |||||||||||| | ||||||| |||||||| ||||| |||| |||| |  |||| ||  |||||||| |||||||||  ||| |||| ||||||||    
T  12141637 ctctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttttctactataggtgctaccccaac 12141541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 45437000 - 45436964
Alignment:
Q  83 ttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  45437000 ttctcttataatttttataggtcttcctctgcctcta 45436964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 38135336 - 38135476
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||||      |||||  ||| ||||||||||||| ||||||| |||||||    
T  38135336 tttctcttatactttttctaggtcttcatctgcctctaatgatctgactatcct-----ccatctgatctatctccttactacaaaatctactggtcttc 38135430  T
Q  182 tctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 227  Q
    | |||||||| | |||| |  |||| ||| |||||||| |||||||    
T  38135431 tgtctacatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 42187563 - 42187460
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacact 251  Q
    |||||||||||||||||||||| || ||||||| |||||||| |||| |  |||| ||| |||||||| |||||||||| ||| |||| ||||| || ||    
T  42187563 ctctccttactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctaccccgactct 42187464  T
Q  252 cttt 255  Q
    ||||    
T  42187463 cttt 42187460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 48202827 - 48202931
Alignment:
Q  84 tctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttctc 183  Q
    ||||||||| |||||||||| |||||||||||| ||| ||||||| |||||    ||| |||||    |||||||||||||| |||||||  ||||||||    
T  48202827 tctcttatagtttttctaggccttcctctgcctataatgatttgactatccaccatatgatcta----ctctccttactacagaatctacaagtcttctc 48202922  T
Q  184 tctacatgc 192  Q
    |||||||||    
T  48202923 tctacatgc 48202931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 28542032 - 28542109
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatcctt 136  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||||||||||| ||||||||  ||| ||| |||||||    
T  28542032 atccaactcattaatctctaaatctttct-taatagtttttctaggtcttcctatgcctctagtgatctgattatcctt 28542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 12966115 - 12966039
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttct 228  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||| |  ||||  || |||||||| ||||||||    
T  12966115 ctctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttct 12966039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 28628056 - 28628168
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| ||||||||||||||||||| |||||   ||||||| ||||||   |   |||||||||    |||||||||||||||||| ||| |||    
T  28628056 tttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatctactct----ccttactacataatctacaggttttc 28628151  T
Q  182 tctctacatgcctaaac 198  Q
    ||| |||||||| ||||    
T  28628152 tctttacatgcccaaac 28628168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 36101865 - 36101925
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||||||||| || |||||||  | ||| ||||||||||||||||||||||||||    
T  36101865 atccaactcattaatctataaatctttca-taataatttttctaggtcttcctctgcctcta 36101925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 47848833 - 47848690
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||  || ||||||   | | |||||    ||||||||| |||| ||| |||  ||||||    
T  47848833 tttctcttatagtttttctagttcttcctctgcctctagtgatcagactatcctccatctgatcta----ctctccttagtacagaatttacaagtcttc 47848738  T
Q  182 tctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||| ||||||| |||| |  |||| ||| |||||||| |||||||||    
T  47848737 tctcgacatgcccaaaccacctaagcctattttccaccatcttttcta 47848690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 12841480 - 12841541
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  12841480 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 12841541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 13859213 - 13859274
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  13859213 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 13859274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 30144970 - 30144941
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  30144970 tatccaactcattaatctctagatctttct 30144941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 30814794 - 30814831
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  30814794 tttctcttatagtgtttctaggtcttcctctgcctcta 30814831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 35906406 - 35906467
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  35906406 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 35906467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 36514396 - 36514497
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacact 251  Q
    |||||| ||||||| |||| ||  ||| |||||||||||||| |||| |  |||||||| |||| ||| |||||||||  ||| |||| |||||||| ||    
T  36514396 ctctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactct 36514495  T
Q  252 ct 253  Q
    ||    
T  36514496 ct 36514497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44855377 - 44855438
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  44855377 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 44855438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 45601635 - 45601598
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  45601635 tttctcttatagtttttctaggtcttcctctacctcta 45601598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 49029353 - 49029292
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  49029353 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 49029292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 1569210 - 1569182
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  1569210 atccaactcattaatctctagatctttct 1569182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 24549776 - 24549804
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  24549776 atccaactcattaatctctagatctttct 24549804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 27893652 - 27893727
Alignment:
Q  59 tccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatcct 135  Q
    |||| |||||||||||||| |||||||| | ||| |||||||||| ||||||||  |||||  ||| ||||||||||    
T  27893652 tccagctcattaatctctaaatctttct-taatagtttttctaggacttcctctatctctagtgatctgaatatcct 27893727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 28021057 - 28020961
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaac 248  Q
    ||||||||| |||| || ||||   ||||||||||||||||| |||| |  |||| | | |||||||| ||||||||| |||| |||| ||||||||    
T  28021057 ctctccttattacagaacctacaaatcttctctctacatgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgctaccccaac 28020961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 28562489 - 28562525
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    |||||||||||||||||||||||| |||||| |||||    
T  28562489 tttctcttatattttttctaggtcatcctctacctct 28562525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 30664762 - 30664734
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  30664762 atccaactcattaatctctagatctttct 30664734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 31682807 - 31682883
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccc 244  Q
    ||||||||||||||||||||||| || |||| || |||| ||| |||| |||  ||||||||  |||||||| ||||    
T  31682807 atctacgggtcttctctctacatacccaaaccatctaagcctattttctaccaacttttctactatatgtgctaccc 31682883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 40169727 - 40169647
Alignment:
Q  167 aatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaa 247  Q
    |||||||| ||||| |||||||||||| |||| |  |||| ||| |||||||| |||||||||  ||| |||| |||||||    
T  40169727 aatctacgtgtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctaccccaa 40169647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 45601670 - 45601642
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  45601670 atccaactcattaatctctagatctttct 45601642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 31339718 - 31339657
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  31339718 atccaactcattaatctctagataattctcatatagtttttctaggtcttcctctgcctcta 31339657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 54470300 - 54470199
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacact 251  Q
    |||||||||||||||||| |||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||||  ||| |||| |||||||| ||    
T  54470300 ctctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactct 54470201  T
Q  252 ct 253  Q
    ||    
T  54470200 ct 54470199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 33191053 - 33191114
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||| |||  ||||||||    
T  33191053 atctacgggtcttctctctacatgcccaaacaatctaagtctattttctaccaacttttcta 33191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 28497582 - 28497536
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||    
T  28497582 ctctccttactacataatctacaagtcttctctctacatgcccaaac 28497536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 33227286 - 33227225
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| ||||||| |||| ||| |||| |||  ||||||||    
T  33227286 atctacgggtcttctctctacatgcccaaacaatctaagcctattttctaccaacttttcta 33227225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 49987567 - 49987530
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49987567 tttctcttatagtttttctaggtcttcctctgcctcta 49987530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 17900573 - 17900477
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaac 248  Q
    |||||||  |||||||||| || |||||||||||||| |||| |||| |  | |||||| |||| |||||||||||||  ||| |||| ||||||||    
T  17900573 ctctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccccaac 17900477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 31459188 - 31459137
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcct 110  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||||||||||    
T  31459188 atccaactcattaatctctaaatctttc-ctaatagtttttctaggtcttcct 31459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 44047455 - 44047487
Alignment:
Q  54 tattatccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||||||    
T  44047455 tattatccaactcattaatctctagatctttct 44047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 44719487 - 44719531
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgattt 126  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||    
T  44719487 tttcttttatattttttctaggtcttcctcagcctctaatgattt 44719531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 8286508 - 8286461
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttc 215  Q
    ||||||||||||||||||||||||||||||| || |||| ||| ||||    
T  8286508 atctacgggtcttctctctacatgcctaaaccatctaagcctattttc 8286461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 20605290 - 20605215
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 227  Q
    |||||||||| ||| ||||||| | ||||||||||||||||| |||| ||  || |||| |||||||| |||||||    
T  20605290 ctctccttaccacagaatctacagctcttctctctacatgcccaaaccataaaattctagtttccaccatcttttc 20605215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 47372744 - 47372677
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccacc 219  Q
    |||| ||| ||||| |||| |||||||||| |||||||||||||||| ||  ||||||| ||||||||    
T  47372744 ctcttcttcctacaaaatccacgggtcttcgctctacatgcctaaaccatcgaagtctagtttccacc 47372677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 29398965 - 29398834
Alignment:
Q  94 tttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttctctctacatgcc 193  Q
    ||||||||||||||||||||||||||  ||||||| ||||||   |    |||||||||    || |||||| ||||||  |||||||||||||||||||    
T  29398965 tttttctaggtcttcctctgcctctagtgatttgactatcctctatccggtctactctc----ctcactacagaatctataggtcttctctctacatgcc 29398870  T
Q  194 taaacaatgtaagtctaatttccaccgtcttttcta 229  Q
     |||| |  ||||  || |||||||| |||||||||    
T  29398869 caaaccacataagcatattttccaccatcttttcta 29398834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 7682033 - 7682070
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  7682033 tttctcttatagtttttccaggtcttcctctgcctcta 7682070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 13805388 - 13805425
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  13805388 tttctcttatagtttttctaggttttcctctgcctcta 13805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 22420804 - 22420833
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  22420804 tatccaactcattaatctctagatctttct 22420833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 31339626 - 31339589
Alignment:
Q  155 tccttactacataatctacgggtcttctctctacatgc 192  Q
    |||||||||||||||||||  |||||||||||||||||    
T  31339626 tccttactacataatctacaagtcttctctctacatgc 31339589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31960019 - 31960080
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  31960019 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 31960080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 35555836 - 35555913
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||||| |||||| |||| || ||||||||||||| ||||| |||| |  |||||||| |||| ||| |||||||||    
T  35555836 ctctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttcta 35555913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 41192256 - 41192227
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  41192256 tatccaactcattaatctctagatctttct 41192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 41192921 - 41192852
Alignment:
Q  160 actacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||| ||||||| ||||||||||||||||||  |||  |  |||||||| |||||||| |||||||||    
T  41192921 actacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttcta 41192852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 43434001 - 43433940
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  43434001 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 43433940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 45569132 - 45569169
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  45569132 tttctcttataatgtttctaggtcttcctctgcctcta 45569169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 46715561 - 46715638
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||| |||||||||| ||  |||||||||||||||||| | || |  |||| ||| |||||||| |||||||||    
T  46715561 ctctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttcta 46715638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 47147568 - 47147539
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  47147568 tatccaactcattaatctctagatctttct 47147539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 50287039 - 50286978
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| ||  ||||||| |||| |||  ||||||||    
T  50287039 atctacgggtcttctctctacatgcccaaaccatccaagtctattttctaccaacttttcta 50286978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52569720 - 52569781
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  52569720 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 52569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 53540445 - 53540412
Alignment:
Q  86 tcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||| ||||||||||||||||||||||||||    
T  53540445 tcttatagtttttctaggtcttcctctgcctcta 53540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 53707871 - 53707810
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  53707871 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 53707810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 56375367 - 56375290
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccacccc 245  Q
    |||||||||||||||||||||||||| |||| || |||| ||  |||| |||  ||||||||| ||| |||| |||||    
T  56375367 atctacgggtcttctctctacatgcccaaaccatctaagcctgttttctaccaacttttctattataggtgctacccc 56375290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 25575018 - 25574990
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  25575018 atccaactcattaatctctagatctttct 25574990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 26024938 - 26024966
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  26024938 atccaactcattaatctctagatctttct 26024966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 26025007 - 26025035
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  26025007 atccaactcattaatctctagatctttct 26025035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 35690430 - 35690394
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  35690430 tttctcttatagtttttctaggtcttcctctacctct 35690394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 47611880 - 47611848
Alignment:
Q  88 ttatattttttctaggtcttcctctgcctctaa 120  Q
    ||||| |||||||||||||||||||||||||||    
T  47611880 ttataatttttctaggtcttcctctgcctctaa 47611848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 50680934 - 50680906
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  50680934 atccaactcattaatctctagatctttct 50680906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 38178383 - 38178479
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||   | | |||||    |||||||||||||| ||||||| |||||||    
T  38178383 tttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatcta----ctctccttactacaaaatctacaggtcttc 38178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 45512618 - 45512669
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatc 133  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||| ||||    
T  45512618 tttctcttatagtttttctaggtcttcctctgcctctagtgatttgactatc 45512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 35643729 - 35643766
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35643729 tttctcttatagtttttctaggtcttcctctgcctcta 35643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 4011242 - 4011198
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgattt 126  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||    
T  4011242 tttctcttatagtttttctaggtcttcctctgtctctagcgattt 4011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 9695804 - 9695629
Alignment:
Q  67 attaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaata-tccttggtatcatctactctctctccttactaca 165  Q
    ||||||||||||||||||||   ||| |||||| | || ||||||||||||||  ||||||| || |||||  | |||||||||||||    ||||| ||    
T  9695804 attaatctctagatctttct-aaatagtttttccaagttttcctctgcctctagtgatttgactactcctt-atctcatctactctct----ttacttca 9695711  T
Q  166 taatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaa 247  Q
     ||||||| || |||||||||||||||| |||| |  |||| | | |||||||| |||||||||  ||| |||| |||||||    
T  9695710 gaatctacaggacttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaa 9695629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 29520808 - 29520697
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| |||||||||| |||||||| |||||   ||||||| ||||||   | | ||||||||||    ||||||||| |||||||  ||||||    
T  29520808 tttctcttatagtttttctagg-cttcctctacctcttgtgatttgactatcctccatctgatctactctc----cttactacaaaatctacaagtcttc 29520714  T
Q  182 tctctacatgcctaaac 198  Q
    |||||||||||| ||||    
T  29520713 tctctacatgcccaaac 29520697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 41971879 - 41971952
Alignment:
Q  59 tccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatc 133  Q
    ||||||||||||||||||| |||||||| |  || ||||||||||| ||||| ||||||||  ||||||| ||||    
T  41971879 tccaactcattaatctctaaatctttct-tagtagtttttctaggttttcctttgcctctagtgatttgactatc 41971952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 1549478 - 1549507
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  1549478 tatccaactcattaatctctagatctttct 1549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 2216447 - 2216410
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  2216447 tttctcttatgttttttctaggtcttcctctacctcta 2216410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 10079994 - 10080023
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  10079994 tatccaactcattaatctctagatctttct 10080023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 12491343 - 12491404
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  12491343 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 12491404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 36545226 - 36545165
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  36545226 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 36545165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 38483056 - 38483085
Alignment:
Q  57 tatccaactcattaatctctagatctttct 86  Q
    ||||||||||||||||||||||||||||||    
T  38483056 tatccaactcattaatctctagatctttct 38483085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 79134 - 79090
Alignment:
Q  154 ctccttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    |||||||||||| ||||||| |||||||||| |||||||| ||||    
T  79134 ctccttactacaaaatctacaggtcttctctatacatgcccaaac 79090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 30783130 - 30783158
Alignment:
Q  58 atccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||    
T  30783130 atccaactcattaatctctagatctttct 30783158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 39388978 - 39388950
Alignment:
Q  57 tatccaactcattaatctctagatctttc 85  Q
    |||||||||||||||||||||||||||||    
T  39388978 tatccaactcattaatctctagatctttc 39388950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 39953453 - 39953529
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttct 228  Q
    ||||||||||||||||||| |  ||||  |||||||||||||||||| |  ||| |||| |||| ||| ||||||||    
T  39953453 ctctccttactacataatccataggtcacctctctacatgcctaaaccacctaaatctagtttctaccatcttttct 39953529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 41444463 - 41444502
Alignment:
Q  82 tttctcttata--ttttttctaggtcttcctctgcctcta 119  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  41444463 tttctcttatagtttttttctaggtcttcctctgcctcta 41444502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 45419394 - 45419358
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  45419394 tttctcttatagtttttctaggtcttcctctacctct 45419358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 36820152 - 36820251
Alignment:
Q  154 ctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacactct 253  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |  |||| ||| |||||||| ||||| |||  ||| |||| |||||||| ||||    
T  36820152 ctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgctaccccaactctct 36820251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 21200641 - 21200564
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||||||||| || |||||||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||||    
T  21200641 ctctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 21200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 31261065 - 31261111
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 128  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  31261065 tttctcttatagtttttctaggtcttcctctgcctctagtgatttga 31261111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 54365098 - 54365134
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    ||||||||||| |||||||||||||||||||||||||    
T  54365098 tttctcttatagtttttctaggtcttcctctgcctct 54365134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 39600804 - 39600916
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 181  Q
    ||||||||||| ||||||||||||||||||| |||||  | || ||| |||||| | | | |||||    |||||||  ||||| ||||||| |||||||    
T  39600804 tttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta----ctctcctcgctacagaatctacaggtcttc 39600899  T
Q  182 tctctacatgcctaaac 198  Q
    ||| |||||||| ||||    
T  39600900 tctttacatgccaaaac 39600916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 46140519 - 46140448
Alignment:
Q  158 ttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||| ||||||| ||||||||||||| ||| | |||| |  | |||||| ||||||||||||||||||    
T  46140519 ttactacagaatctacaggtcttctctctatatgtccaaaccacctgagtctagtttccaccgtcttttcta 46140448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 19758081 - 19758028
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctct 112  Q
    |||||||||||||||||||| || |||| || ||| |||||||||||||||||||    
T  19758081 atccaactcattaatctctaaatatttc-ctaatagtttttctaggtcttcctct 19758028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 29475880 - 29475810
Alignment:
Q  58 atccaactcattaatctctagatctttc---------tcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||    
T  29475880 atccaactcattaatctctagatctttcttaatagtttcttatagcttttctaggtcttcctctgcctcta 29475810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 30572988 - 30573026
Alignment:
Q  153 tctccttactacataatctacgggtcttctctctacatg 191  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  30572988 tctccttactacataatctataggtcttctctctacatg 30573026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 41452826 - 41452856
Alignment:
Q  56 ttatccaactcattaatctctagatctttct 86  Q
    |||||||||||||||||||||||||||||||    
T  41452826 ttatccaactcattaatctctagatctttct 41452856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 54128464 - 54128370
Alignment:
Q  159 tactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacactct 253  Q
    |||| ||| |||||| |||||| |||||||||||| |||| |  |||| ||| |||| ||| |||||||||  ||| |||| |||||||||||||    
T  54128464 tactgcatcatctacaggtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaacactct 54128370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 2968304 - 2968263
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcc 193  Q
    |||||||||||||| |||||| || |||||||||||||||||    
T  2968304 ctctccttactacaaaatctatggatcttctctctacatgcc 2968263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 19737178 - 19737126
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctc 111  Q
    |||||||||||||||||||| || |||| || ||| ||||||||||||||||||    
T  19737178 atccaactcattaatctctaaatatttc-ctaatagtttttctaggtcttcctc 19737126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 28245514 - 28245453
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||| ||||||||||||||| |||| || |||||||| |||| |||  ||||||||    
T  28245514 atctacgggttttctctctacatgcccaaaccatctaagtctattttctaccaacttttcta 28245453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 33755465 - 33755502
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  33755465 tttctcttatagtttttctaggttttcctctgcctcta 33755502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 36304160 - 36304100
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||||||||||||||||||||| | ||| |||| |||||||| |  |||||||||    
T  36304160 atccaactcattaatctctagatctttct-taatagttttactaggtctacaactgcctcta 36304100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 31453151 - 31453203
Alignment:
Q  176 gtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttct 228  Q
    |||||||||||||||||| ||||||  |||||||| |||| ||| ||||||||    
T  31453151 gtcttctctctacatgccaaaacaacctaagtctagtttctaccatcttttct 31453203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 44571621 - 44571562
Alignment:
Q  58 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctct 118  Q
    |||||||||||||||||||| || |||| |||||| ||||||||| ||||| ||| |||||    
T  44571621 atccaactcattaatctctaaatatttc-cttatagtttttctagatcttcttctacctct 44571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 50960760 - 50960796
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  50960760 tttctcttaaattttttctaggtcttcctctccctct 50960796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 2079433 - 2079356
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||| |  |||| ||| |||||||| |||||||||    
T  2079433 ctctccttactacataatctacaaatcttctctctacatacctaaaccacttaagcctattttccaccatcttttcta 2079356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 34628 - 34665
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  34628 tttctcttatagtttttctaggtcttcctctgcctcta 34665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 21870254 - 21870299
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaa 197  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||    
T  21870254 ctctccttactacaaaatctacaggtcttctctctaaatgcctaaa 21870299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 3963984 - 3963922
Alignment:
Q  57 tatccaactcattaatctctagatctttctc-ttatattttttctaggtcttcctctgcctct 118  Q
    |||| ||||||||||||| ||||| ||| || ||||| ||||||||||||||||||| |||||    
T  3963984 tatcaaactcattaatctatagatttttttccttatagtttttctaggtcttcctctacctct 3963922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 6293575 - 6293621
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaac 198  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| ||||    
T  6293575 ctctccttattacataatctacaggtgttctctctacatgcccaaac 6293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 1747764 - 1747801
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1747764 tttctcttatggtttttctaggtcttcctctgcctcta 1747801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 9593831 - 9593867
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctct 118  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  9593831 tttctcttataatttttctaggtcttcctctacctct 9593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 58349 - 58386
Alignment:
Q  82 tttctcttatattttttctaggtcttcctctgcctcta 119  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  58349 tttctcttatcgtttttctaggtcttcctctgcctcta 58386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 31545 - 31484
Alignment:
Q  168 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttcta 229  Q
    |||||||||||||||||||||||||| |||| || |||| ||| |||| |||  ||||||||    
T  31545 atctacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttcta 31484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 44057 - 44158
Alignment:
Q  152 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttctatgatatgtgccaccccaacact 251  Q
    |||||||||||| | |||||   ||||||||||||||||||| |||| |  |||| ||| ||||| || |||||||||  ||| |||| |||||||| ||    
T  44057 ctctccttactagagaatctgaaggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaactct 44156  T
Q  252 ct 253  Q
    ||    
T  44157 ct 44158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 66690 - 66658
Alignment:
Q  88 ttatattttttctaggtcttcctctgcctctaa 120  Q
    ||||| |||||||||||||||||||||||||||    
T  66690 ttataatttttctaggtcttcctctgcctctaa 66658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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